Variant report

Variant	nsv527910
Chromosome Location	chr11:9765348-9769063
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9748206..9750640-chr11:9768141..9770073,2	MCF-7	breast:
2	chr11:9759666..9763532-chr11:9766394..9768623,4	K562	blood:
3	chr11:9759666..9763371-chr11:9766657..9768623,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WEE1-3	chr11:9766574-9768012	NONHSAT017934

Variant related genes	Relation type
ENSG00000133789	chromatin interactions

Extended variants
information (count: 151 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:151 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7939896	chr11:9765348-9765349	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs534128559	chr11:9765349-9765350	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs557007433	chr11:9765356-9765357	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs543900980	chr11:9765375-9765376	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs185934827	chr11:9765432-9765433	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs4910498	chr11:9765503-9765504	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs71034739	chr11:9765511-9765512	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs578016192	chr11:9765512-9765513	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs532296456	chr11:9765571-9765572	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs573428501	chr11:9765600-9765601	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs191177684	chr11:9765624-9765625	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs75963977	chr11:9765640-9765641	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs367700174	chr11:9765666-9765667	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs4910061	chr11:9765667-9765668	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs35770878	chr11:9765684-9765685	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs182616884	chr11:9765685-9765686	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs564107175	chr11:9765703-9765704	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs371916073	chr11:9765719-9765720	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs547205339	chr11:9765720-9765721	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs533052227	chr11:9765758-9765759	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs372295744	chr11:9765761-9765762	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs141497847	chr11:9765778-9765779	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs558525115	chr11:9765813-9765814	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs560045034	chr11:9765824-9765825	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs529097279	chr11:9765835-9765836	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs548972109	chr11:9765837-9765838	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs199577633	chr11:9765905-9765906	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs568833536	chr11:9765913-9765914	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187279884	chr11:9765939-9765940	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs550544917	chr11:9765947-9765948	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs191848611	chr11:9766041-9766042	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs539546986	chr11:9766075-9766076	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs553433426	chr11:9766125-9766126	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs566908943	chr11:9766126-9766127	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs367874276	chr11:9766128-9766129	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs182905379	chr11:9766151-9766152	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs568033928	chr11:9766167-9766168	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs188675950	chr11:9766238-9766239	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs575995587	chr11:9766246-9766247	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs536665045	chr11:9766315-9766316	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs193095106	chr11:9766316-9766317	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs57590863	chr11:9766348-9766349	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs61284089	chr11:9766359-9766360	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs185848855	chr11:9766411-9766412	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs576915597	chr11:9766432-9766433	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs75722201	chr11:9766433-9766434	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs189112989	chr11:9766459-9766460	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs370812234	chr11:9766465-9766466	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs538808105	chr11:9766524-9766525	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs60929104	chr11:9766544-9766545	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:214 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9742200-9779400	Weak transcription	Fetal Brain Male	brain
2	chr11:9745000-9775600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:9755000-9777600	Weak transcription	Colonic Mucosa	Colon
4	chr11:9755400-9769800	Weak transcription	Pancreas	Pancrea
5	chr11:9757400-9766400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:9757400-9769200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:9757600-9774600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:9758400-9769800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:9758400-9769800	Weak transcription	Stomach Mucosa	stomach
10	chr11:9758800-9769800	Weak transcription	Brain Anterior Caudate	brain
11	chr11:9758800-9776000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:9759200-9769400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:9760600-9769800	Weak transcription	Fetal Heart	heart
14	chr11:9761000-9769400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:9761000-9777200	Weak transcription	Fetal Kidney	kidney
16	chr11:9761800-9766000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:9761800-9772200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:9762200-9769400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:9762200-9769400	Weak transcription	Ovary	ovary
20	chr11:9762200-9771600	Weak transcription	Aorta	Aorta
21	chr11:9762400-9767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:9762400-9769200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:9762400-9769800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:9762400-9772000	Weak transcription	Gastric	stomach
25	chr11:9762400-9777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:9762400-9777400	Weak transcription	Esophagus	oesophagus
27	chr11:9762400-9777400	Weak transcription	Right Ventricle	heart
28	chr11:9762400-9779400	Weak transcription	Liver	Liver
29	chr11:9762400-9779400	Weak transcription	Psoas Muscle	Psoas
30	chr11:9762600-9767200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:9762600-9769000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:9762600-9769200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:9762600-9769800	Weak transcription	Brain Angular Gyrus	brain
34	chr11:9762600-9769800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:9762600-9769800	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:9762600-9779200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:9762800-9769800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:9762800-9779400	Weak transcription	Fetal Brain Female	brain
39	chr11:9763000-9769800	Weak transcription	Brain Substantia Nigra	brain
40	chr11:9763000-9770000	Weak transcription	Small Intestine	intestine
41	chr11:9763200-9766600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:9763200-9767400	Weak transcription	Fetal Thymus	thymus
43	chr11:9763200-9768800	Weak transcription	Hela-S3	cervix
44	chr11:9763200-9769400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:9763200-9773600	Weak transcription	HepG2	liver
46	chr11:9763200-9775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:9763400-9765800	Weak transcription	HSMM	muscle
48	chr11:9763400-9766600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:9763400-9769200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:9763400-9769400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links