Variant report
Variant | nsv534503 |
---|---|
Chromosome Location | chr13:66287963-67126195 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3244)
- CpG islands (count:733)
- Chromatin interactive region (count:49)
- LncRNA region (count:24)
- Mature miRNA region (count: 3)
- miRNA target sites (count:3)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr13:66713473-66713809 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr13:66643768-66644097 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr13:66784968-66784973 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr13:67024589-67024601 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr13:66886857-66887028 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr13:66651230-66651680 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr13:66650602-66650906 | K562 | blood: | n/a | n/a |
8 | ARID3A | chr13:66648258-66648447 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr13:66990708-66990955 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr13:66648256-66648525 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr13:66643737-66644023 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr13:66999986-67000196 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr13:66650593-66650896 | K562 | blood: | n/a | n/a |
14 | ATF2 | chr13:66798630-66799137 | H1-hESC | embryonic stem cell: | n/a | n/a |
15 | ATF2 | chr13:66712423-66712799 | GM12878 | blood: | n/a | n/a |
16 | ATF3 | chr13:66886740-66887227 | A549 | lung: | n/a | n/a |
17 | BACH1 | chr13:67078100-67078397 | H1-hESC | embryonic stem cell: | n/a | chr13:67078231-67078245 |
18 | BATF | chr13:67081195-67081436 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr13:66702801-66703238 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr13:66712420-66712936 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr13:66712465-66712951 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr13:67052441-67052616 | GM12878 | blood: | n/a | n/a |
23 | BCL11A | chr13:66702751-66703109 | GM12878 | blood: | n/a | n/a |
24 | BCL11A | chr13:66702875-66703088 | GM12878 | blood: | n/a | n/a |
25 | BCL11A | chr13:66798756-66799093 | H1-hESC | embryonic stem cell: | n/a | n/a |
26 | BCL11A | chr13:66712457-66712949 | GM12878 | blood: | n/a | chr13:66712844-66712853 |
27 | BCL11A | chr13:66712423-66713013 | GM12878 | blood: | n/a | chr13:66712844-66712853 |
28 | BCL11A | chr13:66798709-66799125 | H1-hESC | embryonic stem cell: | n/a | n/a |
29 | BCL3 | chr13:66886752-66887345 | A549 | lung: | n/a | n/a |
30 | BCL3 | chr13:66886608-66887994 | A549 | lung: | n/a | n/a |
31 | BCLAF1 | chr13:66712465-66712857 | GM12878 | blood: | n/a | chr13:66712844-66712853 |
32 | BHLHE40 | chr13:66739043-66739104 | K562 | blood: | n/a | n/a |
33 | BHLHE40 | chr13:66902776-66902779 | K562 | blood: | n/a | n/a |
34 | BHLHE40 | chr13:66712457-66712998 | GM12878 | blood: | n/a | n/a |
35 | BHLHE40 | chr13:66648396-66648557 | K562 | blood: | n/a | n/a |
36 | BHLHE40 | chr13:66917482-66917943 | K562 | blood: | n/a | n/a |
37 | BRCA1 | chr13:66712793-66712993 | GM12878 | blood: | n/a | n/a |
38 | BRCA1 | chr13:66878245-66878246 | Hela-S3 | cervix: | n/a | n/a |
39 | BRCA1 | chr13:67088395-67088424 | H1-hESC | embryonic stem cell: | n/a | n/a |
40 | CBX3 | chr13:66861033-66861253 | K562 | blood: | n/a | n/a |
41 | CBX3 | chr13:66643667-66644035 | K562 | blood: | n/a | n/a |
42 | CBX3 | chr13:66784784-66785224 | HCT-116 | colon: | n/a | n/a |
43 | CBX3 | chr13:66784811-66785347 | HCT-116 | colon: | n/a | n/a |
44 | CCNT2 | chr13:66589547-66589747 | K562 | blood: | n/a | n/a |
45 | CCNT2 | chr13:66617039-66617239 | K562 | blood: | n/a | n/a |
46 | CEBPB | chr13:66487605-66487805 | A549 | lung: | n/a | n/a |
47 | CEBPB | chr13:66405298-66405623 | IMR90 | lung: | n/a | chr13:66405470-66405481 |
48 | CEBPB | chr13:66888568-66888896 | A549 | lung: | n/a | n/a |
49 | CEBPB | chr13:66840058-66840316 | IMR90 | lung: | n/a | chr13:66840131-66840144 chr13:66840121-66840133 |
50 | CEBPB | chr13:66491284-66491489 | HepG2 | liver: | n/a | chr13:66491416-66491427 chr13:66491415-66491426 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:66983730-66983780 | LNCaP | prostate: | n/a |
2 | chr13:66983730-66983780 | LNCaP | prostate: | n/a |
3 | chr13:66583686-66583736 | AG10803 | skin: | n/a |
4 | chr13:66983730-66983780 | SK-N-MC | brain: | n/a |
5 | chr13:66501111-66501161 | AG04449 | skin: | fetal |
6 | chr13:66322551-66322601 | AG04450 | lung: | fetal |
7 | chr13:66919912-66919962 | H1-hESC | embryonic stem cell: | embryo |
8 | chr13:66607275-66607325 | HCT-116 | colon: | n/a |
9 | chr13:67101887-67101937 | SK-N-SH_RA | brain: | n/a |
10 | chr13:66501111-66501161 | RPTEC | kidney: | n/a |
11 | chr13:66878738-66878788 | SAEC | small airway: | n/a |
12 | chr13:66983730-66983780 | NHDF-neo | bronchial: | n/a |
13 | chr13:66322551-66322601 | Hepatocyte | liver: | n/a |
14 | chr13:66501111-66501161 | HUVEC | blood vessel: | n/a |
15 | chr13:66583583-66583633 | PANC-1 | pancreas: | n/a |
16 | chr13:66981290-66981340 | ovcar-3 | ovarian: | n/a |
17 | chr13:66983676-66983726 | HIPEpiC | eye: | n/a |
18 | chr13:66929165-66929215 | SK-N-SH_RA | brain: | n/a |
19 | chr13:66983676-66983726 | HAEpiC | amniotic membrane: | n/a |
20 | chr13:66983676-66983726 | K562 | blood: | n/a |
21 | chr13:66983730-66983780 | GM12878 | blood: | n/a |
22 | chr13:66983676-66983726 | HRPEpiC | eye: | n/a |
23 | chr13:66981290-66981340 | NHBE | bronchial: | n/a |
24 | chr13:66878738-66878788 | AoSMC | blood vessel: | n/a |
25 | chr13:66929165-66929215 | AG09309 | skin: | n/a |
26 | chr13:66878738-66878788 | U87 | brain: | n/a |
27 | chr13:67101887-67101937 | AoSMC | blood vessel: | n/a |
28 | chr13:66878738-66878788 | HPAEpiC | pulmonary alveolar: | n/a |
29 | chr13:66322551-66322601 | HEK293 | kidney: | embryo |
30 | chr13:66322551-66322601 | HepG2 | liver: | n/a |
31 | chr13:66583583-66583633 | NHBE | bronchial: | n/a |
32 | chr13:66919912-66919962 | GM12891 | blood: | n/a |
33 | chr13:66981290-66981340 | HRE | kidney: | n/a |
34 | chr13:66583583-66583633 | Jurkat | blood: | n/a |
35 | chr13:66322551-66322601 | CMK | blood: | n/a |
36 | chr13:66983676-66983726 | CMK | blood: | n/a |
37 | chr13:66583686-66583736 | HCPEpiC | choroid plexus: | n/a |
38 | chr13:66929165-66929215 | HCM | heart: | n/a |
39 | chr13:66583686-66583736 | SKMC | muscle: | n/a |
40 | chr13:66583583-66583633 | SAEC | small airway: | n/a |
41 | chr13:66929165-66929215 | Jurkat | blood: | n/a |
42 | chr13:66981290-66981340 | U87 | brain: | n/a |
43 | chr13:66583583-66583633 | U87 | brain: | n/a |
44 | chr13:66983676-66983726 | T-47D | breast: | n/a |
45 | chr13:66583686-66583736 | AG09319 | gingival: | n/a |
46 | chr13:66983676-66983726 | HCF | heart: | n/a |
47 | chr13:66322551-66322601 | BJ | skin: | n/a |
48 | chr13:66983730-66983780 | NB4 | blood: | n/a |
49 | chr13:66919912-66919962 | T-47D | breast: | n/a |
50 | chr13:66583686-66583736 | AG04449 | skin: | fetal |
(count:49 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:67118715..67120725-chr13:67121848..67124669,2 | K562 | blood: | |
2 | chr13:66582815..66585533-chr13:66632919..66634778,2 | K562 | blood: | |
3 | chr13:66978910..66981496-chr13:66983194..66984802,2 | K562 | blood: | |
4 | chr13:66423397..66425712-chr13:66435469..66437961,2 | K562 | blood: | |
5 | chr13:66296680..66298971-chr13:66300615..66302352,2 | MCF-7 | breast: | |
6 | chr13:66377468..66378968-chr8:43092929..43094908,2 | MCF-7 | breast: | |
7 | chr13:66901663..66903255-chr13:66906195..66907818,2 | K562 | blood: | |
8 | chr13:66824109..66824810-chr16:71735977..71736631,2 | MCF-7 | breast: | |
9 | chr13:66582815..66585533-chr13:66632919..66634778,2 | K562 | blood: | |
10 | chr13:66500564..66501578-chr13:66540848..66541721,3 | MCF-7 | breast: | |
11 | chr13:66879908..66881972-chr13:66902872..66904425,2 | K562 | blood: | |
12 | chr13:66363582..66364363-chr21:32786060..32786817,2 | MCF-7 | breast: | |
13 | chr12:28240626..28241152-chr13:66662383..66662898,2 | MCF-7 | breast: | |
14 | chr13:66782802..66785217-chr13:66787154..66788780,2 | MCF-7 | breast: | |
15 | chr13:66909684..66911530-chr13:66916300..66919201,2 | K562 | blood: | |
16 | chr13:66557440..66557967-chr13:82054818..82055319,2 | MCF-7 | breast: | |
17 | chr13:67118715..67120725-chr13:67121848..67124669,2 | K562 | blood: | |
18 | chr13:66230680..66231446-chr13:66540896..66541772,3 | MCF-7 | breast: | |
19 | chr13:67027655..67028155-chr8:43092779..43093429,2 | MCF-7 | breast: | |
20 | chr13:66500564..66501578-chr13:66540848..66541721,3 | MCF-7 | breast: | |
21 | chr13:66677587..66680337-chr13:66682446..66685267,2 | K562 | blood: | |
22 | chr13:66677587..66680337-chr13:66682446..66685267,2 | K562 | blood: | |
23 | chr13:66909684..66911530-chr13:66916300..66919201,2 | K562 | blood: | |
24 | chr13:67065287..67067165-chr13:67261665..67264552,2 | MCF-7 | breast: | |
25 | chr13:66296680..66298971-chr13:66300615..66302352,2 | MCF-7 | breast: | |
26 | chr13:66358245..66360880-chr16:71346372..71347872,2 | MCF-7 | breast: | |
27 | chr13:66918574..66921439-chr13:66945401..66948264,2 | MCF-7 | breast: | |
28 | chr13:67090368..67092830-chr13:67094169..67095769,2 | K562 | blood: | |
29 | chr13:66725373..66727381-chr13:66728791..66730521,2 | K562 | blood: | |
30 | chr13:66782802..66785217-chr13:66787154..66788780,2 | MCF-7 | breast: | |
31 | chr13:66879908..66881972-chr13:66902872..66904425,2 | K562 | blood: | |
32 | chr13:66423397..66425712-chr13:66435469..66437961,2 | K562 | blood: | |
33 | chr13:67065181..67066891-chr13:67075366..67077021,2 | MCF-7 | breast: | |
34 | chr13:66918574..66921439-chr13:66945401..66948264,2 | MCF-7 | breast: | |
35 | chr13:66622814..66624893-chr13:66627297..66630041,2 | K562 | blood: | |
36 | chr13:66622814..66624893-chr13:66627297..66630041,2 | K562 | blood: | |
37 | chr13:67090368..67092830-chr13:67094169..67095769,2 | K562 | blood: | |
38 | chr13:66901663..66903255-chr13:66906195..66907818,2 | K562 | blood: | |
39 | chr13:66355137..66357196-chr13:66362374..66364366,2 | K562 | blood: | |
40 | chr13:66606276..66609107-chr13:66609295..66610970,2 | MCF-7 | breast: | |
41 | chr13:67065181..67066891-chr13:67075366..67077021,2 | MCF-7 | breast: | |
42 | chr13:67109100..67110769-chr13:67114510..67116820,2 | K562 | blood: | |
43 | chr13:67124095..67126180-chr13:67127910..67129667,2 | K562 | blood: | |
44 | chr13:66606276..66609107-chr13:66609295..66610970,2 | MCF-7 | breast: | |
45 | chr13:67109100..67110769-chr13:67114510..67116820,2 | K562 | blood: | |
46 | chr10:29694023..29695542-chr13:67026635..67028155,2 | MCF-7 | breast: | |
47 | chr13:66725373..66727381-chr13:66728791..66730521,2 | K562 | blood: | |
48 | chr13:66978910..66981496-chr13:66983194..66984802,2 | K562 | blood: | |
49 | chr13:67066396..67067204-chr13:67263202..67263856,3 | MCF-7 | breast: |
(count:24 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PCDH9-6 | chr13:66430425-66430559 | NONHSAT034195 |
2 | lnc-PCDH9-1 | chr13:66805874-66806206 | ENSG00000250631 |
3 | lnc-AL445989.1-8 | chr13:66451989-66452351 | ENSG00000234767 |
4 | lnc-AL445989.1-26 | chr13:66843129-66844590 | NONHSAT034207 |
5 | lnc-AL445989.1-10 | chr13:66515195-66515334 | XLOC_010415 |
6 | lnc-AL445989.1-13 | chr13:66878003-66878146 | ENSG00000234527.1 |
7 | lnc-AL445989.1-11 | chr13:66628093-66628119 | XLOC_010416 |
8 | lnc-PCDH9-1 | chr13:66715500-66715905 | ENSG00000250631 |
9 | lnc-AL445989.1-8 | chr13:66449839-66449901 | ENSG00000234767 |
10 | lnc-AL445989.1-26 | chr13:66846998-66847098 | NONHSAT034208 |
11 | lnc-AL445989.1-9 | chr13:66510419-66510480 | XLOC_010414 |
12 | lnc-AL445989.1-26 | chr13:66851684-66852109 | NONHSAT034208 |
13 | lnc-PCDH9-1 | chr13:66718649-66718753 | ENSG00000250631 |
14 | lnc-AL445989.1-13 | chr13:66897306-66897693 | ENSG00000234527.1 |
15 | lnc-AL445989.1-8 | chr13:66449839-66449901 | NONHSAT034197 |
16 | lnc-AL445989.1-8 | chr13:66440306-66440375 | ENSG00000234767 |
17 | lnc-AL445989.1-8 | chr13:66440195-66440400 | NONHSAT034197 |
18 | lnc-AL445989.1-8 | chr13:66451989-66452351 | NONHSAT034197 |
19 | lnc-AL445989.1-11 | chr13:66569686-66569896 | XLOC_010416 |
20 | lnc-AL445989.1-26 | chr13:66844520-66844603 | NONHSAT034208 |
21 | lnc-AL445989.1-10 | chr13:66546596-66551943 | XLOC_010415 |
22 | lnc-AL445989.1-9 | chr13:66503637-66503853 | XLOC_010414 |
23 | lnc-AL445989.1-11 | chr13:66569993-66570140 | XLOC_010416 |
24 | lnc-PCDH9-6 | chr13:66410063-66410464 | NONHSAT034195 |
miRNA name | Chromosome Location | mirBase accession |
---|---|---|
hsa-miR-4704-5p | chr13:66792391-66792412 | MIMAT0019803 |
hsa-miR-548x-3p | chr13:66540484-66540503 | MIMAT0015081 |
hsa-miR-4704-3p | chr13:66792428-66792449 | MIMAT0019804 |
(count:3 , 50 per page) page:
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No. | miRNA target gene | miRNA name | Chromosome Location | mirBase accession |
---|---|---|---|---|
1 | PCDH9 | hsa-miR-155-5p | chr13:66878327-66878320 | |
2 | PCDH9 | hsa-miR-155-5p | chr13:66878321-66878343 | |
3 | PCDH9 | hsa-miR-155-5p | chr13:66877756-66877779 |
Variant related genes | Relation type |
---|---|
MIR4704 | TF binding region |
TRIM60P19 | TF binding region |
PCDH9-AS1 | TF binding region |
LINC01052 | TF binding region |
MIR548X2 | TF binding region |
HNRNPA3P5 | TF binding region |
ENSG00000221685 | TF binding region |
MIR4704 | CpG island |
TRIM60P19 | CpG island |
PCDH9-AS1 | CpG island |
LINC01052 | CpG island |
MIR548X2 | CpG island |
HNRNPA3P5 | CpG island |
ENSG00000221685 | CpG island |
ENSG00000236565 | chromatin interactions |
INO80D | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs549161686 | chr13:66298132-66298133 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs566213617 | chr13:66298146-66298147 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs189171760 | chr13:66298152-66298153 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs375424063 | chr13:66298160-66298161 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs541490992 | chr13:66298177-66298178 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs4098535 | chr13:66298181-66298182 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs571951006 | chr13:66298183-66298184 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs537709480 | chr13:66298185-66298186 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs373182647 | chr13:66298273-66298274 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs182150090 | chr13:66298289-66298290 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs574109889 | chr13:66298320-66298321 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs536855295 | chr13:66298350-66298351 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs116457653 | chr13:66298360-66298361 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs571848688 | chr13:66298364-66298365 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs578094972 | chr13:66298371-66298372 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs540608023 | chr13:66298383-66298384 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs563766827 | chr13:66298436-66298437 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs186865844 | chr13:66298458-66298459 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs543273157 | chr13:66298467-66298468 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs563604276 | chr13:66298504-66298505 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs7992551 | chr13:66298543-66298544 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs549202868 | chr13:66298626-66298627 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs74789345 | chr13:66298628-66298629 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs528627963 | chr13:66298638-66298639 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs372506088 | chr13:66298657-66298658 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs563689043 | chr13:66298667-66298668 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs551929471 | chr13:66298669-66298670 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs9571466 | chr13:66298690-66298691 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
29 | rs537448036 | chr13:66298698-66298699 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs550944712 | chr13:66298709-66298710 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs567993439 | chr13:66298722-66298723 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs536434044 | chr13:66298738-66298739 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs543050186 | chr13:66298758-66298759 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs144408296 | chr13:66298760-66298761 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs377651745 | chr13:66298764-66298765 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs190057995 | chr13:66298778-66298779 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs534385800 | chr13:66298797-66298798 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs557441169 | chr13:66298798-66298799 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs182126907 | chr13:66298801-66298802 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs529918573 | chr13:66298805-66298806 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs143139948 | chr13:66298813-66298814 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs185608840 | chr13:66298816-66298817 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs190425801 | chr13:66298819-66298820 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs542439573 | chr13:66298839-66298840 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs146403343 | chr13:66298860-66298861 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs377643820 | chr13:66298868-66298869 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs370148343 | chr13:66298920-66298921 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs528308870 | chr13:66298939-66298940 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs370859763 | chr13:66298985-66298986 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs551855517 | chr13:66298986-66298987 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Prostate cancer | 16705090 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 22495311 | CNVD |
Chordoma | 21602918 | CNVD |
Bladder cancer | 21949216 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 21518781 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Intracranial aneurysm | 19064780 | CNVD |
Breast cancer | 19287154 | CNVD |
Acute myeloid leukemia | 18379011 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Ependymoma | 16718352 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16272173 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Breast cancer | 17133270 | CNVD |
Myoepithelioma | 18604193 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Prostate cancer | 16573809 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Paraganglioma | 21461997 | CNVD |
Pheochromocytoma | 21461997 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Prostate cancer | 17245344 | CNVD |
Prostate cancer | 18632612 | CNVD |
Colorectal cancer | 21586687 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Developmental delay | 21147756 | CNVD |
Melanoma | 18172304 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Merkel cell carcinoma | 19020549 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Breast cancer | 21858162 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Gastric cancer | 17908304 | CNVD |
Glioblastoma multiforme | 21750150 | CNVD |
Breast cancer | 17603634 | CNVD |
Cancer | 21183584 | CNVD |
Breast cancer | 17393978 | CNVD |
Splenic marginal zone lymphoma | 18492102 | CNVD |
Liposarcoma | 21253554 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
abnormal development | 18461090 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Prostate cancer | 16461572 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
Intellectual disability | 21811512 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Melanoma | 20877625 | CNVD |
T-cell lymphomas | 22341440 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Prostate cancer | 22341455 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:66298000-66298800 | Enhancers | Dnd41 | blood |
2 | chr13:66298200-66298600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr13:66298200-66298600 | Enhancers | Fetal Stomach | stomach |
4 | chr13:66298200-66298800 | Enhancers | Muscle Satellite Cultured Cells | -- |
5 | chr13:66298200-66298800 | Enhancers | Fetal Kidney | kidney |
6 | chr13:66298200-66298800 | Enhancers | NHDF-Ad | bronchial |
7 | chr13:66298200-66299400 | Enhancers | Fetal Lung | lung |
8 | chr13:66298200-66299800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
9 | chr13:66298200-66300200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
10 | chr13:66298800-66299200 | Weak transcription | Fetal Kidney | kidney |
11 | chr13:66299200-66299800 | Enhancers | Fetal Kidney | kidney |
12 | chr13:66299400-66299800 | Enhancers | Fetal Heart | heart |
13 | chr13:66307000-66307600 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
14 | chr13:66318200-66319600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
15 | chr13:66318400-66318800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
16 | chr13:66318400-66319600 | Enhancers | Osteobl | bone |
17 | chr13:66318800-66319000 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
18 | chr13:66318800-66319400 | Enhancers | Adipose Nuclei | Adipose |
19 | chr13:66318800-66320600 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
20 | chr13:66319000-66319600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
21 | chr13:66330600-66331400 | ZNF genes & repeats | ES-I3 Cell Line | embryonic stem cell |
22 | chr13:66336600-66337200 | Enhancers | Fetal Kidney | kidney |
23 | chr13:66342600-66343200 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
24 | chr13:66343000-66343400 | Enhancers | H1 Cell Line | embryonic stem cell |
25 | chr13:66343000-66343400 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
26 | chr13:66347000-66347200 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
27 | chr13:66347200-66349800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
28 | chr13:66357600-66358000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
29 | chr13:66358000-66358400 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
30 | chr13:66363800-66364200 | Enhancers | Osteobl | bone |
31 | chr13:66363800-66364600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
32 | chr13:66363800-66364600 | Enhancers | Muscle Satellite Cultured Cells | -- |
33 | chr13:66363800-66364600 | Enhancers | HSMMtube | muscle |
34 | chr13:66364200-66364600 | Flanking Active TSS | Osteobl | bone |
35 | chr13:66372000-66373600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
36 | chr13:66373600-66376400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
37 | chr13:66376400-66377200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
38 | chr13:66376600-66377000 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
39 | chr13:66377000-66379000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
40 | chr13:66377200-66379000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
41 | chr13:66379000-66379200 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
42 | chr13:66379000-66379400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
43 | chr13:66379200-66379600 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
44 | chr13:66379400-66382200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
45 | chr13:66379600-66379800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
46 | chr13:66379800-66382400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
47 | chr13:66380800-66382000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
48 | chr13:66381000-66382800 | Enhancers | Muscle Satellite Cultured Cells | -- |
49 | chr13:66381000-66382800 | Enhancers | Osteobl | bone |
50 | chr13:66381400-66383200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |