Variant report

Variant	nsv532073
Chromosome Location	chr6:162262196-162425681
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
2	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
3	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
4	chr6:162274815..162277621-chr6:162282085..162283805,2	K562	blood:
5	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
6	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
7	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
8	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
9	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
10	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
11	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
12	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
13	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
14	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
15	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
16	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
17	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
18	chr6:162274815..162277621-chr6:162282085..162283805,2	K562	blood:
19	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
20	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
21	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:

No data

Extended variants
information (count: 6663 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:6663 , 50 per page) page: 1 2 3 4 5 6 7 ... 134

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553417977	chr6:162262218-162262219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs78355200	chr6:162262235-162262236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539126181	chr6:162262258-162262259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs6919629	chr6:162262263-162262264	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs571107797	chr6:162262266-162262267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs75052498	chr6:162262289-162262290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs567952759	chr6:162262304-162262305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534949523	chr6:162262350-162262351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs142296484	chr6:162262357-162262358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs373579630	chr6:162262358-162262359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183375286	chr6:162262362-162262363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574816846	chr6:162262383-162262384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs369909525	chr6:162262385-162262386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570350562	chr6:162262386-162262387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs35323590	chr6:162262399-162262400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs539810483	chr6:162262408-162262409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs559729888	chr6:162262438-162262439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs116937390	chr6:162262443-162262444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs539348377	chr6:162262457-162262458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs79107925	chr6:162262471-162262472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374863265	chr6:162262492-162262493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs6905168	chr6:162262506-162262507	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs531510444	chr6:162262538-162262539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548424258	chr6:162262601-162262602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs138847661	chr6:162262633-162262634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs527591725	chr6:162262664-162262665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs370500629	chr6:162262703-162262704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546968862	chr6:162262766-162262767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187913334	chr6:162262827-162262828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538699090	chr6:162262852-162262853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs553270538	chr6:162262889-162262890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs117379916	chr6:162262894-162262895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538407120	chr6:162262925-162262926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs78931796	chr6:162262945-162262946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs571657339	chr6:162262954-162262955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs535857507	chr6:162262955-162262956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192263621	chr6:162262990-162262991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576848089	chr6:162262993-162262994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182881728	chr6:162263003-162263004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs576754393	chr6:162263009-162263010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140840443	chr6:162263020-162263021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187769002	chr6:162263039-162263040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576071565	chr6:162263073-162263074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542003411	chr6:162263078-162263079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs55891975	chr6:162263083-162263084	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs55897349	chr6:162263127-162263128	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs574101512	chr6:162263157-162263158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564257584	chr6:162263160-162263161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs60033094	chr6:162263185-162263186	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs192339444	chr6:162263212-162263213	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:546 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162258200-162265600	Weak transcription	Pancreas	Pancrea
2	chr6:162259800-162263200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:162260200-162265600	Weak transcription	Gastric	stomach
4	chr6:162260400-162263600	Weak transcription	Fetal Thymus	thymus
5	chr6:162260600-162265800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:162261200-162268800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:162261400-162264000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:162263200-162263400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:162263400-162263800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:162263600-162264400	Enhancers	Fetal Thymus	thymus
11	chr6:162263800-162264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:162264200-162264400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:162265600-162266400	Enhancers	Gastric	stomach
14	chr6:162265600-162266400	Enhancers	Pancreas	Pancrea
15	chr6:162265800-162266000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:162268800-162269000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:162268800-162269200	Enhancers	Liver	Liver
18	chr6:162269000-162269200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:162269000-162271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:162269800-162270000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:162269800-162270000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:162270000-162271800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:162270000-162271800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:162271200-162271400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:162271600-162272000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:162271800-162272200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:162271800-162272200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:162271800-162272200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:162271800-162272200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:162271800-162272400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:162271800-162272400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:162272000-162272200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:162272000-162272200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:162272200-162278200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:162273800-162275000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:162273800-162275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:162278200-162278400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:162278200-162278600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr6:162278200-162279200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:162278400-162278800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:162278400-162279800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:162278400-162279800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:162278400-162279800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr6:162278600-162279400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:162278800-162279200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:162279200-162279800	Enhancers	H9 Cell Line	embryonic stem cell
47	chr6:162279200-162283200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:162279400-162279600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:162279400-162279800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr6:162279400-162279800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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