Variant report

Variant	nsv528860
Chromosome Location	chr10:91704812-91709123
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PANK1-7	chr10:91705952-91706174	NONHSAT015579
2	lnc-PANK1-7	chr10:91706886-91707110	NONHSAT015579
3	lnc-PANK1-7	chr10:91705612-91705740	NONHSAT015579

Extended variants
information (count: 77 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1924706	chr10:91704812-91704813	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs566157783	chr10:91704813-91704814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs183054024	chr10:91704819-91704820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs1924707	chr10:91704850-91704851	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs548437037	chr10:91704931-91704932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs143789851	chr10:91704946-91704947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568170654	chr10:91704967-91704968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs117355878	chr10:91704987-91704988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556229053	chr10:91705002-91705003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372161143	chr10:91705074-91705075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs146357022	chr10:91705158-91705159	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs58848913	chr10:91705165-91705166	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs144338541	chr10:91705189-91705190	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs56703504	chr10:91705190-91705191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs541172223	chr10:91705199-91705200	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs201636048	chr10:91705241-91705242	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs397771991	chr10:91705255-91705256	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs560919366	chr10:91705307-91705308	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs77961189	chr10:91705321-91705322	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs187620381	chr10:91705378-91705379	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs149426970	chr10:91705404-91705405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs563366682	chr10:91705544-91705545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs532339653	chr10:91705561-91705562	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552400159	chr10:91705575-91705576	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs559752925	chr10:91705588-91705589	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs113247670	chr10:91705649-91705650	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs76137222	chr10:91705684-91705685	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs548803755	chr10:91705706-91705707	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs144801820	chr10:91705779-91705780	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs372145235	chr10:91705786-91705787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs551267273	chr10:91705832-91705833	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs80059117	chr10:91705836-91705837	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs569682564	chr10:91705847-91705848	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs538596075	chr10:91705910-91705911	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs148552738	chr10:91705932-91705933	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs184333699	chr10:91705952-91705953	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
37	rs187999237	chr10:91705955-91705956	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
38	rs17129349	chr10:91705970-91705971	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs554780017	chr10:91705999-91706000	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
40	rs35054991	chr10:91706053-91706054	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
41	rs574267388	chr10:91706087-91706088	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
42	rs142473606	chr10:91706116-91706117	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
43	rs376582021	chr10:91706125-91706126	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
44	rs77269520	chr10:91706132-91706133	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
45	rs373637542	chr10:91706247-91706248	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs539078467	chr10:91706268-91706269	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs192470435	chr10:91706293-91706294	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs535786638	chr10:91706886-91706887	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs372717682	chr10:91706910-91706911	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs184721790	chr10:91706919-91706920	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91700200-91705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:91704600-91705000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:91705000-91706000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:91705200-91706000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:91705200-91706200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:91705400-91706000	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:91705400-91706000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:91705400-91706400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:91705600-91706000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:91705800-91706200	Enhancers	Primary T cells from cord blood	blood
11	chr10:91705800-91706200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr10:91705800-91706200	Flanking Active TSS	Dnd41	blood
13	chr10:91705800-91706200	Active TSS	NHDF-Ad	bronchial
14	chr10:91705800-91706200	Active TSS	NHLF	lung
15	chr10:91705800-91706400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:91706200-91706400	Enhancers	Dnd41	blood
17	chr10:91708600-91710200	Enhancers	Fetal Brain Male	brain

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