Variant report
Variant | nsv530416 |
---|---|
Chromosome Location | chr13:66198235-67126195 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3803)
- CpG islands (count:794)
- Chromatin interactive region (count:54)
- LncRNA region (count:24)
- Mature miRNA region (count: 3)
- miRNA target sites (count:3)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr13:66886857-66887028 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr13:67024589-67024601 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr13:66643768-66644097 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr13:66651230-66651680 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr13:66713473-66713809 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr13:66650602-66650906 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr13:66648258-66648447 | K562 | blood: | n/a | n/a |
8 | ARID3A | chr13:66784968-66784973 | HepG2 | liver: | n/a | n/a |
9 | ATF1 | chr13:66990708-66990955 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr13:66648256-66648525 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr13:66999986-67000196 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr13:66643737-66644023 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr13:66650593-66650896 | K562 | blood: | n/a | n/a |
14 | ATF2 | chr13:66798630-66799137 | H1-hESC | embryonic stem cell: | n/a | n/a |
15 | ATF2 | chr13:66712423-66712799 | GM12878 | blood: | n/a | n/a |
16 | ATF3 | chr13:66886740-66887227 | A549 | lung: | n/a | n/a |
17 | BACH1 | chr13:67078100-67078397 | H1-hESC | embryonic stem cell: | n/a | chr13:67078231-67078245 |
18 | BATF | chr13:66712465-66712951 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr13:67052441-67052616 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr13:66712420-66712936 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr13:66702801-66703238 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr13:67081195-67081436 | GM12878 | blood: | n/a | n/a |
23 | BCL11A | chr13:66798709-66799125 | H1-hESC | embryonic stem cell: | n/a | n/a |
24 | BCL11A | chr13:66712457-66712949 | GM12878 | blood: | n/a | chr13:66712844-66712853 |
25 | BCL11A | chr13:66798756-66799093 | H1-hESC | embryonic stem cell: | n/a | n/a |
26 | BCL11A | chr13:66702875-66703088 | GM12878 | blood: | n/a | n/a |
27 | BCL11A | chr13:66712423-66713013 | GM12878 | blood: | n/a | chr13:66712844-66712853 |
28 | BCL11A | chr13:66702751-66703109 | GM12878 | blood: | n/a | n/a |
29 | BCL3 | chr13:66886752-66887345 | A549 | lung: | n/a | n/a |
30 | BCL3 | chr13:66886608-66887994 | A549 | lung: | n/a | n/a |
31 | BCLAF1 | chr13:66712465-66712857 | GM12878 | blood: | n/a | chr13:66712844-66712853 |
32 | BHLHE40 | chr13:66712457-66712998 | GM12878 | blood: | n/a | n/a |
33 | BHLHE40 | chr13:66902776-66902779 | K562 | blood: | n/a | n/a |
34 | BHLHE40 | chr13:66739043-66739104 | K562 | blood: | n/a | n/a |
35 | BHLHE40 | chr13:66212820-66213067 | GM12878 | blood: | n/a | n/a |
36 | BHLHE40 | chr13:66917482-66917943 | K562 | blood: | n/a | n/a |
37 | BHLHE40 | chr13:66648396-66648557 | K562 | blood: | n/a | n/a |
38 | BRCA1 | chr13:66878245-66878246 | Hela-S3 | cervix: | n/a | n/a |
39 | BRCA1 | chr13:67088395-67088424 | H1-hESC | embryonic stem cell: | n/a | n/a |
40 | BRCA1 | chr13:66712793-66712993 | GM12878 | blood: | n/a | n/a |
41 | CBX3 | chr13:66643667-66644035 | K562 | blood: | n/a | n/a |
42 | CBX3 | chr13:66861033-66861253 | K562 | blood: | n/a | n/a |
43 | CBX3 | chr13:66784784-66785224 | HCT-116 | colon: | n/a | n/a |
44 | CBX3 | chr13:66212653-66213113 | HCT-116 | colon: | n/a | n/a |
45 | CBX3 | chr13:66784811-66785347 | HCT-116 | colon: | n/a | n/a |
46 | CCNT2 | chr13:66589547-66589747 | K562 | blood: | n/a | n/a |
47 | CCNT2 | chr13:66617039-66617239 | K562 | blood: | n/a | n/a |
48 | CEBPB | chr13:66977771-66978130 | HepG2 | liver: | n/a | chr13:66977939-66977950 |
49 | CEBPB | chr13:66212723-66213083 | Hela-S3 | cervix: | n/a | n/a |
50 | CEBPB | chr13:67082251-67082727 | A549 | lung: | n/a | chr13:67082691-67082708 chr13:67082473-67082484 chr13:67082694-67082707 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:67101887-67101937 | K562 | blood: | n/a |
2 | chr13:67101887-67101937 | K562 | blood: | n/a |
3 | chr13:66583686-66583736 | HAEpiC | amniotic membrane: | n/a |
4 | chr13:67101887-67101937 | H1-hESC | embryonic stem cell: | embryo |
5 | chr13:66583583-66583633 | BE2_C | brain: | n/a |
6 | chr13:66983730-66983780 | SK-N-SH_RA | brain: | n/a |
7 | chr13:67101887-67101937 | AoSMC | blood vessel: | n/a |
8 | chr13:66919912-66919962 | HNPCEpiC | eye: | n/a |
9 | chr13:66981290-66981340 | GM12892 | blood: | n/a |
10 | chr13:66583583-66583633 | BJ | skin: | n/a |
11 | chr13:66929165-66929215 | ECC-1 | luminal epithelium: | n/a |
12 | chr13:66919912-66919962 | NB4 | blood: | n/a |
13 | chr13:66501111-66501161 | HRE | kidney: | n/a |
14 | chr13:66252177-66252227 | AG09309 | skin: | n/a |
15 | chr13:66583686-66583736 | HCF | heart: | n/a |
16 | chr13:66501111-66501161 | NT2-D1 | testis: | n/a |
17 | chr13:66929165-66929215 | AG04449 | skin: | fetal |
18 | chr13:66919912-66919962 | PrEC | prostate: | n/a |
19 | chr13:67101887-67101937 | MCF-7 | breast: | n/a |
20 | chr13:66983730-66983780 | SAEC | small airway: | n/a |
21 | chr13:67101887-67101937 | Caco-2 | colon: | n/a |
22 | chr13:66322551-66322601 | NHDF-neo | bronchial: | n/a |
23 | chr13:67101887-67101937 | AG10803 | skin: | n/a |
24 | chr13:66252177-66252227 | Hepatocyte | liver: | n/a |
25 | chr13:66252177-66252227 | RPTEC | kidney: | n/a |
26 | chr13:66981290-66981340 | ovcar-3 | ovarian: | n/a |
27 | chr13:66983730-66983780 | HEK293 | kidney: | embryo |
28 | chr13:66607275-66607325 | HCF | heart: | n/a |
29 | chr13:66501111-66501161 | HIPEpiC | eye: | n/a |
30 | chr13:66607275-66607325 | GM19239 | blood: | n/a |
31 | chr13:66981290-66981340 | HRCEpiC | kidney: | n/a |
32 | chr13:66252177-66252227 | PFSK-1 | brain: | n/a |
33 | chr13:66919912-66919962 | AG04450 | lung: | fetal |
34 | chr13:66252177-66252227 | NB4 | blood: | n/a |
35 | chr13:66878738-66878788 | HEK293 | kidney: | embryo |
36 | chr13:66583583-66583633 | NT2-D1 | testis: | n/a |
37 | chr13:67101887-67101937 | BE2_C | brain: | n/a |
38 | chr13:66929165-66929215 | GM12878 | blood: | n/a |
39 | chr13:66878738-66878788 | AG04450 | lung: | fetal |
40 | chr13:66607275-66607325 | AG09319 | gingival: | n/a |
41 | chr13:66878738-66878788 | PANC-1 | pancreas: | n/a |
42 | chr13:67101887-67101937 | MCF10A-Er-Src | breast: | n/a |
43 | chr13:66322551-66322601 | CMK | blood: | n/a |
44 | chr13:66583583-66583633 | HCM | heart: | n/a |
45 | chr13:66501111-66501161 | HCPEpiC | choroid plexus: | n/a |
46 | chr13:66501111-66501161 | AG04449 | skin: | fetal |
47 | chr13:66322551-66322601 | SKMC | muscle: | n/a |
48 | chr13:66981290-66981340 | HCPEpiC | choroid plexus: | n/a |
49 | chr13:66583583-66583633 | HMEC | breast: | n/a |
50 | chr13:66607275-66607325 | SK-N-SH | brain: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:66423397..66425712-chr13:66435469..66437961,2 | K562 | blood: | |
2 | chr13:66725373..66727381-chr13:66728791..66730521,2 | K562 | blood: | |
3 | chr13:66377468..66378968-chr8:43092929..43094908,2 | MCF-7 | breast: | |
4 | chr13:66296680..66298971-chr13:66300615..66302352,2 | MCF-7 | breast: | |
5 | chr13:66918574..66921439-chr13:66945401..66948264,2 | MCF-7 | breast: | |
6 | chr13:66296680..66298971-chr13:66300615..66302352,2 | MCF-7 | breast: | |
7 | chr13:67109100..67110769-chr13:67114510..67116820,2 | K562 | blood: | |
8 | chr13:66879908..66881972-chr13:66902872..66904425,2 | K562 | blood: | |
9 | chr13:67065287..67067165-chr13:67261665..67264552,2 | MCF-7 | breast: | |
10 | chr13:67124095..67126180-chr13:67127910..67129667,2 | K562 | blood: | |
11 | chr13:66500564..66501578-chr13:66540848..66541721,3 | MCF-7 | breast: | |
12 | chr13:66901663..66903255-chr13:66906195..66907818,2 | K562 | blood: | |
13 | chr13:66582815..66585533-chr13:66632919..66634778,2 | K562 | blood: | |
14 | chr13:66423397..66425712-chr13:66435469..66437961,2 | K562 | blood: | |
15 | chr13:66782802..66785217-chr13:66787154..66788780,2 | MCF-7 | breast: | |
16 | chr13:66782802..66785217-chr13:66787154..66788780,2 | MCF-7 | breast: | |
17 | chr13:66879908..66881972-chr13:66902872..66904425,2 | K562 | blood: | |
18 | chr13:66622814..66624893-chr13:66627297..66630041,2 | K562 | blood: | |
19 | chr13:67109100..67110769-chr13:67114510..67116820,2 | K562 | blood: | |
20 | chr13:66355137..66357196-chr13:66362374..66364366,2 | K562 | blood: | |
21 | chr13:67027655..67028155-chr8:43092779..43093429,2 | MCF-7 | breast: | |
22 | chr13:67118715..67120725-chr13:67121848..67124669,2 | K562 | blood: | |
23 | chr13:66230680..66231446-chr13:66540896..66541772,3 | MCF-7 | breast: | |
24 | chr13:67090368..67092830-chr13:67094169..67095769,2 | K562 | blood: | |
25 | chr13:66918574..66921439-chr13:66945401..66948264,2 | MCF-7 | breast: | |
26 | chr13:67090368..67092830-chr13:67094169..67095769,2 | K562 | blood: | |
27 | chr13:66909684..66911530-chr13:66916300..66919201,2 | K562 | blood: | |
28 | chr13:66557440..66557967-chr13:82054818..82055319,2 | MCF-7 | breast: | |
29 | chr13:66901663..66903255-chr13:66906195..66907818,2 | K562 | blood: | |
30 | chr13:66824109..66824810-chr16:71735977..71736631,2 | MCF-7 | breast: | |
31 | chr13:65045929..65046727-chr13:66212514..66213321,2 | MCF-7 | breast: | |
32 | chr13:66230680..66231446-chr13:66540896..66541772,3 | MCF-7 | breast: | |
33 | chr13:66725373..66727381-chr13:66728791..66730521,2 | K562 | blood: | |
34 | chr13:67066396..67067204-chr13:67263202..67263856,3 | MCF-7 | breast: | |
35 | chr13:66909684..66911530-chr13:66916300..66919201,2 | K562 | blood: | |
36 | chr13:66606276..66609107-chr13:66609295..66610970,2 | MCF-7 | breast: | |
37 | chr10:29694023..29695542-chr13:67026635..67028155,2 | MCF-7 | breast: | |
38 | chr13:66363582..66364363-chr21:32786060..32786817,2 | MCF-7 | breast: | |
39 | chr13:66358245..66360880-chr16:71346372..71347872,2 | MCF-7 | breast: | |
40 | chr13:65020257..65021157-chr13:66212532..66213123,2 | MCF-7 | breast: | |
41 | chr12:28240626..28241152-chr13:66662383..66662898,2 | MCF-7 | breast: | |
42 | chr13:66606276..66609107-chr13:66609295..66610970,2 | MCF-7 | breast: | |
43 | chr13:66677587..66680337-chr13:66682446..66685267,2 | K562 | blood: | |
44 | chr13:66978910..66981496-chr13:66983194..66984802,2 | K562 | blood: | |
45 | chr13:66978910..66981496-chr13:66983194..66984802,2 | K562 | blood: | |
46 | chr13:66500564..66501578-chr13:66540848..66541721,3 | MCF-7 | breast: | |
47 | chr13:67065181..67066891-chr13:67075366..67077021,2 | MCF-7 | breast: | |
48 | chr13:66677587..66680337-chr13:66682446..66685267,2 | K562 | blood: | |
49 | chr13:67065181..67066891-chr13:67075366..67077021,2 | MCF-7 | breast: | |
50 | chr13:66622814..66624893-chr13:66627297..66630041,2 | K562 | blood: |
(count:24 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-AL445989.1-10 | chr13:66515195-66515334 | XLOC_010415 |
2 | lnc-AL445989.1-26 | chr13:66843129-66844590 | NONHSAT034207 |
3 | lnc-AL445989.1-9 | chr13:66510419-66510480 | XLOC_010414 |
4 | lnc-PCDH9-1 | chr13:66805874-66806206 | ENSG00000250631 |
5 | lnc-AL445989.1-13 | chr13:66878003-66878146 | ENSG00000234527.1 |
6 | lnc-AL445989.1-11 | chr13:66628093-66628119 | XLOC_010416 |
7 | lnc-AL445989.1-10 | chr13:66546596-66551943 | XLOC_010415 |
8 | lnc-AL445989.1-11 | chr13:66569993-66570140 | XLOC_010416 |
9 | lnc-AL445989.1-8 | chr13:66451989-66452351 | NONHSAT034197 |
10 | lnc-AL445989.1-8 | chr13:66449839-66449901 | ENSG00000234767 |
11 | lnc-PCDH9-6 | chr13:66430425-66430559 | NONHSAT034195 |
12 | lnc-AL445989.1-26 | chr13:66844520-66844603 | NONHSAT034208 |
13 | lnc-AL445989.1-8 | chr13:66449839-66449901 | NONHSAT034197 |
14 | lnc-AL445989.1-8 | chr13:66440195-66440400 | NONHSAT034197 |
15 | lnc-AL445989.1-8 | chr13:66451989-66452351 | ENSG00000234767 |
16 | lnc-PCDH9-1 | chr13:66718649-66718753 | ENSG00000250631 |
17 | lnc-AL445989.1-26 | chr13:66851684-66852109 | NONHSAT034208 |
18 | lnc-AL445989.1-26 | chr13:66846998-66847098 | NONHSAT034208 |
19 | lnc-AL445989.1-11 | chr13:66569686-66569896 | XLOC_010416 |
20 | lnc-AL445989.1-8 | chr13:66440306-66440375 | ENSG00000234767 |
21 | lnc-PCDH9-1 | chr13:66715500-66715905 | ENSG00000250631 |
22 | lnc-AL445989.1-9 | chr13:66503637-66503853 | XLOC_010414 |
23 | lnc-AL445989.1-13 | chr13:66897306-66897693 | ENSG00000234527.1 |
24 | lnc-PCDH9-6 | chr13:66410063-66410464 | NONHSAT034195 |
miRNA name | Chromosome Location | mirBase accession |
---|---|---|
hsa-miR-4704-5p | chr13:66792391-66792412 | MIMAT0019803 |
hsa-miR-548x-3p | chr13:66540484-66540503 | MIMAT0015081 |
hsa-miR-4704-3p | chr13:66792428-66792449 | MIMAT0019804 |
(count:3 , 50 per page) page:
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No. | miRNA target gene | miRNA name | Chromosome Location | mirBase accession |
---|---|---|---|---|
1 | PCDH9 | hsa-miR-155-5p | chr13:66877756-66877779 | |
2 | PCDH9 | hsa-miR-155-5p | chr13:66878321-66878343 | |
3 | PCDH9 | hsa-miR-155-5p | chr13:66878327-66878320 |
Variant related genes | Relation type |
---|---|
MIR4704 | TF binding region |
TRIM60P19 | TF binding region |
PCDH9-AS1 | TF binding region |
LINC01052 | TF binding region |
MIR548X2 | TF binding region |
HNRNPA3P5 | TF binding region |
ENSG00000221685 | TF binding region |
MIR4704 | CpG island |
TRIM60P19 | CpG island |
PCDH9-AS1 | CpG island |
LINC01052 | CpG island |
MIR548X2 | CpG island |
HNRNPA3P5 | CpG island |
ENSG00000221685 | CpG island |
ENSG00000236565 | chromatin interactions |
INO80D | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs565956306 | chr13:66199485-66199486 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs574820615 | chr13:66199508-66199509 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs76830803 | chr13:66199613-66199614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs114557975 | chr13:66199631-66199632 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs572807078 | chr13:66199647-66199648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs147944896 | chr13:66199654-66199655 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs184190389 | chr13:66199655-66199656 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs576116428 | chr13:66199670-66199671 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs530535386 | chr13:66199715-66199716 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs544255585 | chr13:66199763-66199764 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs201867366 | chr13:66199823-66199824 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs76496274 | chr13:66199832-66199833 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs398023136 | chr13:66199835-66199836 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs200659273 | chr13:66199836-66199837 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs115603066 | chr13:66199849-66199850 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs530058117 | chr13:66199872-66199873 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs73496654 | chr13:66199889-66199890 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
18 | rs186608336 | chr13:66199979-66199980 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs532474777 | chr13:66199983-66199984 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs73496655 | chr13:66199996-66199997 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
21 | rs569289540 | chr13:66200017-66200018 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs200971501 | chr13:66200027-66200028 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs3072990 | chr13:66200029-66200030 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs397838473 | chr13:66200043-66200044 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs537825814 | chr13:66200051-66200052 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs530115046 | chr13:66200115-66200116 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs554588706 | chr13:66200170-66200171 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs191976369 | chr13:66200177-66200178 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs964666 | chr13:66200191-66200192 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs554025873 | chr13:66200209-66200210 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs577389262 | chr13:66200213-66200214 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs140094699 | chr13:66200229-66200230 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs560250696 | chr13:66200233-66200234 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs964667 | chr13:66200316-66200317 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs964668 | chr13:66200362-66200363 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs575459849 | chr13:66200372-66200373 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs544218509 | chr13:66200378-66200379 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs74091294 | chr13:66200379-66200380 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs182796498 | chr13:66200383-66200384 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs187117245 | chr13:66200395-66200396 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs191931005 | chr13:66200396-66200397 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs532320620 | chr13:66200432-66200433 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs145516018 | chr13:66200441-66200442 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs569329225 | chr13:66200456-66200457 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs531730508 | chr13:66200494-66200495 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs200744776 | chr13:66200509-66200510 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs147698703 | chr13:66200531-66200532 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs182180265 | chr13:66200535-66200536 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs534194530 | chr13:66200536-66200537 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs554462665 | chr13:66200653-66200654 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Prostate cancer | 16705090 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 22495311 | CNVD |
Chordoma | 21602918 | CNVD |
Bladder cancer | 21949216 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 21518781 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Intracranial aneurysm | 19064780 | CNVD |
Breast cancer | 19287154 | CNVD |
Acute myeloid leukemia | 18379011 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Ependymoma | 16718352 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16272173 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Breast cancer | 17133270 | CNVD |
Myoepithelioma | 18604193 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Prostate cancer | 16573809 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Paraganglioma | 21461997 | CNVD |
Pheochromocytoma | 21461997 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Prostate cancer | 17245344 | CNVD |
Prostate cancer | 18632612 | CNVD |
Colorectal cancer | 21586687 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Developmental delay | 21147756 | CNVD |
Melanoma | 18172304 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Merkel cell carcinoma | 19020549 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Breast cancer | 21858162 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Gastric cancer | 17908304 | CNVD |
Glioblastoma multiforme | 21750150 | CNVD |
Breast cancer | 17603634 | CNVD |
Cancer | 21183584 | CNVD |
Breast cancer | 17393978 | CNVD |
Splenic marginal zone lymphoma | 18492102 | CNVD |
Liposarcoma | 21253554 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
abnormal development | 18461090 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Prostate cancer | 16461572 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
Intellectual disability | 21811512 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Melanoma | 20877625 | CNVD |
T-cell lymphomas | 22341440 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Prostate cancer | 22341455 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:66199400-66199600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr13:66199600-66200200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr13:66200200-66200800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
4 | chr13:66200800-66204800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
5 | chr13:66204800-66205200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
6 | chr13:66205200-66205400 | Flanking Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
7 | chr13:66205200-66205600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
8 | chr13:66205400-66205600 | Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
9 | chr13:66205600-66205800 | Flanking Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
10 | chr13:66210400-66210800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
11 | chr13:66210800-66216800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
12 | chr13:66216800-66217000 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
13 | chr13:66216800-66218000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
14 | chr13:66217000-66217200 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
15 | chr13:66217000-66218000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
16 | chr13:66217200-66217400 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
17 | chr13:66217400-66217800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
18 | chr13:66221200-66221600 | Enhancers | Fetal Brain Female | brain |
19 | chr13:66227400-66228200 | Enhancers | Fetal Brain Male | brain |
20 | chr13:66227600-66228000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
21 | chr13:66227800-66228400 | Enhancers | Fetal Brain Female | brain |
22 | chr13:66231800-66232800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
23 | chr13:66232000-66234000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
24 | chr13:66232200-66232600 | Enhancers | Adipose Nuclei | Adipose |
25 | chr13:66244200-66245000 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
26 | chr13:66249600-66249800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
27 | chr13:66251800-66252800 | Enhancers | Osteobl | bone |
28 | chr13:66252000-66252400 | Enhancers | HUES6 Cell Line | embryonic stem cell |
29 | chr13:66252000-66252400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
30 | chr13:66252000-66252400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
31 | chr13:66252000-66252600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
32 | chr13:66252000-66252600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
33 | chr13:66252000-66252600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
34 | chr13:66252200-66252600 | Enhancers | Hela-S3 | cervix |
35 | chr13:66252600-66253000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
36 | chr13:66252800-66253200 | Weak transcription | Osteobl | bone |
37 | chr13:66253000-66253600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
38 | chr13:66253200-66253800 | Enhancers | Osteobl | bone |
39 | chr13:66260600-66267000 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
40 | chr13:66263200-66267000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
41 | chr13:66267000-66267200 | Active TSS | Primary T helper memory cells from peripheral blood 1 | blood |
42 | chr13:66267000-66267600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
43 | chr13:66267000-66267600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
44 | chr13:66284600-66285200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
45 | chr13:66298000-66298800 | Enhancers | Dnd41 | blood |
46 | chr13:66298200-66298600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
47 | chr13:66298200-66298600 | Enhancers | Fetal Stomach | stomach |
48 | chr13:66298200-66298800 | Enhancers | Muscle Satellite Cultured Cells | -- |
49 | chr13:66298200-66298800 | Enhancers | Fetal Kidney | kidney |
50 | chr13:66298200-66298800 | Enhancers | NHDF-Ad | bronchial |