Variant report

Variant	nsv537728
Chromosome Location	chr5:37302941-37581735
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2956)
CpG islands
(count:1709)
Chromatin interactive
region (count:142)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2956 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:37371072-37371329	HepG2	liver:	n/a	chr5:37371175-37371187
2	ARID3A	chr5:37435399-37435833	HepG2	liver:	n/a	n/a
3	ARID3A	chr5:37552742-37553918	K562	blood:	n/a	n/a
4	ARID3A	chr5:37371166-37371527	K562	blood:	n/a	chr5:37371175-37371187
5	ARID3A	chr5:37379206-37379473	K562	blood:	n/a	n/a
6	ARID3A	chr5:37554224-37554305	K562	blood:	n/a	n/a
7	ARID3A	chr5:37412949-37413405	K562	blood:	n/a	n/a
8	ARID3A	chr5:37561556-37561928	K562	blood:	n/a	n/a
9	ARID3A	chr5:37413045-37413386	HepG2	liver:	n/a	n/a
10	ARID3A	chr5:37349046-37349675	HepG2	liver:	n/a	n/a
11	ARID3A	chr5:37576244-37577007	K562	blood:	n/a	chr5:37576689-37576705 chr5:37576688-37576704
12	ARID3A	chr5:37555087-37555396	K562	blood:	n/a	n/a
13	ARID3A	chr5:37435813-37436000	K562	blood:	n/a	chr5:37435891-37435907
14	ARID3A	chr5:37566412-37566482	K562	blood:	n/a	n/a
15	ARID3A	chr5:37424736-37424788	HepG2	liver:	n/a	n/a
16	ATF1	chr5:37379197-37379483	K562	blood:	n/a	n/a
17	ATF1	chr5:37413139-37413402	K562	blood:	n/a	n/a
18	ATF1	chr5:37552974-37553744	K562	blood:	n/a	n/a
19	ATF1	chr5:37576224-37576625	K562	blood:	n/a	n/a
20	ATF1	chr5:37370938-37371803	K562	blood:	n/a	n/a
21	ATF2	chr5:37370974-37371643	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr5:37379058-37379502	GM12878	blood:	n/a	n/a
23	ATF2	chr5:37370951-37371687	GM12878	blood:	n/a	n/a
24	ATF2	chr5:37379198-37379480	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr5:37370963-37371677	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr5:37370933-37371743	GM12878	blood:	n/a	n/a
27	ATF3	chr5:37379100-37379507	A549	lung:	n/a	n/a
28	ATF3	chr5:37370910-37371420	GM12878	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
29	ATF3	chr5:37413096-37413476	K562	blood:	n/a	n/a
30	ATF3	chr5:37370943-37371319	H1-hESC	embryonic stem cell:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
31	ATF3	chr5:37371024-37371385	H1-hESC	embryonic stem cell:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
32	ATF3	chr5:37370993-37371683	A549	lung:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
33	ATF3	chr5:37371073-37371320	GM12878	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
34	ATF3	chr5:37370920-37371369	K562	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
35	ATF3	chr5:37370782-37371385	K562	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
36	ATF3	chr5:37379172-37379508	A549	lung:	n/a	n/a
37	ATF3	chr5:37379108-37379491	K562	blood:	n/a	n/a
38	ATF3	chr5:37371001-37371307	HepG2	liver:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
39	BACH1	chr5:37553100-37553687	K562	blood:	n/a	n/a
40	BACH1	chr5:37371532-37371839	K562	blood:	n/a	n/a
41	BACH1	chr5:37305059-37305259	K562	blood:	n/a	n/a
42	BACH1	chr5:37512136-37512171	K562	blood:	n/a	n/a
43	BATF	chr5:37413135-37413360	GM12878	blood:	n/a	n/a
44	BATF	chr5:37379223-37379461	GM12878	blood:	n/a	n/a
45	BCL11A	chr5:37436356-37436593	GM12878	blood:	n/a	n/a
46	BCL3	chr5:37370886-37371778	A549	lung:	n/a	chr5:37371215-37371224
47	BCL3	chr5:37370732-37371729	A549	lung:	n/a	chr5:37371215-37371224
48	BCL3	chr5:37379056-37379575	A549	lung:	n/a	n/a
49	BCL3	chr5:37379009-37379598	A549	lung:	n/a	n/a
50	BCLAF1	chr5:37379021-37379585	GM12878	blood:	n/a	n/a

(count:1709 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:37371213-37371263	SK-N-SH_RA	brain:	n/a
2	chr5:37371213-37371263	SK-N-SH_RA	brain:	n/a
3	chr5:37371555-37371605	NH-A	brain:	n/a
4	chr5:37371179-37371229	NB4	blood:	n/a
5	chr5:37378050-37378100	AG09309	skin:	n/a
6	chr5:37378050-37378100	T-47D	breast:	n/a
7	chr5:37370967-37371017	GM12891	blood:	n/a
8	chr5:37379358-37379408	Caco-2	colon:	n/a
9	chr5:37371555-37371605	T-47D	breast:	n/a
10	chr5:37379272-37379322	GM19239	blood:	n/a
11	chr5:37370880-37370930	HNPCEpiC	eye:	n/a
12	chr5:37379358-37379408	IMR90	lung:	fetal
13	chr5:37379374-37379424	HCPEpiC	choroid plexus:	n/a
14	chr5:37371082-37371132	HCT-116	colon:	n/a
15	chr5:37370947-37370997	SK-N-MC	brain:	n/a
16	chr5:37379374-37379424	MCF10A-Er-Src	breast:	n/a
17	chr5:37371074-37371124	HMEC	breast:	n/a
18	chr5:37379267-37379317	HEK293	kidney:	embryo
19	chr5:37379461-37379511	K562	blood:	n/a
20	chr5:37371056-37371106	SK-N-SH	brain:	n/a
21	chr5:37371213-37371263	GM06990	blood:	n/a
22	chr5:37378229-37378279	GM06990	blood:	n/a
23	chr5:37371213-37371263	PrEC	prostate:	n/a
24	chr5:37378272-37378322	NB4	blood:	n/a
25	chr5:37378050-37378100	GM12878	blood:	n/a
26	chr5:37379272-37379322	SK-N-SH	brain:	n/a
27	chr5:37378272-37378322	GM12892	blood:	n/a
28	chr5:37370967-37371017	HepG2	liver:	n/a
29	chr5:37370880-37370930	SK-N-MC	brain:	n/a
30	chr5:37379358-37379408	PFSK-1	brain:	n/a
31	chr5:37371074-37371124	HRE	kidney:	n/a
32	chr5:37378050-37378100	HRPEpiC	eye:	n/a
33	chr5:37371074-37371124	GM12891	blood:	n/a
34	chr5:37484025-37484075	A549	lung:	n/a
35	chr5:37370880-37370930	HAEpiC	amniotic membrane:	n/a
36	chr5:37378360-37378410	NHBE	bronchial:	n/a
37	chr5:37371074-37371124	SK-N-SH_RA	brain:	n/a
38	chr5:37379396-37379446	K562	blood:	n/a
39	chr5:37379822-37379872	SKMC	muscle:	n/a
40	chr5:37378360-37378410	ProgFib	skin:	n/a
41	chr5:37370947-37370997	PANC-1	pancreas:	n/a
42	chr5:37379269-37379319	ProgFib	skin:	n/a
43	chr5:37379267-37379317	AG09319	gingival:	n/a
44	chr5:37371179-37371229	ECC-1	luminal epithelium:	n/a
45	chr5:37379374-37379424	AG04450	lung:	fetal
46	chr5:37378050-37378100	HRE	kidney:	n/a
47	chr5:37382801-37382851	NHDF-neo	bronchial:	n/a
48	chr5:37379358-37379408	PANC-1	pancreas:	n/a
49	chr5:37371053-37371103	GM12891	blood:	n/a
50	chr5:37371082-37371132	HRE	kidney:	n/a

(count:142 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr5:37343556..37345615-chr5:37366480..37369895,3	K562	blood:
2	chr5:37308340..37310527-chr5:37313095..37315302,2	K562	blood:
3	chr5:37402028..37404137-chr5:37405155..37406834,2	K562	blood:
4	chr5:37488881..37490858-chr5:37567347..37569058,2	K562	blood:
5	chr5:37412852..37413708-chr5:37554717..37555628,3	MCF-7	breast:
6	chr5:37343556..37345615-chr5:37366480..37369895,3	K562	blood:
7	chr5:37553408..37554969-chr5:37565315..37567049,2	K562	blood:
8	chr5:37402668..37405027-chr5:37408741..37410429,2	K562	blood:
9	chr5:37578232..37579991-chr5:37581584..37583169,2	MCF-7	breast:
10	chr5:37550784..37553523-chr5:37560304..37561961,2	MCF-7	breast:
11	chr5:37550272..37552016-chr5:37552928..37554782,2	MCF-7	breast:
12	chr5:37551924..37555267-chr5:37556271..37558320,3	K562	blood:
13	chr5:37318176..37320415-chr5:37333622..37336534,2	K562	blood:
14	chr12:7052910..7053902-chr5:37371084..37371594,2	Hela-S3	cervix:
15	chr5:37413110..37413637-chr5:37840070..37840640,2	MCF-7	breast:
16	chr5:37402668..37405027-chr5:37408741..37410429,2	K562	blood:
17	chr5:37395673..37397370-chr5:37410862..37413241,2	MCF-7	breast:
18	chr5:37440538..37443537-chr5:37502324..37504824,2	K562	blood:
19	chr5:37423699..37426165-chr5:37428640..37431370,2	MCF-7	breast:
20	chr5:37392088..37394720-chr5:37398631..37400477,2	K562	blood:
21	chr5:37389025..37391631-chr5:37392336..37394905,2	K562	blood:
22	chr5:37341337..37344195-chr5:37360002..37362809,2	K562	blood:
23	chr5:37398413..37401041-chr5:37401249..37404698,3	K562	blood:
24	chr5:37367445..37369110-chr5:37369671..37371335,2	MCF-7	breast:
25	chr5:37351031..37353005-chr5:37354563..37356913,2	K562	blood:
26	chr5:37397085..37398718-chr5:37402352..37404618,2	MCF-7	breast:
27	chr5:37412806..37413850-chr5:37900474..37901433,3	MCF-7	breast:
28	chr5:37341337..37344195-chr5:37360002..37362809,2	K562	blood:
29	chr5:37503334..37505446-chr5:37509179..37510910,2	K562	blood:
30	chr5:37358150..37361413-chr5:37362395..37366227,3	K562	blood:
31	chr5:37370064..37373071-chr5:37393227..37395634,3	K562	blood:
32	chr5:37370138..37373249-chr5:37374935..37377740,7	K562	blood:
33	chr5:37578232..37579991-chr5:37581584..37583169,2	MCF-7	breast:
34	chr5:37313041..37316016-chr5:37316235..37319015,2	K562	blood:
35	chr5:37413098..37413750-chr5:37837537..37838115,2	MCF-7	breast:
36	chr17:61358570..61359089-chr5:37412803..37413392,2	MCF-7	breast:
37	chr5:37395673..37397370-chr5:37410862..37413241,2	MCF-7	breast:
38	chr5:37550784..37553523-chr5:37560304..37561961,2	MCF-7	breast:
39	chr5:37559780..37563110-chr5:37563759..37567373,3	K562	blood:
40	chr5:37369538..37373129-chr5:37377393..37380859,4	MCF-7	breast:
41	chr5:37313041..37316016-chr5:37316235..37320190,3	K562	blood:
42	chr5:37313041..37316016-chr5:37316235..37319015,2	K562	blood:
43	chr5:37290610..37293343-chr5:37317784..37320761,2	K562	blood:
44	chr5:37565296..37570234-chr5:37571928..37578079,8	K562	blood:
45	chr5:37539872..37542556-chr5:37548847..37552617,3	K562	blood:
46	chr15:94515130..94515844-chr5:37350902..37351467,2	MCF-7	breast:
47	chr5:37551824..37554603-chr5:37555317..37558093,4	K562	blood:
48	chr5:37369538..37373129-chr5:37377393..37380859,4	MCF-7	breast:
49	chr5:37574620..37576476-chr5:37584938..37587005,2	K562	blood:
50	chr5:37369760..37372730-chr5:37375256..37380889,7	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR70-4	chr5:37377151-37377385	NONHSAT101062
2	lnc-C5orf42-5	chr5:37324306-37324596	expReg_chr5_1217_-
3	lnc-NUP155-5	chr5:37505790-37506959	NONHSAT101066
4	lnc-WDR70-4	chr5:37377986-37378073	NONHSAT101062
5	lnc-NIPBL-7	chr5:37381704-37381911	NONHSAT101065
6	lnc-NIPBL-7	chr5:37379591-37379656	NONHSAT101065
7	lnc-NIPBL-7	chr5:37379404-37379494	NONHSAT101065

No data

Variant related genes	Relation type
ENSG00000250455	TF binding region
WDR70	TF binding region
ENSG00000248216	TF binding region
RNU7-75P	TF binding region
NUP155	TF binding region
ENSG00000250455	CpG island
WDR70	CpG island
ENSG00000248216	CpG island
RNU7-75P	CpG island
NUP155	CpG island
ENSG00000250455	chromatin interactions
ENSG00000253513	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000082068	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000161847	chromatin interactions
ENSG00000236137	chromatin interactions
ENSG00000173209	chromatin interactions
ENSG00000248587	chromatin interactions
ENSG00000145741	chromatin interactions
ENSG00000215190	chromatin interactions
ENSG00000154222	chromatin interactions
ENSG00000113569	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000183666	chromatin interactions
ENSG00000164190	chromatin interactions
ENSG00000104549	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000251880	chromatin interactions

Extended variants
information (count: 10557 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:10557 , 50 per page) page: 1 2 3 4 5 6 7 ... 212

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75034313	chr5:37302943-37302944	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs373119361	chr5:37302969-37302970	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550009226	chr5:37303005-37303006	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377515747	chr5:37303024-37303025	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs369762624	chr5:37303042-37303043	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs376977724	chr5:37303044-37303045	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112720263	chr5:37303065-37303066	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75922058	chr5:37303070-37303071	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77144825	chr5:37303071-37303072	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs150081901	chr5:37303072-37303073	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs75204736	chr5:37303074-37303075	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547688709	chr5:37303087-37303088	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566162693	chr5:37303123-37303124	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs540064951	chr5:37303137-37303138	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558404729	chr5:37303163-37303164	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576672296	chr5:37303171-37303172	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs376961941	chr5:37303177-37303178	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs367716323	chr5:37303257-37303258	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs111390180	chr5:37303273-37303274	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537351598	chr5:37303304-37303305	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373347335	chr5:37303344-37303345	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs377347663	chr5:37303353-37303354	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370251412	chr5:37303355-37303356	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200202942	chr5:37303365-37303366	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs143682692	chr5:37303370-37303371	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs148111764	chr5:37303392-37303393	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199530136	chr5:37303401-37303402	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201769194	chr5:37303413-37303414	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs554780026	chr5:37303431-37303432	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs559845218	chr5:37303452-37303453	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs376467373	chr5:37303453-37303454	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371223329	chr5:37303456-37303457	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374135416	chr5:37303457-37303458	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138548491	chr5:37303493-37303494	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200263549	chr5:37303516-37303517	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs377650166	chr5:37303534-37303535	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs370888513	chr5:37303549-37303550	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs113458600	chr5:37303555-37303556	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs563948901	chr5:37303658-37303659	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs369548736	chr5:37303689-37303690	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558570793	chr5:37303771-37303772	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs183229635	chr5:37303793-37303794	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs562005391	chr5:37303812-37303813	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs529304747	chr5:37303832-37303833	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs79265851	chr5:37303878-37303879	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs554569423	chr5:37303906-37303907	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs574505299	chr5:37303947-37303948	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs566048659	chr5:37303988-37303989	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs188696386	chr5:37304005-37304006	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs115185678	chr5:37304034-37304035	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Lung cancer	19153074	CNVD
Cornelia de Lange syndrome	21085971	CNVD
Autism	21701786	CNVD
Cervical cancer	16585170	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Autism	22549408	CNVD
Schizophrenia	23813976	CNVD
Schizophrenia	21346763	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:5296 , 50 per page) page: 1 2 3 4 5 6 7 ... 106

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37287800-37304600	Weak transcription	Fetal Heart	heart
2	chr5:37288200-37320000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:37289000-37369200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:37289400-37310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:37289800-37323600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:37294400-37310800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:37296400-37306400	Strong transcription	Fetal Brain Female	brain
8	chr5:37296400-37307600	Strong transcription	Brain Germinal Matrix	brain
9	chr5:37296400-37308000	Strong transcription	Fetal Muscle Leg	muscle
10	chr5:37296400-37365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:37296400-37369000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:37296600-37305800	Strong transcription	Fetal Kidney	kidney
13	chr5:37296600-37308000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:37296600-37318600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:37296800-37306600	Strong transcription	Colon Smooth Muscle	Colon
16	chr5:37296800-37307400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:37296800-37307600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:37296800-37307800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:37296800-37308000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:37296800-37308000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:37296800-37308000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr5:37296800-37308000	Strong transcription	Hela-S3	cervix
23	chr5:37296800-37311000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr5:37296800-37316600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:37296800-37316800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:37296800-37318400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr5:37296800-37320200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr5:37296800-37321600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:37296800-37353200	Strong transcription	Fetal Thymus	thymus
30	chr5:37296800-37358400	Strong transcription	Placenta	Placenta
31	chr5:37296800-37358600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:37296800-37358600	Strong transcription	Liver	Liver
33	chr5:37296800-37359000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:37296800-37359800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:37296800-37359800	Strong transcription	Fetal Intestine Large	intestine
36	chr5:37296800-37360000	Strong transcription	Adipose Nuclei	Adipose
37	chr5:37296800-37364600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr5:37296800-37364600	Strong transcription	Dnd41	blood
39	chr5:37296800-37365600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr5:37297000-37306400	Strong transcription	Ovary	ovary
41	chr5:37297000-37307600	Strong transcription	Osteobl	bone
42	chr5:37297000-37307800	Strong transcription	Lung	lung
43	chr5:37297000-37308000	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr5:37297000-37308000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:37297000-37308000	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:37297000-37308000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:37297000-37310400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:37297000-37310400	Strong transcription	Left Ventricle	heart
49	chr5:37297000-37310400	Strong transcription	Thymus	Thymus
50	chr5:37297000-37310800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links