Variant report

Variant	nsv528428
Chromosome Location	chr13:90756983-90761259
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:90760884..90762558-chr13:90777386..90780002,2	K562	blood:
2	chr13:90760228..90761976-chr13:90768337..90770152,2	K562	blood:
3	chr13:90757480..90759080-chr13:90956542..90958923,2	K562	blood:
4	chr13:90759395..90761976-chr13:90768337..90771167,3	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-10	chr13:90760108-90760794	NONHSAT034643
2	lnc-DCT-10	chr13:90758201-90758456	NONHSAT034642
3	lnc-DCT-10	chr13:90758837-90760915	NONHSAT034642
4	lnc-DCT-10	chr13:90758201-90758456	ENSG00000261446.1
5	lnc-DCT-10	chr13:90758189-90758456	NONHSAT034643
6	lnc-DCT-10	chr13:90758837-90760915	ENSG00000261446.1

No data

Extended variants
information (count: 171 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:171 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2637451	chr13:90756983-90756984	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs188263026	chr13:90756997-90756998	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs72641506	chr13:90757010-90757011	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs566826635	chr13:90757047-90757048	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs2637450	chr13:90757057-90757058	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs7338149	chr13:90757098-90757099	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs549507551	chr13:90757127-90757128	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570855738	chr13:90757162-90757163	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538085449	chr13:90757209-90757210	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs556353471	chr13:90757281-90757282	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs574806361	chr13:90757398-90757399	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2805635	chr13:90757411-90757412	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs554092860	chr13:90757460-90757461	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs74101406	chr13:90757473-90757474	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs545477956	chr13:90757498-90757499	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs564244867	chr13:90757503-90757504	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs576011499	chr13:90757544-90757545	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs374770575	chr13:90757612-90757613	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs544402805	chr13:90757619-90757620	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs562717368	chr13:90757658-90757659	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs530345406	chr13:90757663-90757664	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs180673403	chr13:90757675-90757676	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560603255	chr13:90757716-90757717	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186475157	chr13:90757803-90757804	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs5805611	chr13:90757849-90757850	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs397755904	chr13:90757862-90757863	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376137158	chr13:90757980-90757981	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566803725	chr13:90758025-90758026	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552279735	chr13:90758051-90758052	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191856854	chr13:90758054-90758055	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs369615115	chr13:90758092-90758093	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs550016323	chr13:90758105-90758106	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78725394	chr13:90758124-90758125	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs183764922	chr13:90758151-90758152	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs535621714	chr13:90758159-90758160	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554080485	chr13:90758262-90758263	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs148749069	chr13:90758289-90758290	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs539426283	chr13:90758309-90758310	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs557419235	chr13:90758322-90758323	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs554212929	chr13:90758349-90758350	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs576106841	chr13:90758352-90758353	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs551639519	chr13:90758363-90758364	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs186674431	chr13:90758370-90758371	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs570140321	chr13:90758395-90758396	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs539042063	chr13:90758458-90758459	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191564612	chr13:90758478-90758479	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs555883028	chr13:90758495-90758496	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs2805636	chr13:90758514-90758515	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs57247646	chr13:90758534-90758535	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202103618	chr13:90758535-90758536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Burkitt''s lymphoma	20823134	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90755400-90758000	Weak transcription	Right Atrium	heart
2	chr13:90756600-90757400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:90756800-90757400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:90756800-90757400	Enhancers	Esophagus	oesophagus
5	chr13:90756800-90759000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:90757000-90758400	Enhancers	HMEC	breast
7	chr13:90757000-90758800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:90757000-90759000	Enhancers	NHEK	skin
9	chr13:90757200-90757600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:90757200-90758800	Enhancers	NHDF-Ad	bronchial
11	chr13:90757200-90759000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:90757200-90759000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:90757400-90757600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:90757400-90757800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr13:90757400-90758000	Enhancers	NH-A	brain
16	chr13:90757400-90758400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:90757400-90759200	Weak transcription	Esophagus	oesophagus
18	chr13:90757600-90758200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:90757600-90758400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr13:90758000-90758400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:90758000-90758400	Flanking Active TSS	NH-A	brain
22	chr13:90758000-90758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr13:90758000-90758600	Enhancers	HSMM	muscle
24	chr13:90758000-90759000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr13:90758200-90758400	Enhancers	Fetal Lung	lung
26	chr13:90758200-90758600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr13:90758200-90758800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr13:90758400-90758600	Enhancers	Fetal Muscle Leg	muscle
29	chr13:90758400-90758800	Enhancers	NH-A	brain
30	chr13:90758400-90759000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr13:90758400-90759800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr13:90758600-90760200	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:90759200-90759400	Enhancers	Esophagus	oesophagus
34	chr13:90759400-90759600	Enhancers	Colonic Mucosa	Colon
35	chr13:90759400-90759800	Weak transcription	Esophagus	oesophagus
36	chr13:90759800-90760200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:90759800-90760200	Enhancers	Esophagus	oesophagus
38	chr13:90760200-90760400	Enhancers	Fetal Muscle Leg	muscle
39	chr13:90760200-90761200	Enhancers	Colonic Mucosa	Colon
40	chr13:90760400-90761200	Weak transcription	Fetal Muscle Leg	muscle
41	chr13:90760600-90761600	Enhancers	Fetal Lung	lung
42	chr13:90761200-90761600	Enhancers	Fetal Muscle Leg	muscle

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