Variant report
Variant | nsv534005 |
---|---|
Chromosome Location | chr3:21387588-22003293 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2611)
- CpG islands (count:1650)
- Chromatin interactive region (count:162)
- LncRNA region (count:15)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr3:21573683-21573857 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr3:21592635-21592859 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr3:21581435-21581446 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr3:21567931-21568332 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr3:21528483-21528486 | K562 | blood: | n/a | n/a |
6 | ARID3A | chr3:21663005-21663101 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr3:21662923-21663161 | HepG2 | liver: | n/a | n/a |
8 | ARID3A | chr3:21573306-21573327 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr3:21770932-21771044 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr3:21568030-21568242 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr3:21573428-21573805 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr3:21592604-21592903 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr3:21440459-21440632 | K562 | blood: | n/a | n/a |
14 | ATF2 | chr3:21487560-21487918 | GM12878 | blood: | n/a | n/a |
15 | ATF3 | chr3:21447160-21447359 | K562 | blood: | n/a | n/a |
16 | BACH1 | chr3:21662970-21663192 | K562 | blood: | n/a | n/a |
17 | BACH1 | chr3:21669239-21669252 | H1-hESC | embryonic stem cell: | n/a | n/a |
18 | BACH1 | chr3:21792431-21793017 | H1-hESC | embryonic stem cell: | n/a | n/a |
19 | BACH1 | chr3:21558769-21558830 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | BACH1 | chr3:21662660-21663399 | H1-hESC | embryonic stem cell: | n/a | n/a |
21 | BATF | chr3:21487397-21487659 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr3:21526355-21526594 | GM12878 | blood: | n/a | chr3:21526456-21526467 |
23 | BCL11A | chr3:21585006-21585200 | H1-hESC | embryonic stem cell: | n/a | n/a |
24 | BCL11A | chr3:21487425-21487837 | GM12878 | blood: | n/a | chr3:21487787-21487796 |
25 | BHLHE40 | chr3:21704294-21704295 | K562 | blood: | n/a | n/a |
26 | BHLHE40 | chr3:21487490-21487873 | GM12878 | blood: | n/a | n/a |
27 | BHLHE40 | chr3:21584305-21584749 | K562 | blood: | n/a | n/a |
28 | BHLHE40 | chr3:21589714-21589739 | K562 | blood: | n/a | n/a |
29 | BHLHE40 | chr3:21592657-21592899 | K562 | blood: | n/a | n/a |
30 | BHLHE40 | chr3:21573457-21573641 | K562 | blood: | n/a | n/a |
31 | BHLHE40 | chr3:21825389-21825693 | K562 | blood: | n/a | n/a |
32 | BHLHE40 | chr3:21906985-21907006 | K562 | blood: | n/a | n/a |
33 | BRCA1 | chr3:21779878-21779890 | GM12878 | blood: | n/a | n/a |
34 | BRCA1 | chr3:21526090-21526158 | GM12878 | blood: | n/a | n/a |
35 | BRCA1 | chr3:21782837-21782869 | Hela-S3 | cervix: | n/a | n/a |
36 | BRCA1 | chr3:21483405-21483415 | GM12878 | blood: | n/a | n/a |
37 | BRCA1 | chr3:21558865-21558897 | HepG2 | liver: | n/a | n/a |
38 | CBX3 | chr3:21573374-21573782 | K562 | blood: | n/a | n/a |
39 | CBX3 | chr3:21583994-21584381 | K562 | blood: | n/a | n/a |
40 | CBX3 | chr3:21447117-21447403 | K562 | blood: | n/a | n/a |
41 | CCNT2 | chr3:21953424-21953558 | K562 | blood: | n/a | n/a |
42 | CCNT2 | chr3:21468599-21468799 | K562 | blood: | n/a | n/a |
43 | CCNT2 | chr3:21572196-21572328 | K562 | blood: | n/a | n/a |
44 | CCNT2 | chr3:21773207-21773377 | K562 | blood: | n/a | n/a |
45 | CCNT2 | chr3:21567997-21568235 | K562 | blood: | n/a | n/a |
46 | CEBPB | chr3:21956051-21956262 | A549 | lung: | n/a | chr3:21956123-21956136 chr3:21956123-21956134 |
47 | CEBPB | chr3:21840231-21840551 | IMR90 | lung: | n/a | chr3:21840366-21840377 |
48 | CEBPB | chr3:21943011-21943293 | MCF-7 | breast: | n/a | n/a |
49 | CEBPB | chr3:21495626-21495863 | IMR90 | lung: | n/a | chr3:21495766-21495777 |
50 | CEBPB | chr3:21961852-21962386 | Hela-S3 | cervix: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:21792543-21792593 | HCT-116 | colon: | n/a |
2 | chr3:21792248-21792298 | ovcar-3 | ovarian: | n/a |
3 | chr3:21706663-21706713 | PFSK-1 | brain: | n/a |
4 | chr3:21792543-21792593 | HCT-116 | colon: | n/a |
5 | chr3:21792248-21792298 | ovcar-3 | ovarian: | n/a |
6 | chr3:21706663-21706713 | PFSK-1 | brain: | n/a |
7 | chr3:21426059-21426109 | HEK293 | kidney: | embryo |
8 | chr3:21558209-21558259 | HEK293 | kidney: | embryo |
9 | chr3:21558209-21558259 | HRE | kidney: | n/a |
10 | chr3:21448012-21448062 | GM12891 | blood: | n/a |
11 | chr3:21790232-21790282 | HRCEpiC | kidney: | n/a |
12 | chr3:21792434-21792484 | HUVEC | blood vessel: | n/a |
13 | chr3:21832523-21832573 | NH-A | brain: | n/a |
14 | chr3:21792543-21792593 | NT2-D1 | testis: | n/a |
15 | chr3:21448012-21448062 | SK-N-SH_RA | brain: | n/a |
16 | chr3:21792938-21792988 | GM06990 | blood: | n/a |
17 | chr3:21792248-21792298 | SK-N-SH_RA | brain: | n/a |
18 | chr3:21446874-21446924 | HMEC | breast: | n/a |
19 | chr3:21792857-21792907 | GM12891 | blood: | n/a |
20 | chr3:21445979-21446029 | PrEC | prostate: | n/a |
21 | chr3:21792991-21793041 | Caco-2 | colon: | n/a |
22 | chr3:21792684-21792734 | CMK | blood: | n/a |
23 | chr3:21790232-21790282 | GM12878 | blood: | n/a |
24 | chr3:21792543-21792593 | IMR90 | lung: | fetal |
25 | chr3:21792684-21792734 | PANC-1 | pancreas: | n/a |
26 | chr3:21447501-21447551 | HepG2 | liver: | n/a |
27 | chr3:21720400-21720450 | Hepatocyte | liver: | n/a |
28 | chr3:21447391-21447441 | U87 | brain: | n/a |
29 | chr3:21792684-21792734 | HCM | heart: | n/a |
30 | chr3:21584249-21584299 | HRPEpiC | eye: | n/a |
31 | chr3:21447667-21447717 | HRCEpiC | kidney: | n/a |
32 | chr3:21426059-21426109 | SK-N-SH | brain: | n/a |
33 | chr3:21960904-21960954 | AG09319 | gingival: | n/a |
34 | chr3:21448012-21448062 | HCM | heart: | n/a |
35 | chr3:21792543-21792593 | SK-N-SH_RA | brain: | n/a |
36 | chr3:21792543-21792593 | HepG2 | liver: | n/a |
37 | chr3:21960904-21960954 | SK-N-SH_RA | brain: | n/a |
38 | chr3:21790232-21790282 | HPAEpiC | pulmonary alveolar: | n/a |
39 | chr3:21790232-21790282 | ECC-1 | luminal epithelium: | n/a |
40 | chr3:21558209-21558259 | NT2-D1 | testis: | n/a |
41 | chr3:21448049-21448099 | GM12891 | blood: | n/a |
42 | chr3:21706663-21706713 | NHBE | bronchial: | n/a |
43 | chr3:21793557-21793607 | GM19239 | blood: | n/a |
44 | chr3:21714788-21714838 | H1-hESC | embryonic stem cell: | embryo |
45 | chr3:21792543-21792593 | HCPEpiC | choroid plexus: | n/a |
46 | chr3:21761217-21761267 | HCM | heart: | n/a |
47 | chr3:21447501-21447551 | ProgFib | skin: | n/a |
48 | chr3:21447667-21447717 | AG10803 | skin: | n/a |
49 | chr3:21792991-21793041 | Jurkat | blood: | n/a |
50 | chr3:21792938-21792988 | HCM | heart: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:21434215..21436621-chr3:21438277..21440578,2 | MCF-7 | breast: | |
2 | chr3:21793963..21794585-chr3:21876272..21877179,2 | MCF-7 | breast: | |
3 | chr3:21948578..21950299-chr3:21951052..21953875,2 | MCF-7 | breast: | |
4 | chr3:21593555..21596291-chr3:21602038..21604298,2 | K562 | blood: | |
5 | chr3:21533469..21535837-chr3:21555368..21557096,2 | K562 | blood: | |
6 | chr3:21508162..21510011-chr3:21513396..21515534,2 | K562 | blood: | |
7 | chr3:21547308..21549346-chr3:21549742..21551685,2 | K562 | blood: | |
8 | chr3:20267223..20267887-chr3:21592292..21593221,2 | MCF-7 | breast: | |
9 | chr3:21721634..21724337-chr3:21728946..21730736,2 | K562 | blood: | |
10 | chr3:21942258..21944994-chr3:21945829..21948153,2 | K562 | blood: | |
11 | chr3:21874988..21876733-chr3:21878025..21880087,4 | K562 | blood: | |
12 | chr3:21820384..21822203-chr3:21834742..21836819,2 | K562 | blood: | |
13 | chr3:21892806..21894849-chr3:21897852..21900833,2 | K562 | blood: | |
14 | chr3:20378280..20380658-chr3:21571258..21574044,2 | K562 | blood: | |
15 | chr3:21700043..21701909-chr3:21703783..21705920,2 | K562 | blood: | |
16 | chr3:21622806..21624810-chr3:21626312..21628211,2 | K562 | blood: | |
17 | chr3:21439366..21441034-chr3:21442770..21445274,2 | K562 | blood: | |
18 | chr3:21793981..21794891-chr3:21935742..21936689,4 | MCF-7 | breast: | |
19 | chr3:21603848..21605723-chr3:21608841..21613038,5 | K562 | blood: | |
20 | chr3:21647916..21649691-chr3:21651335..21653463,2 | K562 | blood: | |
21 | chr3:19926567..19927530-chr3:21592329..21593167,2 | MCF-7 | breast: | |
22 | chr3:21388598..21390467-chr3:21391576..21393925,2 | K562 | blood: | |
23 | chr3:21434090..21435912-chr3:21501028..21503829,2 | K562 | blood: | |
24 | chr3:21927265..21931115-chr3:21931720..21934482,3 | K562 | blood: | |
25 | chr3:21604223..21605998-chr3:21608773..21611314,2 | K562 | blood: | |
26 | chr3:21565324..21568095-chr3:21579893..21581736,2 | K562 | blood: | |
27 | chr3:21547308..21549346-chr3:21549742..21551685,2 | K562 | blood: | |
28 | chr3:21942258..21944994-chr3:21945829..21948153,2 | K562 | blood: | |
29 | chr3:21827028..21830015-chr3:21877815..21880748,2 | K562 | blood: | |
30 | chr3:21622806..21624810-chr3:21626312..21628211,2 | K562 | blood: | |
31 | chr3:21565324..21568095-chr3:21579893..21581736,2 | K562 | blood: | |
32 | chr3:21551694..21553640-chr3:21557602..21559224,2 | K562 | blood: | |
33 | chr3:21593555..21596291-chr3:21602038..21604298,2 | K562 | blood: | |
34 | chr3:21508162..21510011-chr3:21513396..21515534,2 | K562 | blood: | |
35 | chr3:21793981..21794891-chr3:21935742..21936689,4 | MCF-7 | breast: | |
36 | chr3:21565741..21568055-chr3:21571417..21573750,2 | K562 | blood: | |
37 | chr3:21731209..21733494-chr3:21734239..21737036,2 | K562 | blood: | |
38 | chr3:21794398..21795153-chr3:22159350..22159975,2 | MCF-7 | breast: | |
39 | chr3:21386176..21388301-chr3:21404995..21407589,2 | K562 | blood: | |
40 | chr3:21829102..21831903-chr3:21833288..21835106,2 | MCF-7 | breast: | |
41 | chr3:21647916..21649691-chr3:21651335..21653463,2 | K562 | blood: | |
42 | chr3:21058395..21059158-chr3:21525879..21526450,3 | MCF-7 | breast: | |
43 | chr3:21919005..21921576-chr3:21924260..21925811,2 | K562 | blood: | |
44 | chr3:21386176..21388301-chr3:21404995..21407589,2 | K562 | blood: | |
45 | chr3:21834699..21836749-chr3:21841872..21843616,2 | K562 | blood: | |
46 | chr3:21567837..21569821-chr3:21573520..21576475,3 | K562 | blood: | |
47 | chr3:21534337..21537084-chr3:21554573..21557096,2 | K562 | blood: | |
48 | chr3:21835216..21837652-chr3:21840366..21842817,3 | K562 | blood: | |
49 | chr3:21927265..21931115-chr3:21931720..21934482,3 | K562 | blood: | |
50 | chr3:21902249..21903949-chr3:21904642..21906995,2 | K562 | blood: |
(count:15 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-SGOL1-3 | chr3:21603411-21603587 | NONHSAT088646 |
2 | lnc-UBE2E2-2 | chr3:21998628-21998684 | ENSG00000223351 |
3 | lnc-ZNF385D-1 | chr3:21453714-21455436 | ENSG00000272511.1 |
4 | lnc-KAT2B-4 | chr3:21620681-21620873 | ENSG00000225542.1 |
5 | lnc-KAT2B-4 | chr3:21584308-21584487 | ENSG00000225542.1 |
6 | lnc-UBE2E2-2 | chr3:21984058-21984156 | ENSG00000223351 |
7 | lnc-UBE2E2-2 | chr3:22000324-22000415 | ENSG00000223351 |
8 | lnc-UBE2E2-7 | chr3:21975327-21975419 | l_2330_chr3:21975326-21982219_testes |
9 | lnc-UBE2E2-7 | chr3:21982020-21982219 | l_2330_chr3:21975326-21982219_testes |
10 | lnc-SGOL1-3 | chr3:21606066-21606178 | NONHSAT088646 |
11 | lnc-UBE2E2-2 | chr3:22000324-22000415 | ENSG00000223351 |
12 | lnc-UBE2E2-2 | chr3:22002908-22003032 | ENSG00000223351 |
13 | lnc-SGOL1-3 | chr3:21919332-21919650 | NONHSAT088650 |
14 | lnc-KAT2B-4 | chr3:21621120-21621451 | ENSG00000225542.1 |
15 | lnc-UBE2E2-2 | chr3:21998631-21998684 | ENSG00000223351 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000221384 | TF binding region |
ZNF385D-AS2 | TF binding region |
VENTXP7 | TF binding region |
ZNF385D | TF binding region |
ZNF385D-AS1 | TF binding region |
ENSG00000252306 | TF binding region |
ENSG00000272511 | TF binding region |
ENSG00000221384 | CpG island |
ZNF385D-AS2 | CpG island |
VENTXP7 | CpG island |
ZNF385D | CpG island |
ZNF385D-AS1 | CpG island |
ENSG00000252306 | CpG island |
ENSG00000272511 | CpG island |
ENSG00000151789 | chromatin interactions |
ENSG00000272511 | chromatin interactions |
ENSG00000110074 | chromatin interactions |
ENSG00000225542 | chromatin interactions |
ENSG00000236380 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs189724096 | chr3:21397436-21397437 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs549166432 | chr3:21397481-21397482 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs181183148 | chr3:21397498-21397499 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs530944459 | chr3:21397553-21397554 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs552577636 | chr3:21397577-21397578 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs564598564 | chr3:21397651-21397652 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs369922787 | chr3:21397653-21397654 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs547315428 | chr3:21397655-21397656 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs552925389 | chr3:21397738-21397739 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs565863586 | chr3:21397742-21397743 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs13095327 | chr3:21397755-21397756 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
12 | rs548085441 | chr3:21397791-21397792 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs186159423 | chr3:21397862-21397863 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
14 | rs538083949 | chr3:21397873-21397874 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
15 | rs551691546 | chr3:21397894-21397895 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
16 | rs376997409 | chr3:21397900-21397901 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
17 | rs576573480 | chr3:21397916-21397917 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
18 | rs534716292 | chr3:21397944-21397945 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
19 | rs145512020 | chr3:21397972-21397973 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
20 | rs116451180 | chr3:21397985-21397986 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
21 | rs542024420 | chr3:21397991-21397992 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
22 | rs563995289 | chr3:21398011-21398012 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs33998065 | chr3:21398020-21398021 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs575984961 | chr3:21398104-21398105 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs188913663 | chr3:21398105-21398106 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs181932186 | chr3:21398139-21398140 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs528625122 | chr3:21398155-21398156 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs201107189 | chr3:21398173-21398174 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs540720874 | chr3:21398174-21398175 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs561997818 | chr3:21398183-21398184 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs529913914 | chr3:21398190-21398191 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs547952682 | chr3:21398232-21398233 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
33 | rs569650700 | chr3:21398267-21398268 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
34 | rs530707782 | chr3:21398276-21398277 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
35 | rs151091032 | chr3:21398298-21398299 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
36 | rs570433694 | chr3:21398309-21398310 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
37 | rs534282570 | chr3:21398350-21398351 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
38 | rs553048982 | chr3:21398497-21398498 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs186596771 | chr3:21398519-21398520 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs116136299 | chr3:21398569-21398570 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs375823559 | chr3:21398585-21398586 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs372651650 | chr3:21398703-21398704 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs75094266 | chr3:21398711-21398712 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs369923707 | chr3:21398745-21398746 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs576046337 | chr3:21398834-21398835 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs546515566 | chr3:21398882-21398883 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs985976 | chr3:21398894-21398895 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
48 | rs573197146 | chr3:21398896-21398897 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs540225691 | chr3:21398903-21398904 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs562231184 | chr3:21398919-21398920 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 21979893 | CNVD |
Esophageal squamous carcinoma | 18405350 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 17603634 | CNVD |
Neuroblastoma | 17327916 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Colorectal cancer | 21297112 | CNVD |
Lynch syndrome | 18415027 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Melanoma | 18172304 | CNVD |
Cervical cancer | 21062161 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Insulin resistance | 16721378 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Oral cancer | 19627613 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Epithelial cancer | 22065749 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Liposarcoma | 21253554 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Pancreatic endocrine tumor | 20981439 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Oral cancer | 21386901 | CNVD |
Cutaneous squamous cell carcinomas | 19131950 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Retinoblastoma | 21504564 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Lung cancer | 20668451 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Intellectual disability | 22102821 | CNVD |
Esophageal cancer | 20955586 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Gastric adenocarcinoma | 19115996 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Esophageal squamous carcinoma | 17470683 | CNVD |
Breast cancer | 17133270 | CNVD |
Developmental delay | 21147756 | CNVD |
Uveal melanoma | 20484589 | CNVD |
Autism | 22495311 | CNVD |
Cancer | 20164919 | CNVD |
Melanoma | 20688739 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:21397400-21397600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
2 | chr3:21397400-21397800 | Enhancers | NHDF-Ad | bronchial |
3 | chr3:21397600-21398400 | Enhancers | Muscle Satellite Cultured Cells | -- |
4 | chr3:21397600-21398400 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
5 | chr3:21397600-21398600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
6 | chr3:21397800-21398000 | Flanking Active TSS | NHDF-Ad | bronchial |
7 | chr3:21398000-21398200 | Enhancers | NHDF-Ad | bronchial |
8 | chr3:21398200-21398400 | Flanking Active TSS | NHDF-Ad | bronchial |
9 | chr3:21398400-21399000 | Enhancers | NHDF-Ad | bronchial |
10 | chr3:21398600-21399400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
11 | chr3:21398800-21399200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
12 | chr3:21398800-21399200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
13 | chr3:21413400-21413800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
14 | chr3:21413800-21414200 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
15 | chr3:21413800-21414400 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
16 | chr3:21413800-21414600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
17 | chr3:21414000-21414600 | Enhancers | HUES6 Cell Line | embryonic stem cell |
18 | chr3:21414200-21414400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
19 | chr3:21414400-21414600 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
20 | chr3:21414600-21414800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
21 | chr3:21414600-21418200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
22 | chr3:21414800-21418000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
23 | chr3:21418000-21419200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
24 | chr3:21418200-21418800 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
25 | chr3:21418600-21420000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
26 | chr3:21418800-21420200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
27 | chr3:21420200-21420400 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
28 | chr3:21424000-21424200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
29 | chr3:21424200-21432800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
30 | chr3:21425400-21426400 | Enhancers | HUES48 Cell Line | embryonic stem cell |
31 | chr3:21426200-21426800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
32 | chr3:21426800-21427800 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
33 | chr3:21428800-21429200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
34 | chr3:21429200-21431800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
35 | chr3:21430400-21431800 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
36 | chr3:21431000-21431600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
37 | chr3:21431200-21432000 | Enhancers | Rectal Smooth Muscle | rectum |
38 | chr3:21431200-21432200 | Enhancers | Muscle Satellite Cultured Cells | -- |
39 | chr3:21431200-21432200 | Enhancers | NHDF-Ad | bronchial |
40 | chr3:21431200-21432800 | Enhancers | NH-A | brain |
41 | chr3:21431200-21435400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
42 | chr3:21431600-21432000 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
43 | chr3:21431800-21432000 | Enhancers | Aorta | Aorta |
44 | chr3:21431800-21432200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
45 | chr3:21431800-21432600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
46 | chr3:21431800-21433600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
47 | chr3:21432000-21435200 | Weak transcription | Aorta | Aorta |
48 | chr3:21432200-21433800 | Weak transcription | NHDF-Ad | bronchial |
49 | chr3:21432200-21435400 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
50 | chr3:21432800-21433000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |