Variant report

Variant	nsv536890
Chromosome Location	chr3:195789462-195919077
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4556)
CpG islands
(count:2569)
Chromatin interactive
region (count:307)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4556 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:195837295-195837529	K562	blood:	n/a	n/a
2	ARID3A	chr3:195835156-195835474	K562	blood:	n/a	n/a
3	ARID3A	chr3:195853821-195854737	K562	blood:	n/a	n/a
4	ARID3A	chr3:195872724-195872995	K562	blood:	n/a	n/a
5	ARID3A	chr3:195849012-195849260	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:195874788-195875071	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:195848756-195849453	K562	blood:	n/a	n/a
8	ARID3A	chr3:195807447-195808294	K562	blood:	n/a	n/a
9	ARID3A	chr3:195820274-195820429	K562	blood:	n/a	n/a
10	ARID3A	chr3:195906289-195906522	K562	blood:	n/a	n/a
11	ARID3A	chr3:195862993-195862997	HepG2	liver:	n/a	n/a
12	ARID3A	chr3:195898904-195899274	HepG2	liver:	n/a	n/a
13	ARID3A	chr3:195867000-195867390	K562	blood:	n/a	n/a
14	ARID3A	chr3:195800212-195800450	HepG2	liver:	n/a	n/a
15	ARID3A	chr3:195808790-195809833	HepG2	liver:	n/a	n/a
16	ARID3A	chr3:195870111-195870710	K562	blood:	n/a	n/a
17	ARID3A	chr3:195805816-195806158	K562	blood:	n/a	n/a
18	ARID3A	chr3:195808564-195809464	K562	blood:	n/a	n/a
19	ARID3A	chr3:195803724-195803738	K562	blood:	n/a	n/a
20	ARID3A	chr3:195908711-195909109	K562	blood:	n/a	n/a
21	ARID3A	chr3:195800184-195800338	K562	blood:	n/a	n/a
22	ATF1	chr3:195853858-195854746	K562	blood:	n/a	n/a
23	ATF1	chr3:195808777-195809192	K562	blood:	n/a	n/a
24	ATF1	chr3:195805826-195806128	K562	blood:	n/a	n/a
25	ATF1	chr3:195872777-195873075	K562	blood:	n/a	n/a
26	ATF1	chr3:195807402-195807680	K562	blood:	n/a	n/a
27	ATF1	chr3:195837250-195837656	K562	blood:	n/a	n/a
28	ATF1	chr3:195908745-195909160	K562	blood:	n/a	n/a
29	ATF2	chr3:195837331-195837634	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF2	chr3:195838796-195839363	GM12878	blood:	n/a	n/a
31	ATF2	chr3:195913609-195914179	GM12878	blood:	n/a	n/a
32	ATF2	chr3:195908514-195909189	GM12878	blood:	n/a	n/a
33	ATF2	chr3:195905963-195907220	GM12878	blood:	n/a	n/a
34	ATF2	chr3:195808611-195809440	GM12878	blood:	n/a	n/a
35	ATF2	chr3:195849883-195850361	GM12878	blood:	n/a	n/a
36	ATF2	chr3:195823085-195823728	GM12878	blood:	n/a	n/a
37	ATF2	chr3:195918896-195919717	GM12878	blood:	n/a	n/a
38	ATF2	chr3:195842457-195843044	GM12878	blood:	n/a	n/a
39	ATF2	chr3:195844508-195845108	GM12878	blood:	n/a	n/a
40	ATF2	chr3:195823076-195823804	GM12878	blood:	n/a	n/a
41	ATF2	chr3:195808792-195809201	H1-hESC	embryonic stem cell:	n/a	n/a
42	ATF2	chr3:195886598-195887269	GM12878	blood:	n/a	n/a
43	ATF2	chr3:195842225-195843112	GM12878	blood:	n/a	n/a
44	ATF2	chr3:195913315-195914251	GM12878	blood:	n/a	n/a
45	ATF2	chr3:195808685-195809494	GM12878	blood:	n/a	n/a
46	ATF2	chr3:195905969-195907085	GM12878	blood:	n/a	n/a
47	ATF2	chr3:195808651-195809188	H1-hESC	embryonic stem cell:	n/a	n/a
48	ATF2	chr3:195918798-195920402	GM12878	blood:	n/a	n/a
49	ATF2	chr3:195808332-195808585	GM12878	blood:	n/a	n/a
50	ATF2	chr3:195910195-195910849	GM12878	blood:	n/a	n/a

(count:2569 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:195857857-195857907	HepG2	liver:	n/a
2	chr3:195914113-195914163	HMEC	breast:	n/a
3	chr3:195855438-195855488	GM06990	blood:	n/a
4	chr3:195897833-195897883	GM12891	blood:	n/a
5	chr3:195808345-195808395	CMK	blood:	n/a
6	chr3:195808353-195808403	NH-A	brain:	n/a
7	chr3:195863402-195863452	HCPEpiC	choroid plexus:	n/a
8	chr3:195857857-195857907	HepG2	liver:	n/a
9	chr3:195914113-195914163	HMEC	breast:	n/a
10	chr3:195855438-195855488	GM06990	blood:	n/a
11	chr3:195897833-195897883	GM12891	blood:	n/a
12	chr3:195808345-195808395	CMK	blood:	n/a
13	chr3:195808353-195808403	NH-A	brain:	n/a
14	chr3:195863402-195863452	HCPEpiC	choroid plexus:	n/a
15	chr3:195870249-195870299	HEK293	kidney:	embryo
16	chr3:195805948-195805998	AG04449	skin:	fetal
17	chr3:195812701-195812751	SK-N-SH_RA	brain:	n/a
18	chr3:195809355-195809405	K562	blood:	n/a
19	chr3:195870249-195870299	HRCEpiC	kidney:	n/a
20	chr3:195855438-195855488	BJ	skin:	n/a
21	chr3:195857635-195857685	U87	brain:	n/a
22	chr3:195849513-195849563	AG09319	gingival:	n/a
23	chr3:195857635-195857685	HMEC	breast:	n/a
24	chr3:195906436-195906486	LNCaP	prostate:	n/a
25	chr3:195868640-195868690	NHBE	bronchial:	n/a
26	chr3:195812701-195812751	MCF10A-Er-Src	breast:	n/a
27	chr3:195914092-195914142	NH-A	brain:	n/a
28	chr3:195808602-195808652	HRPEpiC	eye:	n/a
29	chr3:195808879-195808929	ProgFib	skin:	n/a
30	chr3:195907058-195907108	SAEC	small airway:	n/a
31	chr3:195809251-195809301	SAEC	small airway:	n/a
32	chr3:195808986-195809036	HAEpiC	amniotic membrane:	n/a
33	chr3:195857635-195857685	HepG2	liver:	n/a
34	chr3:195849011-195849061	Caco-2	colon:	n/a
35	chr3:195812701-195812751	NT2-D1	testis:	n/a
36	chr3:195855400-195855450	SK-N-MC	brain:	n/a
37	chr3:195849674-195849724	PANC-1	pancreas:	n/a
38	chr3:195870092-195870142	AoSMC	blood vessel:	n/a
39	chr3:195849513-195849563	ECC-1	luminal epithelium:	n/a
40	chr3:195849368-195849418	MCF10A-Er-Src	breast:	n/a
41	chr3:195855438-195855488	HCF	heart:	n/a
42	chr3:195886898-195886948	HPAEpiC	pulmonary alveolar:	n/a
43	chr3:195855400-195855450	PrEC	prostate:	n/a
44	chr3:195870009-195870059	K562	blood:	n/a
45	chr3:195863402-195863452	Hepatocyte	liver:	n/a
46	chr3:195870009-195870059	HMEC	breast:	n/a
47	chr3:195849513-195849563	SK-N-SH_RA	brain:	n/a
48	chr3:195809251-195809301	MCF-7	breast:	n/a
49	chr3:195812701-195812751	CMK	blood:	n/a
50	chr3:195914092-195914142	HL-60	blood:	n/a

(count:307 , 50 per page) page: 1 2 3 4 5 6 7

No.	Distal block	Cell Line	Cell type
1	chr3:195870173..195874427-chr3:195908802..195912343,5	K562	blood:
2	chr3:195793504..195812987-chr3:195901613..195938073,113	K562	blood:
3	chr3:195808392..195810368-chr3:195874737..195877839,4	MCF-7	breast:
4	chr3:195808310..195809179-chr3:195876922..195877750,2	MCF-7	breast:
5	chr3:195794950..195798022-chr3:195807553..195809899,4	MCF-7	breast:
6	chr3:195800491..195804775-chr3:195913481..195918135,5	MCF-7	breast:
7	chr3:195821883..195824753-chr3:195869631..195872398,2	K562	blood:
8	chr3:195802604..195804147-chr3:195868786..195870734,2	K562	blood:
9	chr3:195815828..195818697-chr3:195856624..195859807,3	K562	blood:
10	chr3:195823642..195825667-chr3:195890214..195892220,2	K562	blood:
11	chr3:195806985..195811297-chr3:195832492..195837081,8	MCF-7	breast:
12	chr3:195817146..195819137-chr3:195820738..195822246,2	K562	blood:
13	chr3:195853800..195856290-chr3:195863530..195866290,3	K562	blood:
14	chr3:195840398..195842445-chr3:195874732..195876479,2	K562	blood:
15	chr3:195854415..195856195-chr3:195888995..195891354,2	K562	blood:
16	chr3:195858633..195860716-chr3:195871946..195874804,2	K562	blood:
17	chr3:195806752..195810300-chr3:195885348..195891708,10	K562	blood:
18	chr3:195805984..195810331-chr3:195892473..195900125,13	K562	blood:
19	chr3:195854603..195857572-chr3:195905057..195907261,2	K562	blood:
20	chr3:195806967..195809789-chr3:195888733..195890950,3	MCF-7	breast:
21	chr3:195840247..195843702-chr3:195870905..195872821,3	K562	blood:
22	chr3:195806122..195809121-chr3:195839075..195841557,3	MCF-7	breast:
23	chr3:195791142..195792773-chr3:195808257..195810769,2	MCF-7	breast:
24	chr3:195804970..195807492-chr3:195930599..195932477,2	K562	blood:
25	chr3:195886180..195890208-chr3:195892653..195895699,4	K562	blood:
26	chr3:195807808..195810201-chr5:170814648..170817233,2	MCF-7	breast:
27	chr3:195853800..195856290-chr3:195863530..195866290,3	K562	blood:
28	chr3:195800491..195804775-chr3:195913481..195918135,5	MCF-7	breast:
29	chr3:195895053..195896578-chr6:7190290..7192717,2	K562	blood:
30	chr3:195838814..195842611-chr3:195858740..195860839,3	K562	blood:
31	chr3:195845862..195855651-chr3:195867758..195873687,15	K562	blood:
32	chr3:195865618..195868542-chr3:195904431..195907406,2	MCF-7	breast:
33	chr3:195795171..195797098-chr3:195906835..195910402,3	K562	blood:
34	chr3:195781940..195789641-chr3:195805045..195810311,11	K562	blood:
35	chr3:195840556..195842327-chr3:195850355..195852672,2	K562	blood:
36	chr3:195808556..195809153-chr8:102217676..102218553,2	Hela-S3	cervix:
37	chr3:195815828..195818697-chr3:195856624..195859807,3	K562	blood:
38	chr19:55895702..55896469-chr3:195808853..195809374,2	HCT-116	colon:
39	chr3:195857522..195859358-chr3:195869364..195872051,2	MCF-7	breast:
40	chr3:195808781..195809452-chr6:33239324..33239934,2	HCT-116	colon:
41	chr3:195808089..195808909-chr7:26239810..26240342,2	Hela-S3	cervix:
42	chr3:195845503..195851425-chr3:195859330..195864075,7	K562	blood:
43	chr3:195876196..195878053-chr3:195879575..195881077,2	K562	blood:
44	chr3:195867258..195871811-chr3:195887693..195891038,5	K562	blood:
45	chr3:195839096..195841141-chr3:195842959..195844948,2	K562	blood:
46	chr3:195862933..195865516-chr3:195916637..195919200,2	MCF-7	breast:
47	chr3:195820003..195822218-chr3:195827394..195829467,2	MCF-7	breast:
48	chr3:195807091..195810537-chr3:195867675..195869638,3	MCF-7	breast:
49	chr3:195840556..195842327-chr3:195850355..195852672,2	K562	blood:
50	chr3:195803889..195810632-chr3:195834192..195839028,11	K562	blood:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC069257.9.1-2	chr3:195871048-195871248	NONHSAT094297
2	lnc-AC069257.9.1-8	chr3:195911292-195911606	l_2563_chr3:195910484-195920505_testes
3	lnc-AC069257.9.1-2	chr3:195870150-195870193	XLOC_003002
4	lnc-AC069257.9.1-2	chr3:195870777-195871248	ENSG00000224652
5	lnc-AC069257.9.1-2	chr3:195886771-195886841	XLOC_003002
6	lnc-AC069257.9.1-2	chr3:195886771-195887593	NONHSAT094297
7	lnc-AC069257.9.1-2	chr3:195886771-195886896	XLOC_003002
8	lnc-AC069257.9.1-2	chr3:195869519-195869871	NONHSAT094297
9	lnc-AC069257.9.1-10	chr3:195791492-195791644	ucscGeneNc_uc003fug_2
10	lnc-AC069257.9.1-8	chr3:195910485-195911165	l_2563_chr3:195910484-195920505_testes
11	lnc-AC069257.9.1-10	chr3:195791873-195792276	ucscGeneNc_uc003fug_2
12	lnc-AC069257.9.1-2	chr3:195869626-195870280	XLOC_003002
13	lnc-AC069257.9.1-2	chr3:195886771-195886851	XLOC_003002
14	lnc-AC069257.9.1-8	chr3:195916991-195917200	l_2563_chr3:195910484-195920505_testes
15	lnc-AC069257.9.1-2	chr3:195871048-195871248	XLOC_003002
16	lnc-AC069257.9.1-2	chr3:195871048-195871249	XLOC_003002
17	lnc-AC069257.9.1-10	chr3:195791088-195791160	ucscGeneNc_uc003fug_2
18	lnc-AC069257.9.1-2	chr3:195869507-195869871	ENSG00000224652
19	lnc-AC069257.9.1-9	chr3:195904190-195904502	NONHSAT094301
20	lnc-AC069257.9.1-2	chr3:195869671-195869871	XLOC_003002
21	lnc-AC069257.9.1-2	chr3:195870915-195871248	XLOC_003002
22	lnc-AC069257.9.1-2	chr3:195886771-195887761	ENSG00000224652
23	lnc-AC069257.9.1-2	chr3:195871048-195871248	XLOC_003002
24	lnc-AC069257.9.1-2	chr3:195869677-195869871	XLOC_003002
25	lnc-AC069257.9.1-2	chr3:195870777-195870822	XLOC_003002

No data

Variant related genes	Relation type
LINC00885	TF binding region
TFRC	TF binding region
RNU7-18P	TF binding region
LINC00885	CpG island
TFRC	CpG island
RNU7-18P	CpG island
ENSG00000249492	chromatin interactions
ENSG00000142541	chromatin interactions
ENSG00000224652	chromatin interactions
ENSG00000145982	chromatin interactions
ENSG00000236287	chromatin interactions
ENSG00000163958	chromatin interactions
ENSG00000231500	chromatin interactions
ENSG00000156650	chromatin interactions
ENSG00000102699	chromatin interactions
ENSG00000233493	chromatin interactions
ENSG00000130513	chromatin interactions
ENSG00000270022	chromatin interactions
ENSG00000145107	chromatin interactions
ENSG00000164896	chromatin interactions
ENSG00000061938	chromatin interactions
ENSG00000155975	chromatin interactions
ENSG00000252174	chromatin interactions
ENSG00000137764	chromatin interactions
ENSG00000270964	chromatin interactions
ENSG00000054967	chromatin interactions
ENSG00000213859	chromatin interactions
ENSG00000156599	chromatin interactions
ENSG00000163961	chromatin interactions
ENSG00000181929	chromatin interactions
ENSG00000072274	chromatin interactions
ENSG00000164151	chromatin interactions
ENSG00000222335	chromatin interactions
ENSG00000156261	chromatin interactions
ENSG00000241685	chromatin interactions
ENSG00000120963	chromatin interactions
ENSG00000214113	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000163960	chromatin interactions
ENSG00000151881	chromatin interactions
ENSG00000198791	chromatin interactions
ENSG00000035403	chromatin interactions
ENSG00000273331	chromatin interactions
ENSG00000163959	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000223501	chromatin interactions
ENSG00000181163	chromatin interactions
YKT6	miRNA target sites
NCDN	miRNA target sites
SC4MOL	miRNA target sites
AKT3	miRNA target sites
SLC35D2	miRNA target sites
WDFY3	miRNA target sites
WDR26	miRNA target sites
WLS	miRNA target sites

Extended variants
information (count: 6034 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:6034 , 50 per page) page: 1 2 3 4 5 6 7 ... 121

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199951786	chr3:195789515-195789516	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs568352545	chr3:195789523-195789524	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs565955322	chr3:195789531-195789532	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs374751038	chr3:195789540-195789541	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs139383041	chr3:195789592-195789593	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs551371565	chr3:195789664-195789665	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs41297459	chr3:195789691-195789692	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs371692190	chr3:195789704-195789705	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs2239640	chr3:195789708-195789709	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs370019678	chr3:195789749-195789750	Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs555459517	chr3:195789797-195789798	Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs200005741	chr3:195789806-195789807	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs372685302	chr3:195789807-195789808	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs535214024	chr3:195789840-195789841	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs368666652	chr3:195789841-195789842	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs553426876	chr3:195789908-195789909	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs41297457	chr3:195789911-195789912	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs926149	chr3:195789915-195789916	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs41297455	chr3:195789932-195789933	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs141562607	chr3:195789933-195789934	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs41297453	chr3:195789959-195789960	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs41295897	chr3:195789981-195789982	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs574871232	chr3:195790022-195790023	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs111479119	chr3:195790024-195790025	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs183366702	chr3:195790086-195790087	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs73893123	chr3:195790096-195790097	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs41295895	chr3:195790147-195790148	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs41295893	chr3:195790177-195790178	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs574926464	chr3:195790178-195790179	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs559413214	chr3:195790211-195790212	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs41295891	chr3:195790228-195790229	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs566563782	chr3:195790290-195790291	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs2300780	chr3:195790291-195790292	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs149972719	chr3:195790311-195790312	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs41295889	chr3:195790335-195790336	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs530518212	chr3:195790402-195790403	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs549142130	chr3:195790442-195790443	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs567342227	chr3:195790471-195790472	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs534937375	chr3:195790472-195790473	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs41295887	chr3:195790529-195790530	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs144287297	chr3:195790583-195790584	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs140061117	chr3:195790645-195790646	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs397897348	chr3:195790647-195790648	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs542257234	chr3:195790658-195790659	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs557187134	chr3:195790688-195790689	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs2300779	chr3:195790691-195790692	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs146482050	chr3:195790712-195790713	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs554798500	chr3:195790719-195790720	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs187885105	chr3:195790732-195790733	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs2300778	chr3:195790737-195790738	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
Cancer	16751803	CNVD
abnormal development	18461090	CNVD
Autism	19653912	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
Prostate cancer	18632612	CNVD
Cervical cancer	21062161	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Austim spectrum disorder	21302340	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	16397240	CNVD
Epilepsy	20736978	CNVD
Mental retardation	20736978	CNVD
speech impairment	20736978	CNVD
Intracranial aneurysm	16715129	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mental retardation	17124404	CNVD
Congenital anomalies of the kidney and urinary tract	20299530	CNVD
Developmental delay	21147756	CNVD
Breast cancer	21509527	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	16760732	CNVD
Schizophrenia	22118685	CNVD
Schizophrenia	22958593	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	20970697	CNVD
Mental retardation	19951919	CNVD
Autism	20970697	CNVD
Developmental delay	18471269	CNVD
Intellectual disability	22045946	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Uveal melanoma	20484589	CNVD
3q29 microdeletion syndrome	20500065	CNVD
Biliary cancer	20453639	CNVD
3q29 microdeletion syndrome	22283845	CNVD
3q29 microdeletion syndrome	21626679	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3435 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195771400-195804000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:195773000-195802000	Strong transcription	Dnd41	blood
3	chr3:195773200-195805200	Strong transcription	Fetal Thymus	thymus
4	chr3:195773400-195800400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:195773600-195790200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:195774200-195791400	Strong transcription	Primary B cells from cord blood	blood
7	chr3:195774200-195800200	Strong transcription	Placenta	Placenta
8	chr3:195774200-195803800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:195774200-195804800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:195774400-195800200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:195774400-195803800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr3:195774600-195789600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:195774600-195803800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:195774600-195805400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:195774800-195803000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:195774800-195803400	Strong transcription	Left Ventricle	heart
17	chr3:195775000-195796600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:195775000-195798800	Strong transcription	Thymus	Thymus
19	chr3:195775000-195803200	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:195775000-195806600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:195775200-195796600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:195775200-195802800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:195775200-195804000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:195775200-195804400	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:195775400-195797600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr3:195775400-195800400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:195775400-195802600	Strong transcription	Primary T cells from cord blood	blood
28	chr3:195775400-195802800	Strong transcription	Fetal Brain Female	brain
29	chr3:195775400-195803400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr3:195775400-195803800	Strong transcription	Primary hematopoietic stem cells	blood
31	chr3:195775400-195804000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:195775400-195804000	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr3:195775600-195789600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:195775600-195789600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:195775600-195789600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:195775600-195790200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:195775600-195791000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:195775600-195800200	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:195775600-195802400	Strong transcription	NH-A	brain
40	chr3:195775600-195802800	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:195775600-195803000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:195775600-195803400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:195775600-195804000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:195775800-195791400	Strong transcription	Fetal Lung	lung
45	chr3:195775800-195795600	Strong transcription	GM12878-XiMat	blood
46	chr3:195775800-195803200	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:195775800-195803200	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr3:195775800-195804000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr3:195775800-195804000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr3:195776000-195795000	Strong transcription	Brain Germinal Matrix	brain

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