Variant report

Variant	nsv533445
Chromosome Location	chr2:39412970-39605266
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1596)
CpG islands
(count:855)
Chromatin interactive
region (count:104)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1596 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr2:39565636-39565931	K562	blood:	n/a	n/a
2	ARID3A	chr2:39456953-39457265	K562	blood:	n/a	n/a
3	ARID3A	chr2:39455135-39455832	HepG2	liver:	n/a	n/a
4	ARID3A	chr2:39475252-39475385	HepG2	liver:	n/a	n/a
5	ARID3A	chr2:39455201-39455602	K562	blood:	n/a	n/a
6	ARID3A	chr2:39456608-39457299	HepG2	liver:	n/a	n/a
7	ARID3A	chr2:39444054-39444406	HepG2	liver:	n/a	n/a
8	ATF1	chr2:39457006-39457315	K562	blood:	n/a	n/a
9	ATF1	chr2:39604713-39605115	K562	blood:	n/a	n/a
10	ATF1	chr2:39603002-39603246	K562	blood:	n/a	n/a
11	ATF2	chr2:39604601-39605099	GM12878	blood:	n/a	n/a
12	ATF2	chr2:39604626-39605181	GM12878	blood:	n/a	n/a
13	ATF2	chr2:39443895-39444409	GM12878	blood:	n/a	n/a
14	ATF2	chr2:39592014-39592651	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr2:39456985-39457593	A549	lung:	n/a	n/a
16	ATF3	chr2:39456946-39457674	A549	lung:	n/a	n/a
17	ATF3	chr2:39461895-39462237	K562	blood:	n/a	n/a
18	ATF3	chr2:39429828-39430157	K562	blood:	n/a	n/a
19	BACH1	chr2:39430398-39430404	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr2:39429977-39429997	H1-hESC	embryonic stem cell:	n/a	n/a
21	BATF	chr2:39452811-39453080	GM12878	blood:	n/a	n/a
22	BATF	chr2:39452811-39453099	GM12878	blood:	n/a	n/a
23	BATF	chr2:39429896-39430127	GM12878	blood:	n/a	chr2:39430004-39430014 chr2:39430007-39430018 chr2:39430008-39430018
24	BATF	chr2:39429854-39430177	GM12878	blood:	n/a	chr2:39430004-39430014 chr2:39430007-39430018 chr2:39430008-39430018
25	BATF	chr2:39416281-39416512	GM12878	blood:	n/a	n/a
26	BATF	chr2:39444021-39444287	GM12878	blood:	n/a	n/a
27	BATF	chr2:39493258-39493611	GM12878	blood:	n/a	chr2:39493418-39493429
28	BCL11A	chr2:39592276-39592551	H1-hESC	embryonic stem cell:	n/a	n/a
29	BCL11A	chr2:39429871-39430104	H1-hESC	embryonic stem cell:	n/a	chr2:39430007-39430016 chr2:39430006-39430015
30	BCL11A	chr2:39604744-39605055	GM12878	blood:	n/a	n/a
31	BCL11A	chr2:39443939-39444312	GM12878	blood:	n/a	chr2:39444054-39444063
32	BCLAF1	chr2:39604580-39605152	GM12878	blood:	n/a	n/a
33	BDP1	chr2:39457022-39457396	Hela-S3	cervix:	n/a	n/a
34	BHLHE40	chr2:39604740-39605051	K562	blood:	n/a	n/a
35	BHLHE40	chr2:39455247-39455761	HepG2	liver:	n/a	n/a
36	BHLHE40	chr2:39492072-39492073	GM12878	blood:	n/a	n/a
37	BHLHE40	chr2:39443799-39444353	K562	blood:	n/a	n/a
38	BHLHE40	chr2:39444019-39444361	HepG2	liver:	n/a	n/a
39	BHLHE40	chr2:39604270-39604273	GM12878	blood:	n/a	n/a
40	CBX3	chr2:39456926-39457354	K562	blood:	n/a	n/a
41	CBX3	chr2:39424216-39424486	K562	blood:	n/a	n/a
42	CBX3	chr2:39586345-39587251	K562	blood:	n/a	n/a
43	CBX3	chr2:39586548-39587042	HCT-116	colon:	n/a	n/a
44	CBX3	chr2:39589717-39590155	HCT-116	colon:	n/a	n/a
45	CBX3	chr2:39586565-39587203	K562	blood:	n/a	n/a
46	CBX3	chr2:39604601-39605109	K562	blood:	n/a	n/a
47	CBX3	chr2:39587459-39587917	K562	blood:	n/a	n/a
48	CBX3	chr2:39587491-39587917	K562	blood:	n/a	n/a
49	CBX3	chr2:39424105-39424500	K562	blood:	n/a	n/a
50	CCNT2	chr2:39598280-39598370	K562	blood:	n/a	n/a

(count:855 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:39455859-39455909	AG04449	skin:	fetal
2	chr2:39455859-39455909	AG04449	skin:	fetal
3	chr2:39475086-39475136	HRE	kidney:	n/a
4	chr2:39472684-39472734	HCF	heart:	n/a
5	chr2:39471182-39471232	Hepatocyte	liver:	n/a
6	chr2:39470750-39470800	U87	brain:	n/a
7	chr2:39472197-39472247	HepG2	liver:	n/a
8	chr2:39471028-39471078	HIPEpiC	eye:	n/a
9	chr2:39455859-39455909	HRPEpiC	eye:	n/a
10	chr2:39455859-39455909	ovcar-3	ovarian:	n/a
11	chr2:39471028-39471078	AG04449	skin:	fetal
12	chr2:39455859-39455909	NT2-D1	testis:	n/a
13	chr2:39472197-39472247	CMK	blood:	n/a
14	chr2:39471028-39471078	HCPEpiC	choroid plexus:	n/a
15	chr2:39455859-39455909	HL-60	blood:	n/a
16	chr2:39467276-39467326	ProgFib	skin:	n/a
17	chr2:39472684-39472734	MCF-7	breast:	n/a
18	chr2:39475086-39475136	HCPEpiC	choroid plexus:	n/a
19	chr2:39455859-39455909	RPTEC	kidney:	n/a
20	chr2:39472684-39472734	Jurkat	blood:	n/a
21	chr2:39470750-39470800	MCF10A-Er-Src	breast:	n/a
22	chr2:39475086-39475136	AG04449	skin:	fetal
23	chr2:39455859-39455909	HCF	heart:	n/a
24	chr2:39467276-39467326	HRCEpiC	kidney:	n/a
25	chr2:39470743-39470793	AG04449	skin:	fetal
26	chr2:39470743-39470793	Hepatocyte	liver:	n/a
27	chr2:39471182-39471232	BE2_C	brain:	n/a
28	chr2:39467276-39467326	Hepatocyte	liver:	n/a
29	chr2:39467276-39467326	A549	lung:	n/a
30	chr2:39455859-39455909	HAEpiC	amniotic membrane:	n/a
31	chr2:39455859-39455909	SAEC	small airway:	n/a
32	chr2:39455365-39455415	GM12892	blood:	n/a
33	chr2:39597028-39597078	AoSMC	blood vessel:	n/a
34	chr2:39470750-39470800	HepG2	liver:	n/a
35	chr2:39471182-39471232	ovcar-3	ovarian:	n/a
36	chr2:39471028-39471078	RPTEC	kidney:	n/a
37	chr2:39455859-39455909	HIPEpiC	eye:	n/a
38	chr2:39472684-39472734	PANC-1	pancreas:	n/a
39	chr2:39493603-39493653	HL-60	blood:	n/a
40	chr2:39472684-39472734	AG04450	lung:	fetal
41	chr2:39471028-39471078	HCT-116	colon:	n/a
42	chr2:39455365-39455415	AG09319	gingival:	n/a
43	chr2:39472684-39472734	Caco-2	colon:	n/a
44	chr2:39455859-39455909	SKMC	muscle:	n/a
45	chr2:39475086-39475136	NT2-D1	testis:	n/a
46	chr2:39430867-39430917	HCF	heart:	n/a
47	chr2:39472197-39472247	GM06990	blood:	n/a
48	chr2:39455365-39455415	PFSK-1	brain:	n/a
49	chr2:39493603-39493653	NH-A	brain:	n/a
50	chr2:39470750-39470800	HNPCEpiC	eye:	n/a

(count:104 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr2:39348043..39352382-chr2:39450241..39456710,6	K562	blood:
2	chr2:39286217..39287588-chr2:39454990..39455891,11	K562	blood:
3	chr2:39540552..39542645-chr2:39544069..39547445,3	K562	blood:
4	chr2:39411786..39413568-chr2:39436502..39439076,2	MCF-7	breast:
5	chr2:39468106..39472763-chr2:39473661..39477001,5	MCF-7	breast:
6	chr2:39296064..39296618-chr2:39455002..39455698,2	MCF-7	breast:
7	chr2:39347298..39348058-chr2:39454988..39455716,3	MCF-7	breast:
8	chr2:38976615..38978955-chr2:39458878..39460912,2	K562	blood:
9	chr2:39441442..39443527-chr2:39448298..39450542,2	K562	blood:
10	chr2:39286171..39287115-chr2:39452326..39453171,2	MCF-7	breast:
11	chr2:39490995..39493794-chr2:39495082..39499421,5	K562	blood:
12	chr2:39581524..39583959-chr2:39586784..39588300,2	MCF-7	breast:
13	chr2:39346444..39348213-chr2:39455953..39458743,3	MCF-7	breast:
14	chr2:39596692..39599194-chr2:39603552..39605779,2	K562	blood:
15	chr2:39410714..39412628-chr2:39417089..39419246,2	MCF-7	breast:
16	chr2:39594087..39595987-chr2:39607916..39609547,2	MCF-7	breast:
17	chr2:39531304..39535719-chr2:39536825..39539603,4	K562	blood:
18	chr2:39560253..39562366-chr2:39574869..39577046,2	K562	blood:
19	chr2:39556941..39559571-chr2:39560724..39563297,3	K562	blood:
20	chr2:39299894..39301670-chr2:39450132..39452854,2	MCF-7	breast:
21	chr2:39548716..39551632-chr2:39563065..39564786,2	MCF-7	breast:
22	chr2:39403902..39406295-chr2:39414907..39416549,2	MCF-7	breast:
23	chr2:39346582..39349686-chr2:39454756..39458494,4	MCF-7	breast:
24	chr2:39460764..39463142-chr2:39468024..39469641,2	K562	blood:
25	chr2:39346597..39349702-chr2:39453282..39455044,3	MCF-7	breast:
26	chr2:39286437..39287460-chr2:39456992..39457994,4	MCF-7	breast:
27	chr2:39531304..39535719-chr2:39536825..39539603,4	K562	blood:
28	chr2:39554923..39556541-chr2:39556726..39558880,2	MCF-7	breast:
29	chr2:39262956..39263678-chr2:39457038..39457575,2	MCF-7	breast:
30	chr2:39575333..39576889-chr2:39590648..39593621,2	K562	blood:
31	chr2:39569119..39570627-chr2:39583431..39586281,2	K562	blood:
32	chr2:39556058..39558190-chr2:39561076..39562731,2	MCF-7	breast:
33	chr2:39596692..39599194-chr2:39603552..39605779,2	K562	blood:
34	chr2:39346079..39347931-chr2:39453857..39455685,2	K562	blood:
35	chr2:39351404..39352119-chr2:39454960..39455522,2	MCF-7	breast:
36	chr2:39411786..39413568-chr2:39436502..39439076,2	MCF-7	breast:
37	chr2:39601552..39609752-chr2:39662569..39667062,10	MCF-7	breast:
38	chr2:39556941..39559571-chr2:39560724..39563297,3	K562	blood:
39	chr2:39345837..39348382-chr2:39447028..39448859,2	MCF-7	breast:
40	chr2:39569119..39570627-chr2:39583431..39586281,2	K562	blood:
41	chr2:39499119..39502094-chr2:39503052..39505530,2	K562	blood:
42	chr2:39286188..39287216-chr2:39454531..39455924,7	MCF-7	breast:
43	chr2:39441442..39443527-chr2:39448298..39450542,2	K562	blood:
44	chr2:39441692..39443732-chr2:39444876..39447459,3	K562	blood:
45	chr2:39442096..39444486-chr2:39445586..39448502,3	MCF-7	breast:
46	chr2:39604271..39606896-chr2:39836073..39838950,2	K562	blood:
47	chr2:39460764..39463142-chr2:39468024..39469641,2	K562	blood:
48	chr2:39554819..39557461-chr2:39561282..39564126,2	K562	blood:
49	chr2:39556058..39558190-chr2:39561076..39562731,2	MCF-7	breast:
50	chr2:39441692..39443732-chr2:39444876..39447459,3	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM178-4	chr2:39599228-39599355	l_1814_chr2:39518006-39558253_76bGuttman_hLF
2	lnc-CDKL4-3	chr2:39511169-39511421	expReg_chr2_3022_-
3	lnc-TMEM178-4	chr2:39534902-39535010	l_1814_chr2:39518006-39558253_76bGuttman_hLF
4	lnc-TMEM178-4	chr2:39597776-39597797	l_1814_chr2:39518006-39558253_76bGuttman_hLF
5	lnc-TMEM178-4	chr2:39534484-39534610	l_1814_chr2:39518006-39558253_76bGuttman_hLF
6	lnc-MAP4K3-1	chr2:39473220-39473335	NONHSAT070223
7	lnc-TMEM178-4	chr2:39555172-39558253	l_1814_chr2:39518006-39558253_76bGuttman_hLF
8	lnc-TMEM178-4	chr2:39597056-39597186	l_1814_chr2:39518006-39558253_76bGuttman_hLF
9	lnc-MAP4K3-1	chr2:39472055-39472707	NONHSAT070223
10	lnc-CDKL4-6	chr2:39550469-39550945	ENSG00000273035.1
11	lnc-TMEM178-4	chr2:39518007-39518182	l_1814_chr2:39518006-39558253_76bGuttman_hLF

No data

Variant related genes	Relation type
MAP4K3	TF binding region
ENSG00000273035	TF binding region
ENSG00000252473	TF binding region
CDKL4	TF binding region
MAP4K3	CpG island
ENSG00000273035	CpG island
ENSG00000252473	CpG island
CDKL4	CpG island
ENSG00000205111	chromatin interactions
ENSG00000115904	chromatin interactions
ENSG00000252473	chromatin interactions
ENSG00000273035	chromatin interactions
ENSG00000115875	chromatin interactions
ENSG00000152147	chromatin interactions
ENSG00000231312	chromatin interactions
ENSG00000270195	chromatin interactions
ENSG00000011566	chromatin interactions
ENSG00000163950	chromatin interactions

Extended variants
information (count: 8009 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:8009 , 50 per page) page: 1 2 3 4 5 6 7 ... 161

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184418530	chr2:39413024-39413025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs115125054	chr2:39413025-39413026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs144713663	chr2:39413028-39413029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11885294	chr2:39413037-39413038	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs189118717	chr2:39413083-39413084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552766799	chr2:39413110-39413111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs181778651	chr2:39413124-39413125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs79764717	chr2:39413132-39413133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374191197	chr2:39413145-39413146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs576418111	chr2:39413168-39413169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368304529	chr2:39413227-39413228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543736112	chr2:39413238-39413239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550457136	chr2:39413255-39413256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs73930534	chr2:39413258-39413259	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs529627268	chr2:39413276-39413277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547968477	chr2:39413277-39413278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs368857372	chr2:39413308-39413309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79590613	chr2:39413322-39413323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187181987	chr2:39413338-39413339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs140277621	chr2:39413362-39413363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs11682081	chr2:39413408-39413409	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs7592315	chr2:39413428-39413429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190809387	chr2:39413436-39413437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569515307	chr2:39413447-39413448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs180806906	chr2:39413729-39413730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567189496	chr2:39413785-39413786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs6758935	chr2:39413889-39413890	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
28	rs371609836	chr2:39413910-39413911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542181655	chr2:39413915-39413916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560561670	chr2:39413918-39413919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs531259541	chr2:39413958-39413959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs552744708	chr2:39414008-39414009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs549895902	chr2:39414010-39414011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs6544208	chr2:39414091-39414092	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs564922912	chr2:39414124-39414125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190003597	chr2:39414153-39414154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568980643	chr2:39414203-39414204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576478698	chr2:39414219-39414220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543762242	chr2:39414236-39414237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182585404	chr2:39414359-39414360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs555484633	chr2:39414372-39414373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs185702970	chr2:39414383-39414384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541794952	chr2:39414391-39414392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs145053017	chr2:39414405-39414406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533604018	chr2:39414406-39414407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544757862	chr2:39414439-39414440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563369585	chr2:39414459-39414460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs530535202	chr2:39414460-39414461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565955708	chr2:39414557-39414558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566927368	chr2:39414571-39414572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	22495311	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Breast cancer	21364760	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:3856 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39401800-39422600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:39405400-39415800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:39406200-39429800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:39410200-39413600	Weak transcription	HSMM	muscle
5	chr2:39411000-39423000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:39411000-39423200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:39411000-39448400	Weak transcription	HSMMtube	muscle
8	chr2:39417600-39417800	Enhancers	Gastric	stomach
9	chr2:39417800-39418800	Weak transcription	Gastric	stomach
10	chr2:39418800-39419000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:39418800-39419000	Enhancers	Gastric	stomach
12	chr2:39419000-39429400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:39419000-39455600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:39422400-39424800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:39422800-39423400	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr2:39423000-39423200	ZNF genes & repeats	Pancreas	Pancrea
17	chr2:39423000-39423400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:39423200-39423400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:39423200-39423400	Weak transcription	Pancreas	Pancrea
20	chr2:39423400-39423600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr2:39423400-39423600	Enhancers	Pancreas	Pancrea
22	chr2:39423400-39470800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:39423600-39429800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:39429400-39431400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:39429600-39429800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:39429600-39430000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr2:39429600-39430000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr2:39429600-39430000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr2:39429600-39431800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr2:39429800-39430000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr2:39429800-39430400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr2:39429800-39430600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr2:39429800-39431000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:39429800-39431000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:39429800-39431200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr2:39429800-39459600	Weak transcription	HSMM	muscle
37	chr2:39430000-39430400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr2:39430000-39430400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr2:39430000-39430400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr2:39430000-39430400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr2:39430000-39430600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr2:39430000-39431000	Enhancers	H9 Cell Line	embryonic stem cell
43	chr2:39430000-39431200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr2:39430000-39431200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr2:39430000-39431600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:39430000-39431600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:39430200-39431400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:39430200-39431800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr2:39430400-39431000	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr2:39430400-39431200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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