Variant report

Variant	nsv528753
Chromosome Location	chr7:112373996-112378203
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM168-1	chr7:112375221-112376330	NONHSAT122799
2	lnc-TMEM168-1	chr7:112377832-112378748	NONHSAT122799

Extended variants
information (count: 169 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:169 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1614000	chr7:112373996-112373997	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs370461376	chr7:112374018-112374019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539047473	chr7:112374020-112374021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs574735060	chr7:112374045-112374046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542174226	chr7:112374051-112374052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150481491	chr7:112374086-112374087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189961023	chr7:112374113-112374114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546456077	chr7:112374130-112374131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs376879781	chr7:112374181-112374182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75557558	chr7:112374182-112374183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545507528	chr7:112374194-112374195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112926023	chr7:112374207-112374208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372727032	chr7:112374212-112374213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs532294541	chr7:112374237-112374238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs544280476	chr7:112374249-112374250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562350908	chr7:112374254-112374255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529655525	chr7:112374282-112374283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs138342480	chr7:112374332-112374333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548207799	chr7:112374362-112374363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182290237	chr7:112374365-112374366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562453361	chr7:112374370-112374371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs149610208	chr7:112374390-112374391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370770726	chr7:112374399-112374400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186514333	chr7:112374405-112374406	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs530823941	chr7:112374474-112374475	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs570309675	chr7:112374490-112374491	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs537952947	chr7:112374493-112374494	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs374143707	chr7:112374512-112374513	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs556586810	chr7:112374563-112374564	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs568384910	chr7:112374605-112374606	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs571756912	chr7:112374651-112374652	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs567657538	chr7:112374652-112374653	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs200167195	chr7:112374661-112374662	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs535871524	chr7:112374663-112374664	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs75815690	chr7:112374760-112374761	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs572819518	chr7:112374772-112374773	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs80033911	chr7:112374789-112374790	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs147289606	chr7:112374790-112374791	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs576666084	chr7:112374796-112374797	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs1718943	chr7:112374860-112374861	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs562578196	chr7:112374916-112374917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs529733399	chr7:112374924-112374925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541845459	chr7:112374937-112374938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559884787	chr7:112374970-112374971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs527626618	chr7:112374976-112374977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs79834736	chr7:112374997-112374998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570327728	chr7:112375024-112375025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs143061184	chr7:112375074-112375075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs552544701	chr7:112375093-112375094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568574175	chr7:112375122-112375123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute lymphoblastic leukemia	21248843	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112374400-112374800	Active TSS	Fetal Heart	heart
3	chr7:112374800-112384600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links