Variant report

Variant	nsv529953
Chromosome Location	chrX:155058022-155209034
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chrX:155110700-155111118	GM12878	blood:	n/a	n/a
2	ATF2	chrX:155106295-155106691	GM12878	blood:	n/a	n/a
3	ATF3	chrX:155117896-155118116	K562	blood:	n/a	n/a
4	ATF3	chrX:155110793-155111031	K562	blood:	n/a	n/a
5	ATF3	chrX:155117821-155118206	K562	blood:	n/a	n/a
6	BCLAF1	chrX:155110613-155111149	GM12878	blood:	n/a	chrX:155111130-155111143
7	BCLAF1	chrX:155110620-155111034	GM12878	blood:	n/a	n/a
8	CBX3	chrX:155097539-155097798	K562	blood:	n/a	n/a
9	CBX3	chrX:155117763-155118332	HCT-116	colon:	n/a	n/a
10	CBX3	chrX:155117729-155118210	HCT-116	colon:	n/a	n/a
11	CBX3	chrX:155193867-155194177	K562	blood:	n/a	n/a
12	CBX3	chrX:155197896-155198446	K562	blood:	n/a	n/a
13	CBX3	chrX:155110478-155111375	K562	blood:	n/a	n/a
14	CBX3	chrX:155097474-155097882	K562	blood:	n/a	n/a
15	CBX3	chrX:155157333-155157707	K562	blood:	n/a	n/a
16	CBX3	chrX:155193995-155194178	K562	blood:	n/a	n/a
17	CEBPD	chrX:155110955-155111174	HepG2	liver:	n/a	n/a
18	CREB1	chrX:155110727-155111073	A549	lung:	n/a	n/a
19	CREB1	chrX:155110556-155111675	K562	blood:	n/a	chrX:155111461-155111474
20	CREB1	chrX:155110547-155111661	HepG2	liver:	n/a	chrX:155111461-155111474
21	CREB1	chrX:155102863-155103160	H1-hESC	embryonic stem cell:	n/a	n/a
22	CREB1	chrX:155102854-155103248	K562	blood:	n/a	n/a
23	CREB1	chrX:155110712-155111544	HepG2	liver:	n/a	chrX:155111461-155111474
24	CREB1	chrX:155110616-155111646	K562	blood:	n/a	chrX:155111461-155111474
25	CREB1	chrX:155110661-155111229	A549	lung:	n/a	n/a
26	CREB1	chrX:155110647-155111682	GM12878	blood:	n/a	chrX:155111461-155111474
27	CREB1	chrX:155110728-155111031	ECC-1	luminal epithelium:	n/a	n/a
28	CREB1	chrX:155110706-155111718	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
29	CREB1	chrX:155110725-155111683	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
30	CTCF	chrX:155094385-155094594	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chrX:155087356-155087532	T-47D	breast:	n/a	n/a
32	CTCF	chrX:155201438-155201603	SK-N-SH_RA	brain:	n/a	n/a
33	CTCF	chrX:155201182-155201189	GM10248	blood:	n/a	n/a
34	CTCF	chrX:155196596-155196888	GM12891	blood:	n/a	chrX:155196744-155196762 chrX:155196749-155196759 chrX:155196746-155196767 chrX:155196680-155196696 chrX:155196745-155196761
35	CTCF	chrX:155202797-155202834	GM19239	blood:	n/a	n/a
36	CTCF	chrX:155201396-155201689	A549	lung:	n/a	n/a
37	CTCF	chrX:155087363-155087509	MCF-7	breast:	n/a	n/a
38	CTCF	chrX:155094454-155094587	K562	blood:	n/a	n/a
39	CTCF	chrX:155196619-155196857	Fibrobl	skin:	n/a	chrX:155196744-155196762 chrX:155196749-155196759 chrX:155196746-155196767 chrX:155196680-155196696 chrX:155196745-155196761
40	CTCF	chrX:155196568-155196832	Lung_OC	lung:	n/a	chrX:155196744-155196762 chrX:155196749-155196759 chrX:155196746-155196767 chrX:155196680-155196696 chrX:155196745-155196761
41	CTCF	chrX:155196590-155196887	MCF-7	breast:	n/a	chrX:155196744-155196762 chrX:155196749-155196759 chrX:155196746-155196767 chrX:155196680-155196696 chrX:155196745-155196761
42	CTCF	chrX:155201847-155201904	GM10248	blood:	n/a	n/a
43	CTCF	chrX:155196554-155196962	K562	blood:	n/a	chrX:155196744-155196762 chrX:155196749-155196759 chrX:155196746-155196767 chrX:155196680-155196696 chrX:155196745-155196761
44	CTCF	chrX:155094158-155094860	SK-N-SH	brain:	n/a	n/a
45	CTCF	chrX:155087374-155087579	GM10248	blood:	n/a	n/a
46	CTCF	chrX:155201419-155201607	HepG2	liver:	n/a	n/a
47	CTCF	chrX:155088584-155088640	GM10248	blood:	n/a	n/a
48	CTCF	chrX:155201447-155201453	GM10248	blood:	n/a	n/a
49	CTCF	chrX:155196596-155196855	GM12878	blood:	n/a	chrX:155196744-155196762 chrX:155196749-155196759 chrX:155196746-155196767 chrX:155196680-155196696 chrX:155196745-155196761
50	CTCF	chrX:155202472-155202549	GM19238	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMLHE-4	chrX:155208657-155208990	NONHSAT139249
2	lnc-VAMP7-2	chrX:155105299-155105548	NONHSAT139247
3	lnc-TMLHE-3	chrX:155058248-155059239	NONHSAT139246

No.	miRNA target gene	miRNA name	Chromosome Location
1	VAMP7	hsa-miR-1	chrX:155173195-155173215
2	VAMP7	hsa-miR-26b-5p	chrX:155172667-155172687
3	VAMP7	hsa-miR-93-5p	chrX:155172890-155172912

Variant related genes	Relation type
AMDP1	TF binding region
TCEB1P24	TF binding region
VAMP7	TF binding region
DPH3P2	TF binding region

Extended variants
information (count: 1849 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:1849 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113848733	chrX:155071207-155071208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs57441404	chrX:155071219-155071220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs191814010	chrX:155071266-155071267	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs140505680	chrX:155071326-155071327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs6567777	chrX:155071332-155071333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs5983796	chrX:155071400-155071401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs5983797	chrX:155071456-155071457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs149764616	chrX:155071532-155071533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs368552308	chrX:155071556-155071557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs145717724	chrX:155071559-155071560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs369239245	chrX:155071644-155071645	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs373667046	chrX:155071650-155071651	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs376683453	chrX:155071666-155071667	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184941069	chrX:155071692-155071693	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187862333	chrX:155071890-155071891	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs4617326	chrX:155071958-155071959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs4546815	chrX:155072193-155072194	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548718895	chrX:155072198-155072199	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs6642353	chrX:155072481-155072482	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs5983799	chrX:155072491-155072492	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141343870	chrX:155072496-155072497	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs6642241	chrX:155072623-155072624	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs546209653	chrX:155072677-155072678	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs189650940	chrX:155072701-155072702	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs368104292	chrX:155072732-155072733	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs181868674	chrX:155072775-155072776	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs183922141	chrX:155072787-155072788	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs188347506	chrX:155072811-155072812	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs370402465	chrX:155072942-155072943	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs190031634	chrX:155074803-155074804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs73638043	chrX:155074831-155074832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs185989940	chrX:155074848-155074849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs553266213	chrX:155074875-155074876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190548809	chrX:155074955-155074956	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs574764450	chrX:155074971-155074972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs181435732	chrX:155075021-155075022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs5983800	chrX:155075052-155075053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs373863548	chrX:155075103-155075104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs377163497	chrX:155075120-155075121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs375418804	chrX:155103803-155103804	Bivalent Enhancer ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs116200523	chrX:155103808-155103809	Bivalent Enhancer ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs185273453	chrX:155103814-155103815	Bivalent Enhancer ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs570026984	chrX:155103890-155103891	Bivalent Enhancer ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs190500570	chrX:155103955-155103956	Bivalent Enhancer ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs146147616	chrX:155104002-155104003	Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs148804742	chrX:155104031-155104032	Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs73638052	chrX:155104057-155104058	Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs199702295	chrX:155104140-155104141	Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs368868819	chrX:155104145-155104146	Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs181887580	chrX:155104147-155104148	Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:1696 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:155071200-155071600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chrX:155071200-155073000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chrX:155071600-155072600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chrX:155072600-155072800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chrX:155072600-155073000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chrX:155074800-155075200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:155103800-155104000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chrX:155103800-155105400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chrX:155104000-155104200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chrX:155104000-155104200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chrX:155104000-155104200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chrX:155104000-155104200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chrX:155104000-155104200	Active TSS	Brain Hippocampus Middle	brain
14	chrX:155104000-155104600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chrX:155104000-155104600	Active TSS	Brain Anterior Caudate	brain
16	chrX:155104000-155104600	Active TSS	Osteobl	bone
17	chrX:155104000-155104800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
18	chrX:155104000-155104800	Active TSS	Ovary	ovary
19	chrX:155104200-155104400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
20	chrX:155104200-155104400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
21	chrX:155104200-155104400	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chrX:155104200-155104600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chrX:155104200-155104600	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
24	chrX:155104200-155104600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chrX:155104200-155104600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
26	chrX:155104200-155104600	Bivalent Enhancer	Lung	lung
27	chrX:155104200-155104600	Flanking Active TSS	Pancreas	Pancrea
28	chrX:155104200-155104600	Active TSS	Right Atrium	heart
29	chrX:155104200-155104600	Active TSS	HMEC	breast
30	chrX:155104200-155104600	Active TSS	HSMMtube	muscle
31	chrX:155104200-155104800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
32	chrX:155104200-155104800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chrX:155104200-155104800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chrX:155104200-155104800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chrX:155104200-155104800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chrX:155104200-155104800	Active TSS	Muscle Satellite Cultured Cells	--
37	chrX:155104200-155104800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
38	chrX:155104200-155104800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chrX:155104200-155104800	Bivalent/Poised TSS	A549	lung
40	chrX:155104200-155104800	Active TSS	HepG2	liver
41	chrX:155104200-155104800	Active TSS	NHDF-Ad	bronchial
42	chrX:155104200-155104800	Active TSS	NHLF	lung
43	chrX:155104200-155105000	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chrX:155104200-155105000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chrX:155104400-155104600	Bivalent/Poised TSS	Primary monocytes fromperipheralblood	blood
46	chrX:155104400-155104600	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chrX:155104400-155104600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chrX:155104400-155104600	Bivalent Enhancer	Brain Germinal Matrix	brain
49	chrX:155104400-155104600	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chrX:155104400-155104600	Flanking Bivalent TSS/Enh	Left Ventricle	heart

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