Variant report

Variant	nsv534124
Chromosome Location	chr19:52368797-52616696
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4314)
CpG islands
(count:7205)
Chromatin interactive
region (count:174)
LncRNA
region (count:78)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4314 , 50 per page) page: 1 2 3 4 5 6 7 ... 87

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52552024-52552805	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:52407793-52408814	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:52408187-52408572	K562	blood:	n/a	n/a
4	ARID3A	chr19:52489958-52490423	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:52531625-52531875	K562	blood:	n/a	n/a
6	ARID3A	chr19:52531399-52531960	HepG2	liver:	n/a	n/a
7	ARID3A	chr19:52598763-52599031	HepG2	liver:	n/a	n/a
8	ARID3A	chr19:52555017-52555116	HepG2	liver:	n/a	n/a
9	ARID3A	chr19:52407414-52407541	HepG2	liver:	n/a	n/a
10	ARID3A	chr19:52511381-52511632	HepG2	liver:	n/a	n/a
11	ARID3A	chr19:52551838-52552062	K562	blood:	n/a	n/a
12	ARID3A	chr19:52603068-52603334	HepG2	liver:	n/a	n/a
13	ATF1	chr19:52430091-52430806	K562	blood:	n/a	n/a
14	ATF1	chr19:52551777-52552810	K562	blood:	n/a	n/a
15	ATF1	chr19:52480697-52480890	K562	blood:	n/a	n/a
16	ATF1	chr19:52531294-52532287	K562	blood:	n/a	n/a
17	ATF1	chr19:52594171-52594249	K562	blood:	n/a	n/a
18	ATF1	chr19:52463795-52464169	K562	blood:	n/a	n/a
19	ATF2	chr19:52531260-52531946	GM12878	blood:	n/a	n/a
20	ATF2	chr19:52531375-52531869	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr19:52390849-52391604	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr19:52394261-52394851	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr19:52430232-52430844	GM12878	blood:	n/a	n/a
24	ATF2	chr19:52531615-52532011	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr19:52531446-52531834	GM12878	blood:	n/a	n/a
26	ATF2	chr19:52430166-52430836	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr19:52390724-52391648	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr19:52489925-52490372	GM12878	blood:	n/a	n/a
29	ATF2	chr19:52489820-52490382	GM12878	blood:	n/a	n/a
30	ATF2	chr19:52551876-52552336	GM12878	blood:	n/a	n/a
31	ATF2	chr19:52430063-52430883	GM12878	blood:	n/a	n/a
32	ATF2	chr19:52429861-52430848	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF2	chr19:52394264-52394760	H1-hESC	embryonic stem cell:	n/a	n/a
34	ATF3	chr19:52551971-52552264	K562	blood:	n/a	n/a
35	ATF3	chr19:52391005-52391486	H1-hESC	embryonic stem cell:	n/a	n/a
36	ATF3	chr19:52531445-52531886	H1-hESC	embryonic stem cell:	n/a	n/a
37	ATF3	chr19:52489920-52490284	GM12878	blood:	n/a	chr19:52490196-52490205
38	ATF3	chr19:52531485-52531866	HepG2	liver:	n/a	n/a
39	ATF3	chr19:52531412-52531886	GM12878	blood:	n/a	n/a
40	ATF3	chr19:52390958-52391557	H1-hESC	embryonic stem cell:	n/a	n/a
41	ATF3	chr19:52531484-52531864	K562	blood:	n/a	n/a
42	ATF3	chr19:52531627-52531731	GM12878	blood:	n/a	n/a
43	ATF3	chr19:52489934-52490365	A549	lung:	n/a	chr19:52490196-52490205
44	ATF3	chr19:52531413-52531942	HepG2	liver:	n/a	n/a
45	ATF3	chr19:52531345-52531922	H1-hESC	embryonic stem cell:	n/a	n/a
46	ATF3	chr19:52603087-52603281	HepG2	liver:	n/a	n/a
47	ATF3	chr19:52531448-52531873	K562	blood:	n/a	n/a
48	ATF3	chr19:52489548-52490328	A549	lung:	n/a	chr19:52490196-52490205
49	BACH1	chr19:52551854-52552365	H1-hESC	embryonic stem cell:	n/a	n/a
50	BACH1	chr19:52531354-52531915	H1-hESC	embryonic stem cell:	n/a	n/a

(count:7205 , 50 per page) page: 1 2 3 4 5 6 7 ... 145

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52391304-52391354	HMEC	breast:	n/a
2	chr19:52408259-52408309	GM12878	blood:	n/a
3	chr19:52408348-52408398	HPAEpiC	pulmonary alveolar:	n/a
4	chr19:52391304-52391354	HRE	kidney:	n/a
5	chr19:52430492-52430542	MCF10A-Er-Src	breast:	n/a
6	chr19:52598653-52598703	PrEC	prostate:	n/a
7	chr19:52391257-52391307	HNPCEpiC	eye:	n/a
8	chr19:52391304-52391354	HMEC	breast:	n/a
9	chr19:52408259-52408309	GM12878	blood:	n/a
10	chr19:52408348-52408398	HPAEpiC	pulmonary alveolar:	n/a
11	chr19:52391304-52391354	HRE	kidney:	n/a
12	chr19:52430492-52430542	MCF10A-Er-Src	breast:	n/a
13	chr19:52598653-52598703	PrEC	prostate:	n/a
14	chr19:52391257-52391307	HNPCEpiC	eye:	n/a
15	chr19:52531800-52531850	GM06990	blood:	n/a
16	chr19:52531438-52531488	NB4	blood:	n/a
17	chr19:52490310-52490360	SK-N-SH	brain:	n/a
18	chr19:52429980-52430030	AG09309	skin:	n/a
19	chr19:52408348-52408398	IMR90	lung:	fetal
20	chr19:52430492-52430542	SK-N-MC	brain:	n/a
21	chr19:52552206-52552256	CMK	blood:	n/a
22	chr19:52490199-52490249	PFSK-1	brain:	n/a
23	chr19:52602607-52602657	HEEpiC	esophagus:	n/a
24	chr19:52391090-52391140	AG09319	gingival:	n/a
25	chr19:52430771-52430821	BE2_C	brain:	n/a
26	chr19:52408350-52408400	PrEC	prostate:	n/a
27	chr19:52490069-52490119	HCF	heart:	n/a
28	chr19:52391166-52391216	PFSK-1	brain:	n/a
29	chr19:52430533-52430583	K562	blood:	n/a
30	chr19:52490339-52490389	Hepatocyte	liver:	n/a
31	chr19:52552461-52552511	BJ	skin:	n/a
32	chr19:52552197-52552247	HIPEpiC	eye:	n/a
33	chr19:52490069-52490119	NH-A	brain:	n/a
34	chr19:52499841-52499891	AG09309	skin:	n/a
35	chr19:52499841-52499891	Hela-S3	cervix:	n/a
36	chr19:52408348-52408398	AG04450	lung:	fetal
37	chr19:52511900-52511950	BE2_C	brain:	n/a
38	chr19:52448902-52448952	HNPCEpiC	eye:	n/a
39	chr19:52408322-52408372	SKMC	muscle:	n/a
40	chr19:52511591-52511641	HL-60	blood:	n/a
41	chr19:52598999-52599049	ECC-1	luminal epithelium:	n/a
42	chr19:52430190-52430240	MCF10A-Er-Src	breast:	n/a
43	chr19:52490069-52490119	HMEC	breast:	n/a
44	chr19:52452808-52452858	T-47D	breast:	n/a
45	chr19:52393606-52393656	ovcar-3	ovarian:	n/a
46	chr19:52529860-52529910	ECC-1	luminal epithelium:	n/a
47	chr19:52490173-52490223	HAEpiC	amniotic membrane:	n/a
48	chr19:52495464-52495514	HAEpiC	amniotic membrane:	n/a
49	chr19:52489831-52489881	BJ	skin:	n/a
50	chr19:52511502-52511552	PANC-1	pancreas:	n/a

(count:174 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr19:52416986..52419032-chr19:52645403..52646952,2	K562	blood:
2	chr19:52388375..52390016-chr19:52406809..52409493,2	K562	blood:
3	chr19:52551934..52553861-chr19:52580531..52583502,3	K562	blood:
4	chr19:52551561..52553801-chr19:52643165..52644706,2	K562	blood:
5	chr19:52495447..52499053-chr19:52500627..52503921,5	K562	blood:
6	chr17:41380450..41382248-chr19:52468159..52469659,3	K562	blood:
7	chr19:52575600..52577356-chr19:52580817..52583793,2	K562	blood:
8	chr19:52589109..52592650-chr19:52594968..52600030,5	K562	blood:
9	chr19:52495447..52499053-chr19:52500627..52503921,5	K562	blood:
10	chr19:52406727..52408388-chr19:52428844..52430674,2	K562	blood:
11	chr19:52499367..52502789-chr19:52503476..52507276,3	K562	blood:
12	chr19:52543896..52546052-chr19:52546665..52549791,3	K562	blood:
13	chr19:52597459..52600188-chr19:52771516..52774031,2	MCF-7	breast:
14	chr19:52357534..52360179-chr19:52587172..52589645,2	K562	blood:
15	chr19:52520400..52521980-chr19:52530042..52533110,3	MCF-7	breast:
16	chr19:52463061..52465031-chr19:52467660..52469161,2	K562	blood:
17	chr19:52489566..52491908-chr19:52529966..52531753,2	MCF-7	breast:
18	chr19:52522708..52525154-chr19:52535307..52537297,2	MCF-7	breast:
19	chr19:52501372..52503764-chr19:52531365..52534174,2	K562	blood:
20	chr19:52383956..52386639-chr19:52386730..52388242,2	K562	blood:
21	chr19:52505792..52508721-chr19:52508745..52510536,2	K562	blood:
22	chr19:52543896..52546052-chr19:52546665..52549791,3	K562	blood:
23	chr19:52594754..52596918-chr19:52597024..52599025,2	MCF-7	breast:
24	chr19:52504954..52508127-chr19:52509036..52512769,6	K562	blood:
25	chr19:52587609..52589157-chr19:52597921..52600004,2	MCF-7	breast:
26	chr19:52527946..52533480-chr19:52550519..52554398,10	K562	blood:
27	chr19:52396552..52399514-chr19:52486144..52488368,2	K562	blood:
28	chr15:54268702..54269329-chr19:52546893..52547395,2	MCF-7	breast:
29	chr19:52550932..52553795-chr19:52571566..52574239,2	K562	blood:
30	chr19:52551202..52553746-chr19:52596231..52599092,3	K562	blood:
31	chr19:52399759..52403972-chr19:52406809..52409528,3	K562	blood:
32	chr19:52429274..52431583-chr19:52530838..52533041,2	MCF-7	breast:
33	chr19:52421901..52424826-chr19:52448937..52450771,2	K562	blood:
34	chr19:52528365..52531189-chr19:52598052..52600435,2	K562	blood:
35	chr19:52551072..52553339-chr19:52588473..52591690,3	K562	blood:
36	chr19:52049354..52051242-chr19:52535429..52537065,2	K562	blood:
37	chr19:52527946..52533480-chr19:52550519..52554398,10	K562	blood:
38	chr19:52484947..52487239-chr19:52487378..52490220,3	K562	blood:
39	chr17:41464206..41466137-chr19:52468139..52469658,2	MCF-7	breast:
40	chr19:52397856..52399876-chr19:52550582..52552472,2	K562	blood:
41	chr19:52399727..52401521-chr19:52425509..52427122,2	K562	blood:
42	chr19:52406727..52408388-chr19:52428844..52430674,2	K562	blood:
43	chr19:52407918..52408595-chr19:52430246..52431038,2	NB4	blood:
44	chr19:52530218..52533559-chr19:52550553..52554398,9	K562	blood:
45	chr19:52522708..52525154-chr19:52535307..52537297,2	MCF-7	breast:
46	chr19:52505792..52508721-chr19:52508745..52510536,2	K562	blood:
47	chr19:52395803..52397740-chr19:52406948..52409418,2	K562	blood:
48	chr19:52397025..52399496-chr19:52401258..52403810,3	K562	blood:
49	chr19:52598726..52600984-chr19:52691577..52693709,2	MCF-7	breast:
50	chr19:52510971..52512986-chr19:52517151..52519780,2	K562	blood:

(count:78 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF649-3	chr19:52383932-52384130	NR_024181
2	lnc-ZNF613-1	chr19:52474396-52474419	NONHSAT067501
3	lnc-ZNF613-1	chr19:52452415-52452488	ENSG00000269235.1
4	lnc-ZNF649-3	chr19:52383576-52383654	NR_024181
5	lnc-ZNF613-1	chr19:52452387-52452488	ENSG00000269235.1
6	lnc-ZNF613-3	chr19:52439281-52439378	NONHSAT067495
7	lnc-ZNF432-1	chr19:52570752-52570863	NONHSAT067513
8	lnc-ZNF613-1	chr19:52479226-52479321	NONHSAT067499
9	lnc-ZNF613-3	chr19:52432985-52433077	NONHSAT067495
10	lnc-ZNF613-4	chr19:52403376-52403716	ENSG00000268095.1
11	lnc-ZNF841-1	chr19:52566900-52566956	ENSG00000260160.1
12	lnc-ZNF613-1	chr19:52452415-52452488	NONHSAT067499
13	lnc-ZNF615-1	chr19:52490023-52490058	NONHSAT067502
14	lnc-ZNF613-1	chr19:52479644-52479826	ENSG00000269235.1
15	lnc-ZNF613-1	chr19:52479644-52479826	NONHSAT067501
16	lnc-ZNF841-1	chr19:52561743-52562360	ENSG00000260160.1
17	lnc-ZNF614-1	chr19:52507670-52507976	NONHSAT067506
18	lnc-ZNF614-1	chr19:52511394-52511454	NONHSAT067507
19	lnc-ZNF613-1	chr19:52452558-52452605	NONHSAT067500
20	lnc-ZNF841-2	chr19:52552063-52552760	NONHSAT067511
21	lnc-ZNF613-1	chr19:52479384-52479596	NONHSAT067499
22	lnc-ZNF649-3	chr19:52390074-52390165	NONHSAT067491
23	lnc-ZNF649-3	chr19:52383951-52384130	NONHSAT067490
24	lnc-ZNF649-2	chr19:52425261-52425529	expReg_chr19_7235_-
25	lnc-ZNF613-1	chr19:52479644-52479826	NR_103847
26	lnc-ZNF614-1	chr19:52510546-52510583	NONHSAT067506
27	lnc-ZNF649-1	chr19:52424420-52424951	expReg_chr19_7234_-
28	lnc-ZNF613-1	chr19:52479414-52479826	NONHSAT067503
29	lnc-ZNF841-1	chr19:52566900-52566956	ENSG00000249246
30	lnc-ZNF841-2	chr19:52598828-52598991	NONHSAT067511
31	lnc-ZNF613-4	chr19:52399414-52399549	ENSG00000268095.1
32	lnc-ZNF649-3	chr19:52381642-52381768	NR_024181
33	lnc-ZNF615-1	chr19:52476220-52477784	NONHSAT067502
34	lnc-ZNF613-1	chr19:52484180-52484613	ENSG00000246125
35	lnc-ZNF614-1	chr19:52507035-52507153	NONHSAT067506
36	lnc-ZNF613-2	chr19:52567872-52568844	ENSG00000245697
37	lnc-ZNF649-3	chr19:52390841-52391144	NONHSAT067491
38	lnc-ZNF649-3	chr19:52374881-52375100	NONHSAT067486
39	lnc-ZNF613-7	chr19:52550187-52550516	NONHSAT067510
40	lnc-ZNF613-1	chr19:52484180-52484615	NONHSAT067500
41	lnc-ZNF613-1	chr19:52479644-52479826	ENSG00000246125
42	lnc-ZNF613-1	chr19:52452415-52452488	ENSG00000246125
43	lnc-ZNF613-1	chr19:52484180-52484603	NONHSAT067501
44	lnc-ZNF613-1	chr19:52484180-52484620	ENSG00000269235.1
45	lnc-ZNF613-6	chr19:52518894-52519892	NONHSAT067509
46	lnc-ZNF616-1	chr19:52613571-52613979	NONHSAT067514
47	lnc-ZNF613-1	chr19:52479644-52479826	NONHSAT067500
48	lnc-ZNF649-3	chr19:52391085-52391189	NONHSAT067485
49	lnc-ZNF613-6	chr19:52537716-52537830	NONHSAT067509
50	lnc-ZNF613-7	chr19:52551253-52553075	NONHSAT067510

No data

Variant related genes	Relation type
ZNF649	TF binding region
ZNF841	TF binding region
ZNF614	TF binding region
ZNF577	TF binding region
HCCAT3	TF binding region
ENSG00000260160	TF binding region
ZNF613	TF binding region
ZNF350	TF binding region
ZNF615	TF binding region
ENSG00000270248	TF binding region
ENSG00000268095	TF binding region
ZNF432	TF binding region
ZNF649	CpG island
ZNF841	CpG island
ZNF614	CpG island
ZNF577	CpG island
HCCAT3	CpG island
ENSG00000260160	CpG island
ZNF613	CpG island
ZNF350	CpG island
ZNF615	CpG island
ENSG00000270248	CpG island
ENSG00000268095	CpG island
ZNF432	CpG island
ENSG00000197608	chromatin interactions
ENSG00000269235	chromatin interactions
ENSG00000198093	chromatin interactions
ENSG00000243680	chromatin interactions
ENSG00000204611	chromatin interactions
ENSG00000176024	chromatin interactions
ENSG00000236383	chromatin interactions
ENSG00000259669	chromatin interactions
ENSG00000197619	chromatin interactions
ENSG00000202408	chromatin interactions
ENSG00000122958	chromatin interactions
ENSG00000196214	chromatin interactions
ENSG00000256683	chromatin interactions
ENSG00000268095	chromatin interactions
ENSG00000187474	chromatin interactions
ENSG00000104343	chromatin interactions
ENSG00000105568	chromatin interactions
ENSG00000142556	chromatin interactions
ENSG00000268458	chromatin interactions
ENSG00000256087	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000161551	chromatin interactions
NCBP2	miRNA target sites
TWF1	miRNA target sites
PIGT	miRNA target sites
IGSF1	miRNA target sites
EIF2AK1	miRNA target sites
SUSD1	miRNA target sites
OSBPL11	miRNA target sites
MRPL10	miRNA target sites

Extended variants
information (count: 9826 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:9826 , 50 per page) page: 1 2 3 4 5 6 7 ... 197

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78317124	chr19:52368835-52368836	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs545756216	chr19:52368844-52368845	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs564123231	chr19:52368849-52368850	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs576156175	chr19:52368864-52368865	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs141218151	chr19:52368879-52368880	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs562344326	chr19:52368989-52368990	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs529425409	chr19:52369006-52369007	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs8111316	chr19:52369069-52369070	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs559769867	chr19:52369078-52369079	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs181841349	chr19:52369080-52369081	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs551432877	chr19:52369097-52369098	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs28432250	chr19:52369098-52369099	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs139060997	chr19:52369122-52369123	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs149459726	chr19:52369140-52369141	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs112431645	chr19:52369172-52369173	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs62107506	chr19:52369197-52369198	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs140626011	chr19:52369240-52369241	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs548257413	chr19:52369241-52369242	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs560186867	chr19:52369255-52369256	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs577548724	chr19:52369263-52369264	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs538522526	chr19:52369290-52369291	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs557776105	chr19:52369293-52369294	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs576016463	chr19:52369300-52369301	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs185893211	chr19:52369345-52369346	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs369388102	chr19:52369346-52369347	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs373159909	chr19:52369371-52369372	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs77138668	chr19:52369379-52369380	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs574196502	chr19:52369432-52369433	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs190310146	chr19:52369444-52369445	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs375233194	chr19:52369450-52369451	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs559973131	chr19:52369482-52369483	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs374970376	chr19:52369502-52369503	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs369613575	chr19:52369508-52369509	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs144500343	chr19:52369517-52369518	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs563314881	chr19:52369537-52369538	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs372551741	chr19:52369545-52369546	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs549067720	chr19:52369562-52369563	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs182597900	chr19:52369631-52369632	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs552036494	chr19:52369647-52369648	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs528173596	chr19:52369664-52369665	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs570669554	chr19:52369751-52369752	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs187841403	chr19:52369763-52369764	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs56348791	chr19:52369790-52369791	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs191356681	chr19:52369814-52369815	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs374539099	chr19:52369884-52369885	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs147831831	chr19:52369951-52369952	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs182681158	chr19:52369972-52369973	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs187851601	chr19:52369978-52369979	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs192550666	chr19:52370011-52370012	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs370366523	chr19:52370017-52370018	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21785460	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Lung adenocarcinoma	21935476	CNVD
Autism	20531469	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:8884 , 50 per page) page: 1 2 3 4 5 6 7 ... 178

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52348800-52406800	ZNF genes & repeats	Liver	Liver
2	chr19:52356200-52384600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:52357800-52407400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:52358000-52384200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr19:52358200-52384800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:52358200-52407400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr19:52358400-52372000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr19:52358600-52384400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr19:52358800-52385000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr19:52361200-52369200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr19:52361200-52382000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr19:52362000-52369000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr19:52363200-52386200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr19:52363400-52368800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr19:52363600-52369000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr19:52363600-52369200	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr19:52363600-52369400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
18	chr19:52363600-52370000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr19:52364800-52369000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
20	chr19:52364800-52382000	ZNF genes & repeats	Dnd41	blood
21	chr19:52365200-52369400	ZNF genes & repeats	Fetal Lung	lung
22	chr19:52365200-52370400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr19:52365200-52382000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
24	chr19:52365400-52369200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr19:52365400-52369600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:52365400-52372000	ZNF genes & repeats	Ovary	ovary
27	chr19:52365600-52369000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr19:52366200-52368800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr19:52366600-52369400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr19:52366800-52406600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:52367000-52369000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:52367000-52369200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr19:52367000-52371200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr19:52367600-52368800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr19:52367800-52369400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:52368000-52369000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr19:52368000-52370200	ZNF genes & repeats	Aorta	Aorta
38	chr19:52368400-52368800	ZNF genes & repeats	Brain Germinal Matrix	brain
39	chr19:52368400-52370600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
40	chr19:52368600-52369000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr19:52368600-52369000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr19:52368800-52371400	Weak transcription	Brain Germinal Matrix	brain
43	chr19:52368800-52374400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr19:52369400-52369600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr19:52369400-52371400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr19:52369600-52369800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr19:52369600-52369800	ZNF genes & repeats	Fetal Lung	lung
48	chr19:52369600-52371000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr19:52369800-52371400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr19:52370200-52371800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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