Variant report

Variant	nsv528906
Chromosome Location	chr6:2145447-2156262
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf195-21	chr6:2152486-2152826	NONHSAT106605
2	lnc-C6orf195-21	chr6:2150891-2151124	NONHSAT106605

Extended variants
information (count: 382 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:382 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4959168	chr6:2145447-2145448	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs148486125	chr6:2145459-2145460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531734495	chr6:2145471-2145472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143390546	chr6:2145490-2145491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190344652	chr6:2145491-2145492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs574601505	chr6:2145511-2145512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs35434880	chr6:2145607-2145608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs182969882	chr6:2145633-2145634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs371085698	chr6:2145648-2145649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs59344882	chr6:2145665-2145666	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs528426499	chr6:2145751-2145752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138661446	chr6:2145773-2145774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs36139025	chr6:2145776-2145777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs529746262	chr6:2145800-2145801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs199767789	chr6:2145801-2145802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs77646409	chr6:2145838-2145839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs565007832	chr6:2145839-2145840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs536888949	chr6:2145849-2145850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs115644477	chr6:2145863-2145864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs76160305	chr6:2145881-2145882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs187394594	chr6:2145904-2145905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35556563	chr6:2145941-2145942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs70992123	chr6:2145944-2145945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79934538	chr6:2145989-2145990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs542734564	chr6:2145995-2145996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs530359886	chr6:2146038-2146039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140391579	chr6:2146043-2146044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12529116	chr6:2146051-2146052	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs144354660	chr6:2146077-2146078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558601631	chr6:2146078-2146079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs34232049	chr6:2146093-2146094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs183863902	chr6:2146115-2146116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372782204	chr6:2146119-2146120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115959420	chr6:2146120-2146121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs554693758	chr6:2146142-2146143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9501811	chr6:2146151-2146152	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs540429760	chr6:2146155-2146156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs116384509	chr6:2146171-2146172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544349825	chr6:2146175-2146176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147798677	chr6:2146191-2146192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs188808911	chr6:2146192-2146193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564917910	chr6:2146262-2146263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530861663	chr6:2146287-2146288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs544371860	chr6:2146288-2146289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs192686160	chr6:2146355-2146356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs184535133	chr6:2146377-2146378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs188484118	chr6:2146384-2146385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs191544800	chr6:2146418-2146419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs568520863	chr6:2146474-2146475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs139336376	chr6:2146512-2146513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2128000-2160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:2134400-2157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:2137600-2146600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:2142200-2147600	Weak transcription	Osteobl	bone
5	chr6:2142200-2151600	Weak transcription	HMEC	breast
6	chr6:2142600-2161000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:2143600-2161600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:2143600-2161600	Weak transcription	HepG2	liver
9	chr6:2144000-2147400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:2144800-2149000	Weak transcription	Gastric	stomach
11	chr6:2144800-2157400	Weak transcription	Hela-S3	cervix
12	chr6:2145200-2146800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:2145200-2157600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:2146600-2146800	Enhancers	Fetal Intestine Small	intestine
15	chr6:2146600-2146800	Enhancers	Small Intestine	intestine
16	chr6:2147200-2147400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:2147400-2147800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:2147400-2147800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:2147400-2148800	Enhancers	NHDF-Ad	bronchial
20	chr6:2147400-2149000	Weak transcription	Primary T cells from cord blood	blood
21	chr6:2147400-2149000	Enhancers	NHLF	lung
22	chr6:2147600-2147800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:2147600-2147800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:2147600-2147800	Enhancers	Osteobl	bone
25	chr6:2147600-2148000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:2147600-2148800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:2147800-2148000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:2147800-2148400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:2147800-2148600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:2147800-2148600	Flanking Active TSS	Osteobl	bone
31	chr6:2147800-2148800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:2147800-2149000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:2147800-2149800	Enhancers	Aorta	Aorta
34	chr6:2148000-2148400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:2148000-2148600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:2148400-2148800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:2148400-2148800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:2148600-2148800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:2148600-2149000	Enhancers	Osteobl	bone
40	chr6:2148600-2149200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:2148800-2149200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:2148800-2149200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:2148800-2157200	Weak transcription	NHDF-Ad	bronchial
44	chr6:2149000-2149200	Enhancers	Gastric	stomach
45	chr6:2149000-2149200	Enhancers	Pancreas	Pancrea
46	chr6:2149000-2149200	Flanking Active TSS	Osteobl	bone
47	chr6:2149000-2149400	Strong transcription	Primary T cells from cord blood	blood
48	chr6:2149200-2149400	Enhancers	Osteobl	bone
49	chr6:2149200-2149600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:2149200-2159000	Weak transcription	Gastric	stomach

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