Variant report

Variant	nsv52989
Chromosome Location	chr12:40879673-40880149
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40879237-40885130	NONHSAT027728

Extended variants
information (count: 44 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571166594	chr12:40879682-40879683	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs369642334	chr12:40879690-40879691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs370595315	chr12:40879700-40879701	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs556864035	chr12:40879704-40879705	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs142791784	chr12:40879714-40879715	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs542451097	chr12:40879729-40879730	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs554640005	chr12:40879734-40879735	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs573242163	chr12:40879756-40879757	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs540379035	chr12:40879757-40879758	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs565248492	chr12:40879759-40879760	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs532424524	chr12:40879768-40879769	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs544868588	chr12:40879779-40879780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs116603446	chr12:40879817-40879818	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs200092808	chr12:40879836-40879837	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs74076599	chr12:40879840-40879841	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs150636441	chr12:40879843-40879844	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs12818027	chr12:40879854-40879855	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs528149333	chr12:40879876-40879877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs546395342	chr12:40879879-40879880	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs571199254	chr12:40879917-40879918	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs538288261	chr12:40879934-40879935	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs77714081	chr12:40879936-40879937	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs78154920	chr12:40879937-40879938	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs556825502	chr12:40879977-40879978	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs568856416	chr12:40879978-40879979	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs371826948	chr12:40879981-40879982	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs554302557	chr12:40879992-40879993	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs572967073	chr12:40880022-40880023	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs78985227	chr12:40880023-40880024	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs75846307	chr12:40880045-40880046	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs181342596	chr12:40880056-40880057	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs2638868	chr12:40880060-40880061	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs79838518	chr12:40880076-40880077	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs2638869	chr12:40880081-40880082	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs77590081	chr12:40880093-40880094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs116421685	chr12:40880098-40880099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs74726051	chr12:40880116-40880117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs563175126	chr12:40880119-40880120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs79314009	chr12:40880128-40880129	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs377247637	chr12:40880133-40880134	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs75833061	chr12:40880137-40880138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs575141749	chr12:40880143-40880144	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs12820027	chr12:40880146-40880147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs12825859	chr12:40880149-40880150	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Autism	20858243	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Cancer	20164920	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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