Variant report

Variant	nsv536742
Chromosome Location	chr3:141831927-142078726
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3112)
CpG islands
(count:1408)
Chromatin interactive
region (count:149)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:3112 , 50 per page) page: 1 2 3 4 5 6 7 ... 63

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:141944333-141944542	K562	blood:	n/a	n/a
2	ARID3A	chr3:141845072-141845387	K562	blood:	n/a	n/a
3	ARID3A	chr3:141845145-141845331	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:142034796-142035079	HepG2	liver:	n/a	n/a
5	ARID3A	chr3:142037995-142038366	K562	blood:	n/a	n/a
6	ARID3A	chr3:141944275-141944587	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:142034735-142035065	K562	blood:	n/a	n/a
8	ARID3A	chr3:141868086-141868286	HepG2	liver:	n/a	n/a
9	ARID3A	chr3:141848736-141848803	HepG2	liver:	n/a	n/a
10	ARID3A	chr3:142004029-142004406	K562	blood:	n/a	n/a
11	ARID3A	chr3:141868710-141868857	HepG2	liver:	n/a	n/a
12	ARID3A	chr3:141941528-141942036	K562	blood:	n/a	n/a
13	ATF1	chr3:142026474-142026530	K562	blood:	n/a	n/a
14	ATF1	chr3:142034743-142035113	K562	blood:	n/a	n/a
15	ATF1	chr3:142038012-142038223	K562	blood:	n/a	n/a
16	ATF1	chr3:141944202-141944637	K562	blood:	n/a	n/a
17	ATF1	chr3:142004039-142004362	K562	blood:	n/a	n/a
18	ATF1	chr3:141994868-141995043	K562	blood:	n/a	n/a
19	ATF2	chr3:141944124-141944603	GM12878	blood:	n/a	n/a
20	ATF2	chr3:141944313-141944572	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF3	chr3:141944306-141944624	K562	blood:	n/a	chr3:141944456-141944466
22	ATF3	chr3:142034698-142035057	K562	blood:	n/a	n/a
23	BACH1	chr3:142037995-142038332	H1-hESC	embryonic stem cell:	n/a	n/a
24	BACH1	chr3:141988570-141988640	K562	blood:	n/a	n/a
25	BACH1	chr3:141909646-141909689	K562	blood:	n/a	n/a
26	BACH1	chr3:142037969-142038499	K562	blood:	n/a	n/a
27	BACH1	chr3:141867733-141868966	H1-hESC	embryonic stem cell:	n/a	n/a
28	BACH1	chr3:141944121-141944594	H1-hESC	embryonic stem cell:	n/a	n/a
29	BATF	chr3:142074556-142074897	GM12878	blood:	n/a	n/a
30	BATF	chr3:141975772-141975937	GM12878	blood:	n/a	n/a
31	BCLAF1	chr3:141998835-141999218	GM12878	blood:	n/a	n/a
32	BCLAF1	chr3:141998774-141999206	GM12878	blood:	n/a	n/a
33	BCLAF1	chr3:141944193-141944635	GM12878	blood:	n/a	n/a
34	BHLHE40	chr3:141943947-141944618	K562	blood:	n/a	chr3:141944033-141944049
35	BHLHE40	chr3:141998848-141999153	K562	blood:	n/a	n/a
36	BHLHE40	chr3:141867704-141868571	HepG2	liver:	n/a	n/a
37	BHLHE40	chr3:142066400-142066735	K562	blood:	n/a	n/a
38	BHLHE40	chr3:141998833-141999090	HepG2	liver:	n/a	n/a
39	BHLHE40	chr3:141868133-141868604	GM12878	blood:	n/a	n/a
40	BHLHE40	chr3:141998901-141999171	GM12878	blood:	n/a	n/a
41	BHLHE40	chr3:141944144-141944582	GM12878	blood:	n/a	n/a
42	BHLHE40	chr3:141944084-141944604	HepG2	liver:	n/a	n/a
43	BRCA1	chr3:141867873-141868061	HepG2	liver:	n/a	n/a
44	BRCA1	chr3:141933218-141933348	Hela-S3	cervix:	n/a	n/a
45	BRCA1	chr3:141994588-141995155	Hela-S3	cervix:	n/a	n/a
46	BRCA1	chr3:141944283-141944600	Hela-S3	cervix:	n/a	n/a
47	CBX3	chr3:142003802-142004433	K562	blood:	n/a	n/a
48	CBX3	chr3:141868168-141868537	K562	blood:	n/a	n/a
49	CBX3	chr3:141844975-141845430	HCT-116	colon:	n/a	n/a
50	CBX3	chr3:141951133-141951609	K562	blood:	n/a	n/a

(count:1408 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:141928789-141928839	HIPEpiC	eye:	n/a
2	chr3:141867862-141867912	MCF-7	breast:	n/a
3	chr3:141944620-141944670	HL-60	blood:	n/a
4	chr3:141944344-141944394	HEEpiC	esophagus:	n/a
5	chr3:141941279-141941329	HCT-116	colon:	n/a
6	chr3:141928789-141928839	HIPEpiC	eye:	n/a
7	chr3:141867862-141867912	MCF-7	breast:	n/a
8	chr3:141944620-141944670	HL-60	blood:	n/a
9	chr3:141944344-141944394	HEEpiC	esophagus:	n/a
10	chr3:141941279-141941329	HCT-116	colon:	n/a
11	chr3:141943895-141943945	MCF-7	breast:	n/a
12	chr3:141944620-141944670	HRPEpiC	eye:	n/a
13	chr3:141944519-141944569	GM12892	blood:	n/a
14	chr3:141941279-141941329	AG04450	lung:	fetal
15	chr3:141944318-141944368	GM06990	blood:	n/a
16	chr3:141871386-141871436	GM19239	blood:	n/a
17	chr3:142027066-142027116	HepG2	liver:	n/a
18	chr3:141944620-141944670	AG09319	gingival:	n/a
19	chr3:141877942-141877992	HCF	heart:	n/a
20	chr3:141941279-141941329	A549	lung:	n/a
21	chr3:141945790-141945840	PrEC	prostate:	n/a
22	chr3:141943895-141943945	SAEC	small airway:	n/a
23	chr3:141868997-141869047	ECC-1	luminal epithelium:	n/a
24	chr3:142027066-142027116	HCF	heart:	n/a
25	chr3:141944300-141944350	NHBE	bronchial:	n/a
26	chr3:141867994-141868044	HUVEC	blood vessel:	n/a
27	chr3:141867994-141868044	AG04450	lung:	fetal
28	chr3:141944318-141944368	GM12878	blood:	n/a
29	chr3:141944344-141944394	HAEpiC	amniotic membrane:	n/a
30	chr3:141868997-141869047	NH-A	brain:	n/a
31	chr3:141941279-141941329	HCF	heart:	n/a
32	chr3:141945703-141945753	LNCaP	prostate:	n/a
33	chr3:141928789-141928839	SAEC	small airway:	n/a
34	chr3:141941279-141941329	AG09309	skin:	n/a
35	chr3:141928789-141928839	HEEpiC	esophagus:	n/a
36	chr3:141945703-141945753	BJ	skin:	n/a
37	chr3:141945703-141945753	GM12878	blood:	n/a
38	chr3:141943895-141943945	GM12878	blood:	n/a
39	chr3:141868997-141869047	HIPEpiC	eye:	n/a
40	chr3:141945790-141945840	HRE	kidney:	n/a
41	chr3:141868459-141868509	NHDF-neo	bronchial:	n/a
42	chr3:141868459-141868509	HMEC	breast:	n/a
43	chr3:141868612-141868662	MCF-7	breast:	n/a
44	chr3:141867862-141867912	HRCEpiC	kidney:	n/a
45	chr3:141944318-141944368	SAEC	small airway:	n/a
46	chr3:141877942-141877992	NT2-D1	testis:	n/a
47	chr3:141868459-141868509	HRCEpiC	kidney:	n/a
48	chr3:142027066-142027116	GM06990	blood:	n/a
49	chr3:141944318-141944368	BE2_C	brain:	n/a
50	chr3:141944344-141944394	AG09309	skin:	n/a

(count:149 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr3:141939985..141942934-chr3:141962121..141964269,2	K562	blood:
2	chr3:141899184..141899896-chr3:141998534..141999076,2	MCF-7	breast:
3	chr3:142061779..142063304-chr3:142065930..142068810,2	K562	blood:
4	chr3:141927414..141929752-chr3:141932597..141934385,2	MCF-7	breast:
5	chr17:80184285..80186683-chr3:141942385..141945027,2	MCF-7	breast:
6	chr3:141921447..141923041-chr3:141938532..141940338,2	K562	blood:
7	chr3:141888823..141891624-chr3:141893774..141896590,3	K562	blood:
8	chr3:141919625..141921887-chr3:141933849..141936243,2	K562	blood:
9	chr3:141831489..141833335-chr3:141922195..141926170,3	K562	blood:
10	chr3:141866471..141869350-chr3:141942355..141944493,2	K562	blood:
11	chr3:141921447..141923041-chr3:141938532..141940338,2	K562	blood:
12	chr3:141866424..141868170-chr3:141875148..141877149,2	MCF-7	breast:
13	chr3:141929745..141931253-chr3:141941462..141943511,2	MCF-7	breast:
14	chr3:141918898..141921887-chr3:141933656..141936243,2	K562	blood:
15	chr3:141839697..141841748-chr3:141844157..141846456,2	K562	blood:
16	chr3:141844721..141845463-chr3:141945183..141945790,2	MCF-7	breast:
17	chr3:141844885..141845509-chr3:141998474..141999186,2	MCF-7	breast:
18	chr3:142031696..142033287-chr3:142037661..142039925,2	MCF-7	breast:
19	chr3:142028519..142033203-chr3:142033786..142039324,7	K562	blood:
20	chr3:141456676..141459122-chr3:141866884..141869547,2	MCF-7	breast:
21	chr3:142031696..142033287-chr3:142037661..142039925,2	MCF-7	breast:
22	chr3:141869138..141873341-chr3:141874948..141878227,4	MCF-7	breast:
23	chr3:141942954..141945885-chr3:141988032..141991755,3	MCF-7	breast:
24	chr3:141874750..141877739-chr3:141886968..141889204,2	K562	blood:
25	chr19:13958223..13958787-chr3:141867467..141868136,2	Hela-S3	cervix:
26	chr3:141873069..141875142-chr3:141877650..141879337,2	K562	blood:
27	chr3:141831489..141833335-chr3:141922195..141926170,3	K562	blood:
28	chr17:62222919..62223709-chr3:141944062..141944934,2	HCT-116	colon:
29	chr3:141998539..142000204-chr3:142002540..142004917,2	K562	blood:
30	chr3:142077588..142080075-chr3:142081701..142083765,2	K562	blood:
31	chr3:141899184..141899896-chr3:141998534..141999076,2	MCF-7	breast:
32	chr3:141928249..141931424-chr3:141932973..141936618,4	K562	blood:
33	chr3:141866276..141868412-chr3:141942932..141945800,2	MCF-7	breast:
34	chr3:141927414..141929752-chr3:141932597..141934385,2	MCF-7	breast:
35	chr3:142047932..142050372-chr3:142051605..142055072,3	K562	blood:
36	chr3:141939985..141942934-chr3:141962121..141964269,2	K562	blood:
37	chr3:141986894..141989145-chr3:141996424..141998046,2	K562	blood:
38	chr3:141924115..141926296-chr3:141927657..141929893,2	K562	blood:
39	chr3:141944032..141945017-chr8:143808717..143809376,2	Hela-S3	cervix:
40	chr3:141930773..141933744-chr3:141940549..141942064,2	MCF-7	breast:
41	chr3:142071094..142074933-chr3:142076608..142079513,3	MCF-7	breast:
42	chr3:141941642..141944817-chr3:141944838..141947150,3	K562	blood:
43	chr3:141739542..141742444-chr3:142003603..142005533,2	K562	blood:
44	chr3:141919625..141921887-chr3:141933849..141936243,2	K562	blood:
45	chr3:141929745..141931253-chr3:141941462..141943511,2	MCF-7	breast:
46	chr3:141845395..141847742-chr3:141867833..141869425,2	MCF-7	breast:
47	chr3:141918846..141920526-chr3:141922656..141925151,2	K562	blood:
48	chr3:141681241..141682037-chr3:141894141..141895360,3	MCF-7	breast:
49	chr3:141942905..141947103-chr3:141949028..141953369,8	MCF-7	breast:
50	chr3:141916087..141917951-chr3:141939342..141941586,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TFDP2-7	chr3:141876369-141880820	ENSG00000272565.1

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	GK5	hsa-miR-340-5p	chr3:141878164-141878157
2	XRN1	hsa-miR-10a-5p	chr3:142029586-142029608
3	XRN1	hsa-let-7b-5p	chr3:142030132-142030126
4	XRN1	hsa-miR-335-5p	chr3:142025482-142025506
5	XRN1	hsa-miR-10a-5p	chr3:142029592-142029585
6	GK5	hsa-miR-124-3p	chr3:141883855-141883849

Variant related genes	Relation type
GK5	TF binding region
XRN1	TF binding region
RNU6-425P	TF binding region
ENSG00000272565	TF binding region
TFDP2	TF binding region
GK5	CpG island
XRN1	CpG island
RNU6-425P	CpG island
ENSG00000272565	CpG island
TFDP2	CpG island
ENSG00000114126	chromatin interactions
ENSG00000175054	chromatin interactions
ENSG00000266402	chromatin interactions
ENSG00000202444	chromatin interactions
ENSG00000125968	chromatin interactions
ENSG00000160183	chromatin interactions
ENSG00000175066	chromatin interactions
ENSG00000114125	chromatin interactions
ENSG00000113387	chromatin interactions
ENSG00000253806	chromatin interactions
ENSG00000184260	chromatin interactions
ENSG00000130193	chromatin interactions
ENSG00000162636	chromatin interactions
ENSG00000141526	chromatin interactions
ENSG00000206604	chromatin interactions
ENSG00000122545	chromatin interactions
ENSG00000272565	chromatin interactions
ENSG00000199753	chromatin interactions
ENSG00000228878	chromatin interactions
ENSG00000184678	chromatin interactions
ENSG00000114127	chromatin interactions

Extended variants
information (count: 7926 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:7926 , 50 per page) page: 1 2 3 4 5 6 7 ... 159

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571613805	chr3:141831950-141831951	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs377485902	chr3:141832019-141832020	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs114318048	chr3:141832025-141832026	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs186768647	chr3:141832034-141832035	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs569781215	chr3:141832044-141832045	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs142413325	chr3:141832095-141832096	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs370508711	chr3:141832096-141832097	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs372838122	chr3:141832126-141832127	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs141773232	chr3:141832132-141832133	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs573932744	chr3:141832204-141832205	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs190440199	chr3:141832288-141832289	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs111837301	chr3:141832293-141832294	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs530717596	chr3:141832302-141832303	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs112686985	chr3:141832364-141832365	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs550421338	chr3:141832402-141832403	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs577549361	chr3:141832468-141832469	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs544803565	chr3:141832488-141832489	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs182495872	chr3:141832492-141832493	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs570572847	chr3:141832493-141832494	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs73233890	chr3:141832500-141832501	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs542772257	chr3:141832553-141832554	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs377012509	chr3:141832638-141832639	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs528807102	chr3:141832639-141832640	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs546407818	chr3:141832659-141832660	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs73233891	chr3:141832662-141832663	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs73233892	chr3:141832683-141832684	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs139650318	chr3:141832733-141832734	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs550819984	chr3:141832747-141832748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs374763071	chr3:141832781-141832782	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs569341910	chr3:141832784-141832785	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs530736525	chr3:141832834-141832835	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs368246535	chr3:141832839-141832840	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs567457036	chr3:141832857-141832858	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs187534841	chr3:141832875-141832876	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs193038960	chr3:141832876-141832877	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs571174999	chr3:141832879-141832880	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs62284565	chr3:141832900-141832901	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs556788329	chr3:141832929-141832930	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs62284572	chr3:141832981-141832982	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs542311892	chr3:141832985-141832986	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs113407286	chr3:141832986-141832987	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs397964940	chr3:141833019-141833020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs57535573	chr3:141833053-141833054	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs540600233	chr3:141833120-141833121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565547091	chr3:141833148-141833149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532420337	chr3:141833160-141833161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544556398	chr3:141833175-141833176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs566022795	chr3:141833205-141833206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs577394221	chr3:141833277-141833278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs13322825	chr3:141833320-141833321	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:59)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Lung cancer	16740712	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Cancer	21129771	CNVD
Ovarian cancer	23621864	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Congenital anomalies of the kidney and urinary tract	20605837	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:4760 , 50 per page) page: 1 2 3 4 5 6 7 ... 96

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141795400-141835800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:141818200-141835800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:141823600-141832000	Enhancers	Dnd41	blood
4	chr3:141826800-141832400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:141827800-141834600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:141829000-141835200	Weak transcription	Thymus	Thymus
7	chr3:141830800-141832200	Weak transcription	Placenta	Placenta
8	chr3:141830800-141835400	Weak transcription	HepG2	liver
9	chr3:141831200-141832200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:141831600-141833000	ZNF genes & repeats	Fetal Thymus	thymus
11	chr3:141832000-141834800	Weak transcription	Dnd41	blood
12	chr3:141832200-141832800	Enhancers	Placenta	Placenta
13	chr3:141832200-141833000	Strong transcription	Fetal Intestine Small	intestine
14	chr3:141832800-141835000	Weak transcription	Placenta	Placenta
15	chr3:141833000-141834800	Weak transcription	Fetal Thymus	thymus
16	chr3:141833000-141837800	Weak transcription	Fetal Intestine Small	intestine
17	chr3:141834200-141836400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr3:141834400-141835400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:141834600-141835400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:141834600-141836400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:141834600-141837200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:141834600-141838200	Enhancers	Adipose Nuclei	Adipose
23	chr3:141834800-141835400	Genic enhancers	Fetal Thymus	thymus
24	chr3:141834800-141836600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:141834800-141841600	Enhancers	Dnd41	blood
26	chr3:141835000-141835400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:141835000-141836600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:141835000-141838800	Enhancers	Placenta	Placenta
29	chr3:141835200-141835400	Genic enhancers	Thymus	Thymus
30	chr3:141835200-141836400	Enhancers	Primary hematopoietic stem cells	blood
31	chr3:141835400-141835800	Enhancers	Hela-S3	cervix
32	chr3:141835400-141836600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr3:141835400-141837200	Enhancers	HepG2	liver
34	chr3:141835400-141837800	Enhancers	Fetal Thymus	thymus
35	chr3:141835400-141837800	Enhancers	Thymus	Thymus
36	chr3:141835800-141836000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:141835800-141836000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:141835800-141836000	Weak transcription	Hela-S3	cervix
39	chr3:141835800-141836200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:141835800-141836400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr3:141835800-141836600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:141836000-141836400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:141836000-141836400	Enhancers	A549	lung
44	chr3:141836000-141836400	Enhancers	Hela-S3	cervix
45	chr3:141836000-141836600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:141836000-141837200	Enhancers	Stomach Mucosa	stomach
47	chr3:141836200-141836400	Enhancers	Primary T cells from cord blood	blood
48	chr3:141836200-141836600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr3:141836200-141836600	Enhancers	Brain Germinal Matrix	brain
50	chr3:141836200-141836600	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links