Variant report

Variant	nsv527650
Chromosome Location	chr5:96783726-97260358
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1515)
CpG islands
(count:488)
Chromatin interactive
region (count:26)
LncRNA
region (count:19)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1515 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:96869893-96870174	HepG2	liver:	n/a	n/a
2	ATF1	chr5:96925354-96925372	K562	blood:	n/a	n/a
3	ATF2	chr5:96883703-96884520	GM12878	blood:	n/a	n/a
4	ATF2	chr5:97224125-97224557	GM12878	blood:	n/a	n/a
5	ATF2	chr5:97173832-97174381	GM12878	blood:	n/a	n/a
6	ATF2	chr5:97173902-97174280	GM12878	blood:	n/a	n/a
7	ATF2	chr5:97224163-97224479	GM12878	blood:	n/a	n/a
8	ATF2	chr5:96883636-96884569	GM12878	blood:	n/a	n/a
9	BACH1	chr5:96885956-96886136	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr5:96861461-96861877	H1-hESC	embryonic stem cell:	n/a	n/a
11	BATF	chr5:96883695-96884539	GM12878	blood:	n/a	chr5:96884341-96884350
12	BATF	chr5:96884044-96884526	GM12878	blood:	n/a	chr5:96884341-96884350
13	BATF	chr5:97224132-97224459	GM12878	blood:	n/a	n/a
14	BATF	chr5:97173837-97174246	GM12878	blood:	n/a	chr5:97174165-97174175 chr5:97174107-97174117
15	BATF	chr5:96872429-96872695	GM12878	blood:	n/a	chr5:96872552-96872563
16	BATF	chr5:96883741-96884022	GM12878	blood:	n/a	n/a
17	BATF	chr5:97224123-97224497	GM12878	blood:	n/a	n/a
18	BATF	chr5:96872418-96872668	GM12878	blood:	n/a	chr5:96872552-96872563
19	BATF	chr5:97173882-97174325	GM12878	blood:	n/a	chr5:97174165-97174175 chr5:97174107-97174117
20	BCL11A	chr5:97259838-97260091	GM12878	blood:	n/a	n/a
21	BCL11A	chr5:97173923-97174242	GM12878	blood:	n/a	chr5:97174110-97174119 chr5:97174109-97174118 chr5:97174164-97174173
22	BCL11A	chr5:96883801-96884003	GM12878	blood:	n/a	chr5:96883828-96883837
23	BCL11A	chr5:97224140-97224399	GM12878	blood:	n/a	chr5:97224311-97224320
24	BCL11A	chr5:97224159-97224505	GM12878	blood:	n/a	chr5:97224311-97224320
25	BCL11A	chr5:97173980-97174260	GM12878	blood:	n/a	chr5:97174110-97174119 chr5:97174109-97174118 chr5:97174164-97174173
26	BCL11A	chr5:96884015-96884504	GM12878	blood:	n/a	n/a
27	BCL11A	chr5:96884033-96884506	GM12878	blood:	n/a	n/a
28	BCL3	chr5:96928285-96928637	GM12878	blood:	n/a	n/a
29	BCL3	chr5:96831847-96832152	GM12878	blood:	n/a	n/a
30	BCL3	chr5:97224086-97224486	GM12878	blood:	n/a	chr5:97224311-97224320
31	BHLHE40	chr5:97224143-97224411	GM12878	blood:	n/a	n/a
32	BHLHE40	chr5:96883684-96884500	GM12878	blood:	n/a	n/a
33	BHLHE40	chr5:96869825-96870150	GM12878	blood:	n/a	n/a
34	BHLHE40	chr5:97173921-97174267	GM12878	blood:	n/a	n/a
35	BHLHE40	chr5:96830650-96830767	GM12878	blood:	n/a	n/a
36	BRCA1	chr5:97175030-97175721	Hela-S3	cervix:	n/a	n/a
37	BRCA1	chr5:97205114-97205124	GM12878	blood:	n/a	n/a
38	BRCA1	chr5:97092073-97092104	GM12878	blood:	n/a	n/a
39	BRCA1	chr5:97173825-97174345	Hela-S3	cervix:	n/a	n/a
40	CBX3	chr5:97173869-97174377	HCT-116	colon:	n/a	n/a
41	CCNT2	chr5:97137638-97137838	K562	blood:	n/a	n/a
42	CEBPB	chr5:97173876-97174272	IMR90	lung:	n/a	n/a
43	CEBPB	chr5:97100346-97100779	IMR90	lung:	n/a	chr5:97100575-97100586 chr5:97100573-97100586 chr5:97100573-97100584
44	CEBPB	chr5:97100392-97100766	HepG2	liver:	n/a	chr5:97100575-97100586 chr5:97100573-97100586 chr5:97100573-97100584
45	CEBPB	chr5:97173852-97174388	HCT-116	colon:	n/a	n/a
46	CEBPB	chr5:96869838-96870259	MCF-7	breast:	n/a	chr5:96870105-96870116
47	CEBPB	chr5:97121118-97121214	HepG2	liver:	n/a	n/a
48	CEBPB	chr5:97179849-97180425	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr5:96869858-96870217	H1-hESC	embryonic stem cell:	n/a	chr5:96870105-96870116
50	CEBPB	chr5:96889595-96889861	Hela-S3	cervix:	n/a	chr5:96889732-96889743 chr5:96889717-96889728

(count:488 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:96789385-96789435	SK-N-MC	brain:	n/a
2	chr5:96845117-96845167	T-47D	breast:	n/a
3	chr5:96890257-96890307	HCT-116	colon:	n/a
4	chr5:96876834-96876884	HepG2	liver:	n/a
5	chr5:96789385-96789435	HUVEC	blood vessel:	n/a
6	chr5:96876834-96876884	U87	brain:	n/a
7	chr5:96890257-96890307	T-47D	breast:	n/a
8	chr5:96855476-96855526	GM06990	blood:	n/a
9	chr5:96890257-96890307	NB4	blood:	n/a
10	chr5:96789385-96789435	AG09309	skin:	n/a
11	chr5:96890257-96890307	AG09309	skin:	n/a
12	chr5:96789385-96789435	HepG2	liver:	n/a
13	chr5:96876834-96876884	HL-60	blood:	n/a
14	chr5:97191292-97191342	U87	brain:	n/a
15	chr5:96876834-96876884	Caco-2	colon:	n/a
16	chr5:96915770-96915820	HAEpiC	amniotic membrane:	n/a
17	chr5:96845117-96845167	HRPEpiC	eye:	n/a
18	chr5:96890257-96890307	NH-A	brain:	n/a
19	chr5:96890257-96890307	SAEC	small airway:	n/a
20	chr5:97191292-97191342	AG09319	gingival:	n/a
21	chr5:96876834-96876884	GM12878	blood:	n/a
22	chr5:96845117-96845167	Caco-2	colon:	n/a
23	chr5:96855476-96855526	HRPEpiC	eye:	n/a
24	chr5:96876834-96876884	K562	blood:	n/a
25	chr5:96881859-96881909	HUVEC	blood vessel:	n/a
26	chr5:96845117-96845167	Jurkat	blood:	n/a
27	chr5:96881859-96881909	NB4	blood:	n/a
28	chr5:96915770-96915820	HUVEC	blood vessel:	n/a
29	chr5:97191292-97191342	SK-N-MC	brain:	n/a
30	chr5:96789385-96789435	GM12891	blood:	n/a
31	chr5:97191292-97191342	RPTEC	kidney:	n/a
32	chr5:96915770-96915820	HIPEpiC	eye:	n/a
33	chr5:97191292-97191342	H1-hESC	embryonic stem cell:	embryo
34	chr5:96876834-96876884	Hepatocyte	liver:	n/a
35	chr5:96855476-96855526	HAEpiC	amniotic membrane:	n/a
36	chr5:96890257-96890307	HEK293	kidney:	embryo
37	chr5:97191292-97191342	HCPEpiC	choroid plexus:	n/a
38	chr5:96845117-96845167	NH-A	brain:	n/a
39	chr5:96789385-96789435	Caco-2	colon:	n/a
40	chr5:96876834-96876884	NH-A	brain:	n/a
41	chr5:96881859-96881909	Jurkat	blood:	n/a
42	chr5:96855476-96855526	NB4	blood:	n/a
43	chr5:96845117-96845167	Hepatocyte	liver:	n/a
44	chr5:96845117-96845167	LNCaP	prostate:	n/a
45	chr5:96881859-96881909	NT2-D1	testis:	n/a
46	chr5:96789385-96789435	LNCaP	prostate:	n/a
47	chr5:96789385-96789435	ECC-1	luminal epithelium:	n/a
48	chr5:96789385-96789435	HRE	kidney:	n/a
49	chr5:96789385-96789435	GM19239	blood:	n/a
50	chr5:96881859-96881909	HRE	kidney:	n/a

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:97063042..97065906-chr5:97067363..97069421,2	MCF-7	breast:
2	chr5:97162501..97165001-chr5:97167662..97169407,2	MCF-7	breast:
3	chr5:97203818..97206757-chr5:97208812..97211809,2	K562	blood:
4	chr5:96865281..96867677-chr5:96867921..96869530,2	K562	blood:
5	chr5:96632479..96633406-chr5:96869339..96870359,6	MCF-7	breast:
6	chr5:96898495..96900851-chr5:96905056..96906917,2	K562	blood:
7	chr5:97207148..97208975-chr5:97213192..97214894,2	K562	blood:
8	chr5:97162501..97165001-chr5:97167662..97169407,2	MCF-7	breast:
9	chr5:96987103..96987619-chr5:97253568..97254119,2	MCF-7	breast:
10	chr5:97113626..97116438-chr5:97121561..97123647,2	K562	blood:
11	chr5:96632616..96633407-chr5:96869853..96870506,3	MCF-7	breast:
12	chr5:96566460..96567205-chr5:96869494..96870442,2	MCF-7	breast:
13	chr5:96902855..96905560-chr5:96907320..96909656,2	K562	blood:
14	chr5:97160876..97163358-chr5:97164775..97167035,2	K562	blood:
15	chr5:97063042..97065906-chr5:97067363..97069421,2	MCF-7	breast:
16	chr5:97203818..97206757-chr5:97208812..97211809,2	K562	blood:
17	chr5:97160876..97163358-chr5:97164775..97167035,2	K562	blood:
18	chr5:97027188..97030158-chr5:97031253..97033564,2	K562	blood:
19	chr5:97113626..97116438-chr5:97121561..97123647,2	K562	blood:
20	chr5:96987103..96987619-chr5:97253568..97254119,2	MCF-7	breast:
21	chr5:97027188..97030158-chr5:97031253..97033564,2	K562	blood:
22	chr5:97207148..97208975-chr5:97213192..97214894,2	K562	blood:
23	chr5:96869180..96869850-chr5:98103055..98104021,2	MCF-7	breast:
24	chr5:96902855..96905560-chr5:96907320..96909656,2	K562	blood:
25	chr5:96865281..96867677-chr5:96867921..96869530,2	K562	blood:
26	chr5:96898495..96900851-chr5:96905056..96906917,2	K562	blood:

(count:19 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RIOK2-4	chr5:96786031-96786319	NONHSAT102930
2	lnc-CTD-2215E18.1.1-2	chr5:96840400-96840496	XLOC_004483
3	lnc-CTD-2215E18.1.1-2	chr5:96856933-96856994	XLOC_004483
4	lnc-CTD-2215E18.1.1-2	chr5:97004255-97004366	XLOC_004483
5	lnc-CTD-2215E18.1.1-2	chr5:96856933-96856994	NR_105028
6	lnc-CTD-2215E18.1.1-2	chr5:96840399-96840496	NONHSAT102931
7	lnc-CTD-2215E18.1.1-2	chr5:97004255-97004366	NR_105028
8	lnc-CTD-2215E18.1.1-2	chr5:97006297-97006750	NONHSAT102931
9	lnc-RIOK2-3	chr5:96785062-96785445	NONHSAT102929
10	lnc-CTD-2215E18.1.1-2	chr5:96856932-96856994	NONHSAT102931
11	lnc-CTD-2215E18.1.1-2	chr5:96840400-96840496	NR_105028
12	lnc-CTD-2215E18.1.1-2	chr5:97004254-97004366	NONHSAT102931
13	lnc-CTD-2215E18.1.1-2	chr5:97006298-97006750	XLOC_004483
14	lnc-CTD-2215E18.1.1-3	chr5:97235342-97235457	XLOC_004484
15	lnc-CTD-2215E18.1.1-2	chr5:97006298-97006755	NR_105028
16	lnc-CTD-2215E18.1.1-3	chr5:97257835-97258399	XLOC_004484
17	lnc-CTD-2215E18.1.1-3	chr5:97217132-97217271	XLOC_004484
18	lnc-CTD-2215E18.1.1-3	chr5:97217124-97217271	XLOC_004484
19	lnc-CTD-2215E18.1.1-6	chr5:97073598-97074617	NONHSAT102935

No data

Variant related genes	Relation type
ENSG00000248931	TF binding region
ENSG00000248202	TF binding region
ENSG00000250331	TF binding region
ENSG00000251193	TF binding region
ENSG00000249977	TF binding region
ENSG00000248931	CpG island
ENSG00000248202	CpG island
ENSG00000250331	CpG island
ENSG00000251193	CpG island
ENSG00000249977	CpG island
DNAJB12	miRNA target sites

Extended variants
information (count: 9359 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:9359 , 50 per page) page: 1 2 3 4 5 6 7 ... 188

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115521190	chr5:96785145-96785146	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs527609916	chr5:96785146-96785147	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs541208855	chr5:96785159-96785160	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs144754980	chr5:96785195-96785196	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs540881152	chr5:96785205-96785206	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs971865	chr5:96785206-96785207	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs532931416	chr5:96785262-96785263	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs115077789	chr5:96785330-96785331	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs563779449	chr5:96785353-96785354	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs182498412	chr5:96785368-96785369	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs532886006	chr5:96785371-96785372	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs138896742	chr5:96785378-96785379	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs7722625	chr5:96785419-96785420	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs561870171	chr5:96785442-96785443	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs202169745	chr5:96786035-96786036	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs561376882	chr5:96786042-96786043	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs534254767	chr5:96786057-96786058	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs528460720	chr5:96786070-96786071	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs2351734	chr5:96786079-96786080	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs374149179	chr5:96786116-96786117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs571947069	chr5:96786117-96786118	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs61346157	chr5:96786121-96786122	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs55928599	chr5:96786178-96786179	Inactive region	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs551152825	chr5:96786225-96786226	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs183811510	chr5:96786288-96786289	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs536863737	chr5:96786295-96786296	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs570977155	chr5:96786329-96786330	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs555137688	chr5:96786344-96786345	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs74505843	chr5:96786529-96786530	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs144375609	chr5:96786546-96786547	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs74380714	chr5:96786613-96786614	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs150368379	chr5:96786628-96786629	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs374648088	chr5:96786629-96786630	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs112656850	chr5:96786636-96786637	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs80099667	chr5:96786652-96786653	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs375959212	chr5:96787812-96787813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs74632819	chr5:96787863-96787864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs34133136	chr5:96787899-96787900	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs147033611	chr5:96787922-96787923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs554906195	chr5:96787936-96787937	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs145118481	chr5:96787967-96787968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs141097684	chr5:96788057-96788058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs559069089	chr5:96788069-96788070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs78547908	chr5:96788072-96788073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs144820637	chr5:96788074-96788075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs180919157	chr5:96788087-96788088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs562944563	chr5:96788121-96788122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs575026725	chr5:96788135-96788136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs9314208	chr5:96788162-96788163	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs77867340	chr5:96788211-96788212	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Mental retardation	19471318	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	19036926	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Bipolar disorder	19214233	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21611746	CNVD

Chromatin state (count:941 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96785000-96785400	Enhancers	GM12878-XiMat	blood
2	chr5:96787800-96788400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr5:96787800-96789400	Enhancers	Brain Angular Gyrus	brain
4	chr5:96787800-96789800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:96787800-96790000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:96787800-96790000	Enhancers	Brain Hippocampus Middle	brain
7	chr5:96787800-96790200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:96788000-96789800	Enhancers	Brain Substantia Nigra	brain
9	chr5:96788000-96790000	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:96788000-96790600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:96788200-96788800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:96788400-96788800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr5:96788400-96789000	Enhancers	Colon Smooth Muscle	Colon
14	chr5:96788400-96789400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:96788400-96790000	Enhancers	Brain Germinal Matrix	brain
16	chr5:96788600-96788800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:96788600-96789200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:96788600-96789200	Enhancers	Brain Anterior Caudate	brain
19	chr5:96788600-96789400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:96788800-96789600	Enhancers	Fetal Brain Female	brain
21	chr5:96788800-96789800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:96789000-96789400	Enhancers	Fetal Kidney	kidney
23	chr5:96791800-96794600	Weak transcription	Pancreas	Pancrea
24	chr5:96794200-96794400	Enhancers	GM12878-XiMat	blood
25	chr5:96794400-96794800	Flanking Active TSS	GM12878-XiMat	blood
26	chr5:96794600-96794800	ZNF genes & repeats	Pancreas	Pancrea
27	chr5:96794800-96795400	Enhancers	GM12878-XiMat	blood
28	chr5:96797400-96798400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:96801600-96802600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:96802600-96803200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:96806000-96808000	ZNF genes & repeats	Pancreas	Pancrea
32	chr5:96807000-96808000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:96808000-96808200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:96811800-96812400	Enhancers	GM12878-XiMat	blood
35	chr5:96812200-96813000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:96812400-96812800	Enhancers	NHEK	skin
37	chr5:96812400-96813000	Flanking Active TSS	GM12878-XiMat	blood
38	chr5:96813000-96815600	Enhancers	GM12878-XiMat	blood
39	chr5:96814000-96814600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:96814200-96814600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:96814200-96814600	Enhancers	Fetal Lung	lung
42	chr5:96814200-96814600	Enhancers	Ovary	ovary
43	chr5:96814400-96815000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:96814600-96816200	Weak transcription	Ovary	ovary
45	chr5:96815600-96816600	Flanking Active TSS	GM12878-XiMat	blood
46	chr5:96816200-96816600	Enhancers	Ovary	ovary
47	chr5:96816600-96816800	Enhancers	GM12878-XiMat	blood
48	chr5:96816600-96818600	Weak transcription	Ovary	ovary
49	chr5:96817400-96817600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:96818400-96818600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links