Variant report

Variant	nsv5361
Chromosome Location	chr6:78401496-78457640
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:78449866..78450562-chr6:79223273..79224176,3	MCF-7	breast:
2	chr6:78175755..78176369-chr6:78410019..78410778,2	MCF-7	breast:
3	chr6:78450229..78450915-chr6:79519607..79520138,2	MCF-7	breast:
4	chr6:78449862..78450824-chr6:78635645..78636377,3	MCF-7	breast:
5	chr6:78409901..78411994-chr6:78412184..78414411,2	MCF-7	breast:
6	chr6:78409901..78411994-chr6:78412184..78414411,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IRAK1BP1-5	chr6:78419459-78419528	l_3208_chr6:78417002-78689824_testes
2	lnc-IRAK1BP1-5	chr6:78457094-78457339	l_3208_chr6:78417002-78689824_testes
3	lnc-IRAK1BP1-5	chr6:78417003-78417143	l_3208_chr6:78417002-78689824_testes

No data

Extended variants
information (count: 714 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:714 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553500680	chr6:78408604-78408605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs566747689	chr6:78408628-78408629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs545658591	chr6:78408635-78408636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538926962	chr6:78408648-78408649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113245917	chr6:78408657-78408658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200376369	chr6:78408658-78408659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543449707	chr6:78408663-78408664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs556683686	chr6:78408666-78408667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs573637492	chr6:78408671-78408672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542372434	chr6:78408677-78408678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs559560446	chr6:78408679-78408680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528321387	chr6:78408680-78408681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs185892631	chr6:78408693-78408694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs4579319	chr6:78408718-78408719	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs530719004	chr6:78408728-78408729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs9448172	chr6:78408737-78408738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs375981139	chr6:78408766-78408767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561142646	chr6:78408769-78408770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530184012	chr6:78408772-78408773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370929175	chr6:78408773-78408774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs565291816	chr6:78408777-78408778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532502705	chr6:78408804-78408805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190217044	chr6:78408805-78408806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs9443454	chr6:78408813-78408814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs182518922	chr6:78408817-78408818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187516644	chr6:78408844-78408845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs569159193	chr6:78408887-78408888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs538163179	chr6:78408889-78408890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113095289	chr6:78408906-78408907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76033479	chr6:78408925-78408926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs9352512	chr6:78408937-78408938	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs190346209	chr6:78408968-78408969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9448173	chr6:78408999-78409000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573577900	chr6:78409002-78409003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536322482	chr6:78409052-78409053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs553138296	chr6:78409061-78409062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs9352513	chr6:78409063-78409064	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs545179506	chr6:78409067-78409068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs78702630	chr6:78409072-78409073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79049766	chr6:78409074-78409075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs200123714	chr6:78409099-78409100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs575462922	chr6:78409100-78409101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs544205090	chr6:78409105-78409106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs13191299	chr6:78409111-78409112	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs9443455	chr6:78409114-78409115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9448174	chr6:78409119-78409120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs13191190	chr6:78409130-78409131	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs532471615	chr6:78409144-78409145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188953927	chr6:78409155-78409156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569364405	chr6:78409189-78409190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78408600-78409800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:78408600-78410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:78409800-78410600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr6:78410200-78410400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr6:78410200-78410400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:78410200-78410800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr6:78410200-78411200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr6:78410400-78413600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:78410400-78413600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:78410600-78412600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:78410800-78412800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:78411200-78412600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:78411800-78415000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:78412200-78414800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:78412200-78414800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:78412600-78414200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:78412600-78414400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:78412800-78413000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:78413000-78413600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:78413000-78414800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:78413400-78414600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:78413600-78413800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:78413600-78413800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:78413600-78414000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:78413800-78414600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:78414000-78415200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:78414600-78414800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:78415200-78415400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:78424400-78424800	Enhancers	Gastric	stomach
30	chr6:78425600-78426600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:78425800-78426200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:78425800-78426400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:78425800-78426400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:78425800-78426400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:78425800-78426800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:78425800-78426800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:78425800-78426800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:78426000-78426600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:78426000-78426800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:78426200-78426600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr6:78436000-78436400	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:78436000-78436600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:78436000-78436600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr6:78436000-78436600	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:78436200-78437000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr6:78436200-78437000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr6:78437000-78438200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:78438400-78438600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr6:78450000-78450400	Enhancers	Liver	Liver
50	chr6:78455800-78458400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links