Variant report

Variant	nsv536620
Chromosome Location	chr3:85394816-85460325
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:85440573-85440896	A549	lung:	n/a	chr3:85440748-85440759 chr3:85440750-85440759 chr3:85440748-85440761 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440749-85440760 chr3:85440748-85440761
2	CEBPB	chr3:85423130-85423398	A549	lung:	n/a	chr3:85423236-85423247
3	CEBPB	chr3:85423175-85423346	H1-hESC	embryonic stem cell:	n/a	chr3:85423236-85423247
4	CEBPB	chr3:85440607-85440855	K562	blood:	n/a	chr3:85440748-85440759 chr3:85440750-85440759 chr3:85440748-85440761 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440749-85440760 chr3:85440748-85440761
5	CEBPB	chr3:85440642-85440887	H1-hESC	embryonic stem cell:	n/a	chr3:85440748-85440759 chr3:85440750-85440759 chr3:85440748-85440761 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440749-85440760 chr3:85440748-85440761
6	CEBPB	chr3:85415054-85415293	HepG2	liver:	n/a	chr3:85415166-85415177
7	CEBPB	chr3:85440604-85440910	HepG2	liver:	n/a	chr3:85440748-85440759 chr3:85440750-85440759 chr3:85440748-85440761 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440749-85440760 chr3:85440748-85440761
8	CEBPB	chr3:85423114-85423389	IMR90	lung:	n/a	chr3:85423236-85423247
9	CEBPB	chr3:85440588-85440884	Hela-S3	cervix:	n/a	chr3:85440748-85440759 chr3:85440750-85440759 chr3:85440748-85440761 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440749-85440760 chr3:85440748-85440761
10	CEBPB	chr3:85423124-85423388	HepG2	liver:	n/a	chr3:85423236-85423247
11	CEBPB	chr3:85440575-85440914	IMR90	lung:	n/a	chr3:85440748-85440759 chr3:85440750-85440759 chr3:85440748-85440761 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440750-85440759 chr3:85440749-85440760 chr3:85440748-85440761
12	CEBPB	chr3:85415076-85415195	H1-hESC	embryonic stem cell:	n/a	chr3:85415166-85415177
13	CTCF	chr3:85409905-85410322	A549	lung:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
14	CTCF	chr3:85410100-85410250	GM12878	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410106-85410119
15	CTCF	chr3:85410000-85410150	GM12866	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
16	CTCF	chr3:85409980-85410130	A549	lung:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
17	CTCF	chr3:85410560-85410710	BE2_C	brain:	n/a	n/a
18	CTCF	chr3:85410019-85410167	Fibrobl	skin:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
19	CTCF	chr3:85410000-85410150	GM12801	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
20	CTCF	chr3:85410040-85410190	HBMEC	blood vessel:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
21	CTCF	chr3:85410020-85410170	GM12866	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
22	CTCF	chr3:85409981-85410234	HepG2	liver:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
23	CTCF	chr3:85410060-85410210	NHDF-neo	bronchial:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
24	CTCF	chr3:85409980-85410130	K562	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
25	CTCF	chr3:85410000-85410150	GM12864	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
26	CTCF	chr3:85410040-85410190	GM12875	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
27	CTCF	chr3:85410060-85410210	GM12864	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
28	CTCF	chr3:85410020-85410170	WERI-Rb-1	eye:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
29	CTCF	chr3:85410020-85410170	HEEpiC	esophagus:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
30	CTCF	chr3:85409914-85410200	ECC-1	luminal epithelium:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
31	CTCF	chr3:85410020-85410170	HMEC	breast:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
32	CTCF	chr3:85409957-85410248	Gliobla	brain:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
33	CTCF	chr3:85410020-85410170	GM12869	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
34	CTCF	chr3:85410000-85410150	MCF-7	breast:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
35	CTCF	chr3:85410020-85410170	HEK293	kidney:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
36	CTCF	chr3:85410016-85410226	GM10266	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
37	CTCF	chr3:85410000-85410150	HMF	breast:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
38	CTCF	chr3:85409946-85410277	K562	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
39	CTCF	chr3:85410020-85410170	GM12872	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
40	CTCF	chr3:85410000-85410150	HepG2	liver:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
41	CTCF	chr3:85410012-85410215	GM13977	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
42	CTCF	chr3:85410020-85410170	GM12868	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
43	CTCF	chr3:85410000-85410150	GM12865	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
44	CTCF	chr3:85410040-85410190	HA-sp	spinal cord:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
45	CTCF	chr3:85410000-85410150	RPTEC	kidney:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
46	CTCF	chr3:85409986-85410196	GM12892	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
47	CTCF	chr3:85410020-85410170	GM12873	blood:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
48	CTCF	chr3:85410060-85410210	BE2_C	brain:	n/a	chr3:85410104-85410122 chr3:85410112-85410120 chr3:85410111-85410119 chr3:85410099-85410120 chr3:85410106-85410119
49	CTCF	chr3:85409960-85410110	HFF-Myc	foreskin:	n/a	n/a
50	CTCF	chr3:85409960-85410110	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:85453248..85455514-chr3:85462247..85464334,2	K562	blood:
2	chr3:85457628..85458566-chr3:130193477..130193997,2	MCF-7	breast:
3	chr3:85454106..85456659-chr3:85459742..85462489,2	K562	blood:
4	chr3:85425596..85428443-chr3:85428590..85430282,2	K562	blood:
5	chr3:85401815..85404016-chr3:85405205..85407101,2	K562	blood:
6	chr3:85023240..85023756-chr3:85409642..85410352,2	MCF-7	breast:
7	chr3:85448906..85450732-chr3:85454290..85457141,2	K562	blood:
8	chr3:85401815..85404016-chr3:85405205..85407101,2	K562	blood:
9	chr3:85439579..85441215-chr3:85551442..85553756,2	K562	blood:
10	chr3:85353291..85354669-chr3:85409554..85410988,3	K562	blood:
11	chr3:85454106..85456659-chr3:85459742..85462489,2	K562	blood:
12	chr3:85409636..85410536-chr3:85624933..85625875,2	MCF-7	breast:
13	chr3:85455981..85458898-chr3:85554544..85556051,2	K562	blood:
14	chr3:84597130..84597691-chr3:85409635..85410581,3	MCF-7	breast:
15	chr3:85448906..85450732-chr3:85454290..85457141,2	K562	blood:
16	chr3:85425596..85428443-chr3:85428590..85430282,2	K562	blood:
17	chr3:85353413..85354226-chr3:85409666..85410591,2	MCF-7	breast:

miRNA name	Chromosome Location	mirBase accession
hsa-miR-5688	chr3:85434911-85434932	MIMAT0022479

Variant related genes	Relation type
MIR5688	TF binding region

Extended variants
information (count: 2174 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:2174 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529362425	chr3:85394835-85394836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs190644573	chr3:85394867-85394868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182863751	chr3:85394935-85394936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577114022	chr3:85394941-85394942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs533483993	chr3:85394945-85394946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs551653494	chr3:85394963-85394964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575710184	chr3:85394988-85394989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs531020379	chr3:85394995-85394996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189252440	chr3:85394996-85394997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs568085144	chr3:85395095-85395096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535528427	chr3:85395173-85395174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs78195640	chr3:85395179-85395180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs146321831	chr3:85395297-85395298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs564149116	chr3:85395317-85395318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138341460	chr3:85395319-85395320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557778842	chr3:85395325-85395326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs1368737	chr3:85395341-85395342	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs543276435	chr3:85395351-85395352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191791997	chr3:85395416-85395417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182879633	chr3:85395434-85395435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs73845432	chr3:85395491-85395492	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs541114329	chr3:85395543-85395544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs559365999	chr3:85395553-85395554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531048475	chr3:85395589-85395590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533157198	chr3:85395592-85395593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs76820273	chr3:85395639-85395640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541966419	chr3:85395651-85395652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs544959590	chr3:85395755-85395756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs72903287	chr3:85395808-85395809	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs187475702	chr3:85395859-85395860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs533107979	chr3:85395877-85395878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142740942	chr3:85395900-85395901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs529047742	chr3:85395912-85395913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs9880397	chr3:85395922-85395923	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs565742271	chr3:85395924-85395925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs7612713	chr3:85395948-85395949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527289941	chr3:85395974-85395975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557709625	chr3:85395992-85395993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs569882531	chr3:85396025-85396026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs34208275	chr3:85396029-85396030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537333056	chr3:85396044-85396045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62253087	chr3:85396132-85396133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546930862	chr3:85396193-85396194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs34019658	chr3:85396204-85396205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs35749489	chr3:85396206-85396207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371798429	chr3:85396227-85396228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs555310929	chr3:85396250-85396251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113407180	chr3:85396302-85396303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs534463456	chr3:85396312-85396313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs553058033	chr3:85396313-85396314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Autism	22102821	CNVD
Prostate cancer	21307934	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85394800-85396800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85396800-85397800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:85397800-85398200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:85397800-85398400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:85398200-85398800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:85398200-85399000	Active TSS	Brain Cingulate Gyrus	brain
7	chr3:85398200-85399200	Active TSS	Brain Hippocampus Middle	brain
8	chr3:85398200-85400200	Active TSS	Brain Anterior Caudate	brain
9	chr3:85398400-85398800	Active TSS	Brain Substantia Nigra	brain
10	chr3:85398400-85399000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:85398400-85399000	Active TSS	A549	lung
12	chr3:85398400-85399200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr3:85398800-85399200	Flanking Active TSS	Brain Substantia Nigra	brain
14	chr3:85399000-85399200	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr3:85399000-85402000	Weak transcription	A549	lung
16	chr3:85399200-85400000	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:85399200-85400400	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:85399200-85401000	Enhancers	Brain Substantia Nigra	brain
19	chr3:85399200-85404000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:85400000-85400600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:85400200-85400400	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr3:85400400-85401000	Enhancers	Brain Anterior Caudate	brain
23	chr3:85400400-85401000	Enhancers	Brain Hippocampus Middle	brain
24	chr3:85400400-85401000	Enhancers	Fetal Brain Male	brain
25	chr3:85400600-85400800	Enhancers	Brain Cingulate Gyrus	brain
26	chr3:85400600-85401000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:85400800-85404000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:85401000-85403800	Weak transcription	Brain Anterior Caudate	brain
29	chr3:85401000-85404000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:85401000-85404000	Weak transcription	Brain Substantia Nigra	brain
31	chr3:85402000-85402400	Enhancers	A549	lung
32	chr3:85403800-85404200	Enhancers	Brain Angular Gyrus	brain
33	chr3:85403800-85405200	Enhancers	Brain Anterior Caudate	brain
34	chr3:85404000-85404400	Enhancers	Brain Cingulate Gyrus	brain
35	chr3:85404000-85404400	Enhancers	Brain Substantia Nigra	brain
36	chr3:85404000-85404600	Enhancers	Brain Hippocampus Middle	brain
37	chr3:85404000-85404600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr3:85404200-85404600	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr3:85404400-85404600	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr3:85404400-85404800	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr3:85404600-85405000	Active TSS	Brain Substantia Nigra	brain
42	chr3:85404600-85405200	Active TSS	Brain Angular Gyrus	brain
43	chr3:85404600-85405200	Active TSS	Brain Hippocampus Middle	brain
44	chr3:85404600-85410400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:85404800-85406000	Enhancers	Brain Cingulate Gyrus	brain
46	chr3:85405000-85409800	Weak transcription	Brain Substantia Nigra	brain
47	chr3:85405200-85405400	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr3:85405200-85405400	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr3:85405200-85405400	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr3:85405400-85405800	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links