Variant report

Variant	nsv5341
Chromosome Location	chr6:71925073-71956936
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71953923..71956833-chr6:71966030..71968468,2	MCF-7	breast:
2	chr6:71955241..71957809-chr6:71959379..71962225,3	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:71931160-71931257	ENSG00000232295.3
2	lnc-B3GAT2-3	chr6:71932349-71932418	ENSG00000232295.3
3	lnc-OGFRL1-10	chr6:71928068-71928651	l_3203_chr6:71873226-71928651_brain
4	lnc-B3GAT2-3	chr6:71939529-71939630	ENSG00000232295.3
5	lnc-B3GAT2-3	chr6:71943216-71943360	ENSG00000232295.3
6	lnc-B3GAT2-1	chr6:71943216-71943366	XLOC_005760

No data

Extended variants
information (count: 1006 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1006 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546927997	chr6:71928093-71928094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs547750366	chr6:71928111-71928112	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs571520804	chr6:71928214-71928215	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs532446482	chr6:71928215-71928216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs77349139	chr6:71928227-71928228	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs551035867	chr6:71928255-71928256	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs569210750	chr6:71928275-71928276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs536367560	chr6:71928289-71928290	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs530442406	chr6:71928336-71928337	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs555012875	chr6:71928369-71928370	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs532879596	chr6:71928370-71928371	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs181938058	chr6:71928382-71928383	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs534076865	chr6:71928391-71928392	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs555864416	chr6:71928398-71928399	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs372267982	chr6:71928399-71928400	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs558719799	chr6:71928461-71928462	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs577157011	chr6:71928462-71928463	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs186049012	chr6:71928491-71928492	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs546322918	chr6:71928533-71928534	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs376507756	chr6:71928565-71928566	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs556712602	chr6:71928613-71928614	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs566108931	chr6:71928633-71928634	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs192332821	chr6:71931166-71931167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs12203753	chr6:71931184-71931185	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs558583694	chr6:71931204-71931205	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs570599276	chr6:71931212-71931213	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs183429092	chr6:71931213-71931214	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs556349592	chr6:71931214-71931215	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs118039405	chr6:71931224-71931225	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs542125311	chr6:71931227-71931228	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs563708408	chr6:71931241-71931242	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs553611761	chr6:71931259-71931260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs187360383	chr6:71931275-71931276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138892424	chr6:71931289-71931290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564130981	chr6:71931292-71931293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs564579308	chr6:71931304-71931305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531867680	chr6:71931309-71931310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs543531165	chr6:71931316-71931317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs562330023	chr6:71931324-71931325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529425538	chr6:71931342-71931343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369910460	chr6:71931355-71931356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115506312	chr6:71931371-71931372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374229978	chr6:71931372-71931373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs531952090	chr6:71931374-71931375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566422090	chr6:71931450-71931451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs192216229	chr6:71931475-71931476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs377636244	chr6:71931481-71931482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs78132900	chr6:71931490-71931491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570438350	chr6:71931508-71931509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs369507649	chr6:71931534-71931535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:148 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71931200-71939400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:71932400-71932800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:71932400-71933200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:71932800-71935800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:71933200-71933600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:71933600-71933800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:71933800-71936800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:71935800-71937800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:71936600-71939600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:71936800-71937400	Enhancers	Fetal Thymus	thymus
11	chr6:71936800-71938400	Enhancers	Primary T cells from cord blood	blood
12	chr6:71936800-71938800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:71936800-71939200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:71936800-71939600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:71937000-71937600	Enhancers	Hela-S3	cervix
16	chr6:71937200-71937400	Enhancers	Primary B cells from cord blood	blood
17	chr6:71937200-71937400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:71937200-71937600	Enhancers	HSMMtube	muscle
19	chr6:71937200-71938800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:71937200-71939000	Enhancers	HSMM	muscle
21	chr6:71937200-71940000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:71937200-71940200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:71937200-71940200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:71937400-71938400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:71937400-71938800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:71937400-71939000	Enhancers	HUVEC	blood vessel
27	chr6:71937400-71939800	Weak transcription	Fetal Thymus	thymus
28	chr6:71937400-71940200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:71937400-71946600	Weak transcription	Primary B cells from cord blood	blood
30	chr6:71937600-71938000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:71937600-71938000	Weak transcription	Hela-S3	cervix
32	chr6:71937600-71938600	Enhancers	Primary B cells from peripheral blood	blood
33	chr6:71937600-71938800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:71937800-71939200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:71937800-71939800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:71937800-71940200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:71938000-71938400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:71938000-71938400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:71938000-71938800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:71938000-71938800	Enhancers	Hela-S3	cervix
41	chr6:71938200-71938600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr6:71938200-71938600	Enhancers	NH-A	brain
43	chr6:71938200-71938600	Enhancers	NHEK	skin
44	chr6:71938400-71938600	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr6:71938400-71939000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:71938400-71939000	Enhancers	A549	lung
47	chr6:71938400-71939000	Enhancers	HMEC	breast
48	chr6:71938400-71939600	Enhancers	Osteobl	bone
49	chr6:71938400-71940000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr6:71938400-71940000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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