Variant report

Variant	nsv537451
Chromosome Location	chr4:188086777-188435238
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1110)
CpG islands
(count:1834)
Chromatin interactive
region (count:33)
LncRNA
region (count:47)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1110 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:188172278-188172408	HepG2	liver:	n/a	n/a
2	BACH1	chr4:188129816-188130163	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr4:188413248-188413433	K562	blood:	n/a	chr4:188413338-188413352
4	BACH1	chr4:188129825-188130039	K562	blood:	n/a	n/a
5	BCL3	chr4:188193059-188193371	GM12878	blood:	n/a	n/a
6	BHLHE40	chr4:188343966-188344142	K562	blood:	n/a	n/a
7	BHLHE40	chr4:188162982-188163057	A549	lung:	n/a	n/a
8	CBX3	chr4:188301159-188301792	HCT-116	colon:	n/a	n/a
9	CEBPB	chr4:188254417-188254534	K562	blood:	n/a	n/a
10	CEBPB	chr4:188253393-188253593	HepG2	liver:	n/a	chr4:188253450-188253461
11	CEBPB	chr4:188146558-188146694	K562	blood:	n/a	n/a
12	CEBPB	chr4:188405573-188406437	IMR90	lung:	n/a	chr4:188405878-188405889 chr4:188405683-188405696 chr4:188405685-188405696 chr4:188405877-188405890
13	CEBPB	chr4:188190202-188190454	HepG2	liver:	n/a	n/a
14	CEBPB	chr4:188254340-188254476	A549	lung:	n/a	chr4:188254404-188254415
15	CEBPB	chr4:188152008-188152230	K562	blood:	n/a	chr4:188152090-188152101 chr4:188152090-188152103 chr4:188152092-188152103 chr4:188152092-188152101
16	CEBPB	chr4:188337413-188337766	Hela-S3	cervix:	n/a	chr4:188337610-188337621 chr4:188337669-188337677
17	CEBPB	chr4:188153426-188153626	A549	lung:	n/a	n/a
18	CEBPB	chr4:188151952-188152262	HepG2	liver:	n/a	chr4:188152090-188152101 chr4:188152090-188152103 chr4:188152092-188152103 chr4:188152230-188152243 chr4:188152092-188152101
19	CEBPB	chr4:188148689-188148861	H1-hESC	embryonic stem cell:	n/a	n/a
20	CEBPB	chr4:188213364-188213403	K562	blood:	n/a	n/a
21	CEBPB	chr4:188301254-188301597	HepG2	liver:	n/a	n/a
22	CEBPB	chr4:188223685-188224011	IMR90	lung:	n/a	n/a
23	CEBPB	chr4:188148708-188148996	IMR90	lung:	n/a	n/a
24	CEBPB	chr4:188337488-188337650	K562	blood:	n/a	chr4:188337610-188337621
25	CEBPB	chr4:188184825-188185024	IMR90	lung:	n/a	n/a
26	CEBPB	chr4:188146498-188146805	IMR90	lung:	n/a	n/a
27	CEBPB	chr4:188153348-188153608	IMR90	lung:	n/a	n/a
28	CEBPB	chr4:188317722-188317931	HepG2	liver:	n/a	chr4:188317842-188317853 chr4:188317842-188317855 chr4:188317839-188317856
29	CEBPB	chr4:188158501-188158795	IMR90	lung:	n/a	n/a
30	CEBPB	chr4:188100977-188101137	H1-hESC	embryonic stem cell:	n/a	n/a
31	CEBPB	chr4:188158510-188158761	A549	lung:	n/a	n/a
32	CEBPB	chr4:188317704-188317987	IMR90	lung:	n/a	chr4:188317842-188317853 chr4:188317842-188317855 chr4:188317839-188317856
33	CEBPB	chr4:188157115-188157171	HepG2	liver:	n/a	chr4:188157139-188157150
34	CEBPB	chr4:188263083-188263269	HepG2	liver:	n/a	n/a
35	CEBPB	chr4:188405581-188406417	HepG2	liver:	n/a	chr4:188405878-188405889 chr4:188405683-188405696 chr4:188405685-188405696 chr4:188405877-188405890
36	CEBPB	chr4:188376676-188376735	HepG2	liver:	n/a	chr4:188376676-188376689 chr4:188376676-188376687 chr4:188376678-188376689
37	CEBPB	chr4:188301252-188301594	H1-hESC	embryonic stem cell:	n/a	n/a
38	CEBPB	chr4:188254264-188254489	HepG2	liver:	n/a	chr4:188254404-188254415
39	CEBPB	chr4:188253347-188253499	Hela-S3	cervix:	n/a	chr4:188253450-188253461
40	CEBPB	chr4:188301254-188301599	MCF-7	breast:	n/a	n/a
41	CEBPB	chr4:188295952-188296114	HepG2	liver:	n/a	chr4:188296003-188296014 chr4:188296003-188296016
42	CEBPB	chr4:188399632-188400363	IMR90	lung:	n/a	n/a
43	CEBPB	chr4:188153356-188153615	HepG2	liver:	n/a	n/a
44	CEBPB	chr4:188152011-188152233	IMR90	lung:	n/a	chr4:188152090-188152101 chr4:188152090-188152103 chr4:188152092-188152103 chr4:188152092-188152101
45	CEBPB	chr4:188190130-188190519	IMR90	lung:	n/a	n/a
46	CEBPB	chr4:188405582-188405932	A549	lung:	n/a	chr4:188405878-188405889 chr4:188405683-188405696 chr4:188405685-188405696 chr4:188405877-188405890
47	CEBPB	chr4:188349162-188349196	H1-hESC	embryonic stem cell:	n/a	chr4:188349183-188349194
48	CEBPB	chr4:188167859-188168183	HepG2	liver:	n/a	chr4:188168001-188168012 chr4:188168002-188168013 chr4:188168052-188168065
49	CEBPB	chr4:188183122-188183182	H1-hESC	embryonic stem cell:	n/a	n/a
50	CEBPB	chr4:188309832-188310058	IMR90	lung:	n/a	chr4:188309977-188309986

(count:1834 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:188139877-188139927	AG10803	skin:	n/a
2	chr4:188401038-188401088	PANC-1	pancreas:	n/a
3	chr4:188140222-188140272	HUVEC	blood vessel:	n/a
4	chr4:188256637-188256687	AG09319	gingival:	n/a
5	chr4:188139877-188139927	AG10803	skin:	n/a
6	chr4:188401038-188401088	PANC-1	pancreas:	n/a
7	chr4:188140222-188140272	HUVEC	blood vessel:	n/a
8	chr4:188256637-188256687	AG09319	gingival:	n/a
9	chr4:188391387-188391437	AG09319	gingival:	n/a
10	chr4:188401038-188401088	MCF-7	breast:	n/a
11	chr4:188097967-188098017	GM19239	blood:	n/a
12	chr4:188223108-188223158	NT2-D1	testis:	n/a
13	chr4:188157167-188157217	HMEC	breast:	n/a
14	chr4:188230390-188230440	NH-A	brain:	n/a
15	chr4:188131622-188131672	HCF	heart:	n/a
16	chr4:188104526-188104576	PFSK-1	brain:	n/a
17	chr4:188426278-188426328	HRE	kidney:	n/a
18	chr4:188427966-188428016	SKMC	muscle:	n/a
19	chr4:188131622-188131672	SAEC	small airway:	n/a
20	chr4:188256765-188256815	H1-hESC	embryonic stem cell:	embryo
21	chr4:188398437-188398487	HNPCEpiC	eye:	n/a
22	chr4:188391387-188391437	SK-N-SH_RA	brain:	n/a
23	chr4:188423066-188423116	ProgFib	skin:	n/a
24	chr4:188097683-188097733	SK-N-SH	brain:	n/a
25	chr4:188097967-188098017	HEEpiC	esophagus:	n/a
26	chr4:188097683-188097733	AG09309	skin:	n/a
27	chr4:188104526-188104576	Caco-2	colon:	n/a
28	chr4:188097967-188098017	SAEC	small airway:	n/a
29	chr4:188149410-188149460	BJ	skin:	n/a
30	chr4:188426278-188426328	SAEC	small airway:	n/a
31	chr4:188256637-188256687	AoSMC	blood vessel:	n/a
32	chr4:188391387-188391437	BE2_C	brain:	n/a
33	chr4:188139877-188139927	AG04450	lung:	fetal
34	chr4:188314314-188314364	HCM	heart:	n/a
35	chr4:188426506-188426556	AG09319	gingival:	n/a
36	chr4:188423066-188423116	HRCEpiC	kidney:	n/a
37	chr4:188426278-188426328	BJ	skin:	n/a
38	chr4:188208070-188208120	NT2-D1	testis:	n/a
39	chr4:188223108-188223158	HEK293	kidney:	embryo
40	chr4:188131622-188131672	A549	lung:	n/a
41	chr4:188256765-188256815	A549	lung:	n/a
42	chr4:188208070-188208120	GM12891	blood:	n/a
43	chr4:188149410-188149460	SAEC	small airway:	n/a
44	chr4:188097967-188098017	AG09319	gingival:	n/a
45	chr4:188097683-188097733	HRE	kidney:	n/a
46	chr4:188256637-188256687	HEEpiC	esophagus:	n/a
47	chr4:188426437-188426487	MCF10A-Er-Src	breast:	n/a
48	chr4:188426437-188426487	MCF-7	breast:	n/a
49	chr4:188256637-188256687	SK-N-SH_RA	brain:	n/a
50	chr4:188427966-188428016	NT2-D1	testis:	n/a

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:188077660..188079789-chr4:188085671..188087696,2	K562	blood:
2	chr4:188218935..188220617-chr4:188223273..188225640,2	K562	blood:
3	chr4:188278385..188280812-chr4:188281318..188282901,2	K562	blood:
4	chr4:188426813..188429681-chrX:150150480..150152156,2	MCF-7	breast:
5	chr4:188100330..188101980-chr4:188105667..188107214,2	K562	blood:
6	chr4:188127890..188131303-chr4:188136198..188140053,3	K562	blood:
7	chr4:188177128..188179488-chr4:188187474..188190252,2	MCF-7	breast:
8	chr4:188361387..188363227-chr4:188363317..188365027,2	K562	blood:
9	chr4:188169327..188171194-chr4:188181076..188182965,2	K562	blood:
10	chr4:188278385..188280812-chr4:188281318..188282901,2	K562	blood:
11	chr4:188391078..188391578-chr8:43092429..43092931,2	MCF-7	breast:
12	chr4:188343831..188346613-chr4:188349550..188352474,2	K562	blood:
13	chr4:188100330..188101980-chr4:188105667..188107214,2	K562	blood:
14	chr4:188136808..188139497-chr4:188168223..188169981,2	K562	blood:
15	chr4:188361387..188363227-chr4:188363317..188365027,2	K562	blood:
16	chr4:188424251..188426259-chr4:188431828..188433769,2	MCF-7	breast:
17	chr4:188083083..188085833-chr4:188087348..188090241,2	MCF-7	breast:
18	chr4:188169327..188171194-chr4:188181076..188182965,2	K562	blood:
19	chr4:188360438..188363227-chr4:188363317..188366717,3	K562	blood:
20	chr4:188127890..188130779-chr4:188137377..188140053,2	K562	blood:
21	chr4:188261472..188262979-chr4:188266588..188269425,2	K562	blood:
22	chr4:188379432..188382221-chr4:188385756..188387515,2	K562	blood:
23	chr4:188218935..188220617-chr4:188223273..188225640,2	K562	blood:
24	chr4:187646533..187648100-chr4:188156626..188159035,2	MCF-7	breast:
25	chr4:188343831..188346613-chr4:188349550..188352474,2	K562	blood:
26	chr4:188261472..188262979-chr4:188266588..188269425,2	K562	blood:
27	chr4:188177128..188179488-chr4:188187474..188190252,2	MCF-7	breast:
28	chr4:188379432..188382221-chr4:188385756..188387515,2	K562	blood:
29	chr4:188390078..188391598-chr8:43091410..43092931,3	MCF-7	breast:
30	chr4:188127890..188131303-chr4:188136198..188140053,3	K562	blood:
31	chr4:188127890..188130779-chr4:188137377..188140053,2	K562	blood:
32	chr4:188424251..188426259-chr4:188431828..188433769,2	MCF-7	breast:
33	chr4:188136808..188139497-chr4:188168223..188169981,2	K562	blood:

(count:47 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP42-11	chr4:188419171-188419708	NONHSAT099698
2	lnc-ZFP42-7	chr4:188133499-188133581	NONHSAT099688
3	lnc-ZFP42-7	chr4:188129941-188130201	XLOC_003825
4	lnc-ZFP42-7	chr4:188133530-188133630	XLOC_003825
5	lnc-ZFP42-6	chr4:188291802-188291929	XLOC_003826
6	lnc-ZFP42-12	chr4:188360139-188360290	l_2817_chr4:188360138-188372335_testes
7	lnc-ZFP42-13	chr4:188237423-188237596	NONHSAT099691
8	lnc-ZFP42-4	chr4:188351172-188352018	NONHSAT099695
9	lnc-ZFP42-5	chr4:188334718-188334865	ENSG00000250620
10	lnc-ZFP42-7	chr4:188134283-188134753	NONHSAT099688
11	lnc-ZFP42-7	chr4:188133530-188134139	XLOC_003825
12	lnc-ZFP42-4	chr4:188344049-188344151	XLOC_003828
13	lnc-FAT1-2	chr4:188119427-188119745	XLOC_004216
14	lnc-FAT1-2	chr4:188122781-188123084	XLOC_004216
15	lnc-ZFP42-4	chr4:188343853-188344622	NONHSAT099695
16	lnc-ZFP42-6	chr4:188292838-188293075	XLOC_003826
17	lnc-ZFP42-5	chr4:188334716-188334865	NONHSAT099694
18	lnc-ZFP42-13	chr4:188251486-188251546	NONHSAT099691
19	lnc-ZFP42-12	chr4:188371277-188372335	l_2817_chr4:188360138-188372335_testes
20	lnc-ZFP42-7	chr4:188123217-188123296	XLOC_003825
21	lnc-ZFP42-7	chr4:188123187-188123296	XLOC_003825
22	lnc-ZFP42-6	chr4:188292449-188292580	XLOC_003826
23	lnc-ZFP42-7	chr4:188133984-188134139	NONHSAT099688
24	lnc-ZFP42-7	chr4:188123140-188123296	XLOC_003825
25	lnc-ZFP42-7	chr4:188129941-188130201	XLOC_003825
26	lnc-TRIML2-12	chr4:188364965-188365452	NONHSAT099697
27	lnc-ZFP42-4	chr4:188351216-188351539	XLOC_003828
28	lnc-ZFP42-7	chr4:188133530-188134139	XLOC_003825
29	lnc-TRIML2-12	chr4:188364017-188364135	NONHSAT099697
30	lnc-ZFP42-5	chr4:188329695-188330053	NONHSAT099694
31	lnc-ZFP42-12	chr4:188370524-188371133	l_2817_chr4:188360138-188372335_testes
32	lnc-ZFP42-13	chr4:188252448-188253478	NONHSAT099691
33	lnc-ZFP42-7	chr4:188123145-188123296	XLOC_003825
34	lnc-FAT1-3	chr4:188225237-188225621	XLOC_004217
35	lnc-FAT1-3	chr4:188230336-188230836	XLOC_004217
36	lnc-ZFP42-13	chr4:188228509-188228694	NONHSAT099691
37	lnc-ZFP42-7	chr4:188130341-188130500	XLOC_003825
38	lnc-FAT1-3	chr4:188228260-188228423	XLOC_004217
39	lnc-ZFP42-5	chr4:188336464-188336851	ENSG00000250620
40	lnc-FAT1-3	chr4:188225792-188226855	XLOC_004217
41	lnc-ZFP42-5	chr4:188336464-188337128	NONHSAT099694
42	lnc-ZFP42-7	chr4:188123178-188123296	XLOC_003825
43	lnc-TRIML2-12	chr4:188362831-188363446	NONHSAT099697
44	lnc-ZFP42-7	chr4:188124136-188124768	XLOC_003825
45	lnc-ZFP42-7	chr4:188134283-188135298	XLOC_003825
46	lnc-ZFP42-7	chr4:188134283-188134810	XLOC_003825
47	lnc-ZFP42-11	chr4:188419753-188420210	NONHSAT099698

No data

Variant related genes	Relation type
ENSG00000251643	TF binding region
ENSG00000250620	TF binding region
ENSG00000250042	TF binding region
ENSG00000249747	TF binding region
ENSG00000250658	TF binding region
ENSG00000251643	CpG island
ENSG00000250620	CpG island
ENSG00000250042	CpG island
ENSG00000249747	CpG island
ENSG00000250658	CpG island
ENSG00000083857	chromatin interactions
ENSG00000029993	chromatin interactions
ENSG00000251643	chromatin interactions
UBXN1	miRNA target sites
OSBPL1A	miRNA target sites
ZFYVE26	miRNA target sites
LMNB1	miRNA target sites
ANKRD57	miRNA target sites
CCND1	miRNA target sites

Extended variants
information (count: 11222 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:11222 , 50 per page) page: 1 2 3 4 5 6 7 ... 225

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373799827	chr4:188087400-188087401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs139278951	chr4:188087429-188087430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs72719050	chr4:188087430-188087431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs76334038	chr4:188087434-188087435	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs542679571	chr4:188087468-188087469	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs559963414	chr4:188087473-188087474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs377396815	chr4:188087499-188087500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573469600	chr4:188087501-188087502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370404219	chr4:188087525-188087526	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs1011514	chr4:188087535-188087536	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs79716262	chr4:188087543-188087544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs377444465	chr4:188087594-188087595	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs531161681	chr4:188087628-188087629	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs190488738	chr4:188087637-188087638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs180950885	chr4:188087666-188087667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs184890705	chr4:188087687-188087688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs190136585	chr4:188087693-188087694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs114921257	chr4:188087703-188087704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs146527390	chr4:188087704-188087705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs181322621	chr4:188087755-188087756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs552096095	chr4:188087780-188087781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs568698342	chr4:188087799-188087800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs539696458	chr4:188087824-188087825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs537680827	chr4:188087857-188087858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs371166423	chr4:188087885-188087886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs562141972	chr4:188087892-188087893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567670870	chr4:188087896-188087897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs536608257	chr4:188087907-188087908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs368219869	chr4:188087965-188087966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs553097204	chr4:188087980-188087981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs116460193	chr4:188088000-188088001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs35485256	chr4:188088038-188088039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77912535	chr4:188088085-188088086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs559318781	chr4:188088159-188088160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs575878671	chr4:188088189-188088190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs117120528	chr4:188088197-188088198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs560922179	chr4:188088200-188088201	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529753096	chr4:188088237-188088238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs540369050	chr4:188088258-188088259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs559882493	chr4:188088286-188088287	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs139905818	chr4:188088335-188088336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs552033254	chr4:188088346-188088347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs568837752	chr4:188088353-188088354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs62343534	chr4:188088369-188088370	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs531371310	chr4:188088372-188088373	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs143397460	chr4:188088397-188088398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs11933420	chr4:188088439-188088440	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs76263334	chr4:188088453-188088454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs376670420	chr4:188088456-188088457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs368363391	chr4:188088466-188088467	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
abnormal development	18461090	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16774939	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	17053054	CNVD
Facioscapulohumeral muscular dystrophy	21829175	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	20844748	CNVD
Autism	18414403	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Breast cancer	20409316	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Developmental delay	22127048	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cervical cancer	21063398	CNVD
Oral cancer	21386901	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Autism	20808228	CNVD
Cognitive impairment	21505072	CNVD

Chromatin state (count:901 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:188087400-188087800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:188087800-188088200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:188088200-188088800	Enhancers	Adipose Nuclei	Adipose
4	chr4:188088200-188089200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:188088600-188089000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr4:188088600-188089000	Enhancers	Stomach Mucosa	stomach
7	chr4:188088600-188089200	Enhancers	Fetal Lung	lung
8	chr4:188088600-188089200	Enhancers	Placenta	Placenta
9	chr4:188088800-188092800	Weak transcription	Adipose Nuclei	Adipose
10	chr4:188089000-188089200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:188089000-188089200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr4:188089000-188093200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:188089200-188090800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:188089200-188092800	Weak transcription	Fetal Lung	lung
15	chr4:188089200-188093000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr4:188089200-188093000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:188090800-188091600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:188091200-188091400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:188091400-188091600	Enhancers	Right Atrium	heart
20	chr4:188091400-188091600	Enhancers	Stomach Mucosa	stomach
21	chr4:188091600-188093200	Enhancers	NHLF	lung
22	chr4:188091600-188093600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:188091600-188098800	Weak transcription	Right Atrium	heart
24	chr4:188092400-188092800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:188092400-188093000	Enhancers	NHDF-Ad	bronchial
26	chr4:188092400-188094000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:188092400-188094200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:188092600-188093800	Enhancers	NHEK	skin
29	chr4:188092800-188093000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:188092800-188093000	Active TSS	Adipose Nuclei	Adipose
31	chr4:188092800-188093400	Enhancers	Hela-S3	cervix
32	chr4:188092800-188093600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:188092800-188093800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:188092800-188093800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:188092800-188094000	Enhancers	Fetal Lung	lung
36	chr4:188093000-188093200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:188093000-188093200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr4:188093000-188093600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:188093000-188093800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:188093000-188093800	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr4:188093000-188093800	Flanking Active TSS	NHDF-Ad	bronchial
42	chr4:188093000-188094000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr4:188093200-188093400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:188093200-188093400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:188093200-188093800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:188093200-188093800	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr4:188093200-188097400	Weak transcription	NHLF	lung
48	chr4:188093200-188099200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:188093400-188093600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:188093400-188093600	Flanking Active TSS	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links