Variant report

Variant	nsv537730
Chromosome Location	chr5:37331852-37586211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2831)
CpG islands
(count:1650)
Chromatin interactive
region (count:134)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2831 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:37379206-37379473	K562	blood:	n/a	n/a
2	ARID3A	chr5:37412949-37413405	K562	blood:	n/a	n/a
3	ARID3A	chr5:37371166-37371527	K562	blood:	n/a	chr5:37371175-37371187
4	ARID3A	chr5:37576244-37577007	K562	blood:	n/a	chr5:37576689-37576705 chr5:37576688-37576704
5	ARID3A	chr5:37566412-37566482	K562	blood:	n/a	n/a
6	ARID3A	chr5:37435399-37435833	HepG2	liver:	n/a	n/a
7	ARID3A	chr5:37555087-37555396	K562	blood:	n/a	n/a
8	ARID3A	chr5:37435813-37436000	K562	blood:	n/a	chr5:37435891-37435907
9	ARID3A	chr5:37552742-37553918	K562	blood:	n/a	n/a
10	ARID3A	chr5:37413045-37413386	HepG2	liver:	n/a	n/a
11	ARID3A	chr5:37349046-37349675	HepG2	liver:	n/a	n/a
12	ARID3A	chr5:37424736-37424788	HepG2	liver:	n/a	n/a
13	ARID3A	chr5:37371072-37371329	HepG2	liver:	n/a	chr5:37371175-37371187
14	ARID3A	chr5:37554224-37554305	K562	blood:	n/a	n/a
15	ARID3A	chr5:37561556-37561928	K562	blood:	n/a	n/a
16	ATF1	chr5:37413139-37413402	K562	blood:	n/a	n/a
17	ATF1	chr5:37576224-37576625	K562	blood:	n/a	n/a
18	ATF1	chr5:37370938-37371803	K562	blood:	n/a	n/a
19	ATF1	chr5:37552974-37553744	K562	blood:	n/a	n/a
20	ATF1	chr5:37379197-37379483	K562	blood:	n/a	n/a
21	ATF2	chr5:37370951-37371687	GM12878	blood:	n/a	n/a
22	ATF2	chr5:37370963-37371677	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr5:37370974-37371643	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF2	chr5:37379058-37379502	GM12878	blood:	n/a	n/a
25	ATF2	chr5:37379198-37379480	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr5:37370933-37371743	GM12878	blood:	n/a	n/a
27	ATF3	chr5:37370920-37371369	K562	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
28	ATF3	chr5:37371024-37371385	H1-hESC	embryonic stem cell:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
29	ATF3	chr5:37370943-37371319	H1-hESC	embryonic stem cell:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
30	ATF3	chr5:37371001-37371307	HepG2	liver:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
31	ATF3	chr5:37371073-37371320	GM12878	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
32	ATF3	chr5:37370993-37371683	A549	lung:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
33	ATF3	chr5:37370782-37371385	K562	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
34	ATF3	chr5:37413096-37413476	K562	blood:	n/a	n/a
35	ATF3	chr5:37379108-37379491	K562	blood:	n/a	n/a
36	ATF3	chr5:37370910-37371420	GM12878	blood:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
37	ATF3	chr5:37379172-37379508	A549	lung:	n/a	n/a
38	ATF3	chr5:37379100-37379507	A549	lung:	n/a	n/a
39	BACH1	chr5:37553100-37553687	K562	blood:	n/a	n/a
40	BACH1	chr5:37371532-37371839	K562	blood:	n/a	n/a
41	BACH1	chr5:37512136-37512171	K562	blood:	n/a	n/a
42	BATF	chr5:37379223-37379461	GM12878	blood:	n/a	n/a
43	BATF	chr5:37413135-37413360	GM12878	blood:	n/a	n/a
44	BCL11A	chr5:37436356-37436593	GM12878	blood:	n/a	n/a
45	BCL3	chr5:37379056-37379575	A549	lung:	n/a	n/a
46	BCL3	chr5:37379009-37379598	A549	lung:	n/a	n/a
47	BCL3	chr5:37370886-37371778	A549	lung:	n/a	chr5:37371215-37371224
48	BCL3	chr5:37370732-37371729	A549	lung:	n/a	chr5:37371215-37371224
49	BCLAF1	chr5:37379111-37379567	GM12878	blood:	n/a	n/a
50	BCLAF1	chr5:37370979-37371786	GM12878	blood:	n/a	chr5:37371215-37371224

(count:1650 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:37379272-37379322	HCPEpiC	choroid plexus:	n/a
2	chr5:37370967-37371017	K562	blood:	n/a
3	chr5:37378229-37378279	HRE	kidney:	n/a
4	chr5:37379272-37379322	HCPEpiC	choroid plexus:	n/a
5	chr5:37370967-37371017	K562	blood:	n/a
6	chr5:37378229-37378279	HRE	kidney:	n/a
7	chr5:37379822-37379872	AoSMC	blood vessel:	n/a
8	chr5:37370947-37370997	HCPEpiC	choroid plexus:	n/a
9	chr5:37379358-37379408	BE2_C	brain:	n/a
10	chr5:37379272-37379322	PFSK-1	brain:	n/a
11	chr5:37371074-37371124	HAEpiC	amniotic membrane:	n/a
12	chr5:37484025-37484075	PrEC	prostate:	n/a
13	chr5:37370880-37370930	HRE	kidney:	n/a
14	chr5:37379374-37379424	Hepatocyte	liver:	n/a
15	chr5:37371047-37371097	HCPEpiC	choroid plexus:	n/a
16	chr5:37370880-37370930	HCF	heart:	n/a
17	chr5:37371192-37371242	HNPCEpiC	eye:	n/a
18	chr5:37371047-37371097	NB4	blood:	n/a
19	chr5:37371047-37371097	MCF-7	breast:	n/a
20	chr5:37382801-37382851	HEEpiC	esophagus:	n/a
21	chr5:37378050-37378100	AG04449	skin:	fetal
22	chr5:37371555-37371605	HMEC	breast:	n/a
23	chr5:37371628-37371678	BE2_C	brain:	n/a
24	chr5:37378229-37378279	NB4	blood:	n/a
25	chr5:37371213-37371263	MCF10A-Er-Src	breast:	n/a
26	chr5:37371047-37371097	SKMC	muscle:	n/a
27	chr5:37371213-37371263	HIPEpiC	eye:	n/a
28	chr5:37379396-37379446	HCF	heart:	n/a
29	chr5:37371628-37371678	GM12878	blood:	n/a
30	chr5:37371192-37371242	A549	lung:	n/a
31	chr5:37378360-37378410	HCT-116	colon:	n/a
32	chr5:37378050-37378100	Hela-S3	cervix:	n/a
33	chr5:37371555-37371605	MCF10A-Er-Src	breast:	n/a
34	chr5:37370947-37370997	HIPEpiC	eye:	n/a
35	chr5:37379267-37379317	HCT-116	colon:	n/a
36	chr5:37379269-37379319	RPTEC	kidney:	n/a
37	chr5:37371628-37371678	CMK	blood:	n/a
38	chr5:37379267-37379317	RPTEC	kidney:	n/a
39	chr5:37379822-37379872	Caco-2	colon:	n/a
40	chr5:37371053-37371103	HL-60	blood:	n/a
41	chr5:37379358-37379408	T-47D	breast:	n/a
42	chr5:37371628-37371678	HepG2	liver:	n/a
43	chr5:37379269-37379319	GM12891	blood:	n/a
44	chr5:37378229-37378279	SK-N-SH_RA	brain:	n/a
45	chr5:37371192-37371242	ECC-1	luminal epithelium:	n/a
46	chr5:37379374-37379424	HRPEpiC	eye:	n/a
47	chr5:37378360-37378410	HepG2	liver:	n/a
48	chr5:37379374-37379424	A549	lung:	n/a
49	chr5:37379269-37379319	NHDF-neo	bronchial:	n/a
50	chr5:37378050-37378100	ProgFib	skin:	n/a

(count:134 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr5:37370064..37373071-chr5:37393227..37395634,3	K562	blood:
2	chr5:37551824..37554603-chr5:37555317..37558093,4	K562	blood:
3	chr12:7052910..7053902-chr5:37371084..37371594,2	Hela-S3	cervix:
4	chr5:37378807..37379355-chr5:37554382..37555285,2	K562	blood:
5	chr5:37488881..37490858-chr5:37567347..37569058,2	K562	blood:
6	chr19:10443916..10444436-chr5:37370772..37371335,2	NB4	blood:
7	chr5:37402028..37404137-chr5:37405155..37406834,2	K562	blood:
8	chr5:37550616..37553710-chr5:37559318..37562633,4	K562	blood:
9	chr5:37509914..37511896-chr5:37518755..37521412,2	K562	blood:
10	chr5:37412738..37413377-chr5:38194610..38195311,2	MCF-7	breast:
11	chr5:37341224..37342807-chr5:37371137..37373027,2	K562	blood:
12	chr5:37576360..37578315-chr5:37581420..37583139,2	K562	blood:
13	chr5:37412806..37413850-chr5:37900474..37901433,3	MCF-7	breast:
14	chr5:37574620..37576476-chr5:37584938..37587005,2	K562	blood:
15	chr5:36733395..36735929-chr5:37371507..37374356,2	MCF-7	breast:
16	chr5:37551924..37555267-chr5:37556271..37558320,3	K562	blood:
17	chr5:37363225..37366000-chr5:37368563..37371283,3	K562	blood:
18	chr5:37550616..37553710-chr5:37559318..37562633,4	K562	blood:
19	chr5:37353747..37356748-chr5:37369994..37371965,3	K562	blood:
20	chr5:37553408..37554969-chr5:37565315..37567049,2	K562	blood:
21	chr5:37378209..37381818-chr5:37388003..37389859,3	K562	blood:
22	chr5:37402028..37404137-chr5:37405155..37406834,2	K562	blood:
23	chr5:37551924..37555267-chr5:37556271..37558320,3	K562	blood:
24	chr5:37541266..37543534-chr5:37545440..37547559,2	K562	blood:
25	chr5:37370692..37371320-chr5:72794239..72794798,2	Hela-S3	cervix:
26	chr5:37569701..37572288-chr5:37579867..37582083,2	MCF-7	breast:
27	chr5:37488881..37490858-chr5:37567347..37569058,2	K562	blood:
28	chr5:37379216..37379885-chr6:58287233..58287739,2	Hela-S3	cervix:
29	chr5:37392088..37394720-chr5:37398631..37400477,2	K562	blood:
30	chr5:37569124..37569718-chr8:118852447..118853416,2	MCF-7	breast:
31	chr5:37412788..37413557-chr5:38023669..38024455,2	MCF-7	breast:
32	chr5:37438128..37441611-chr5:37451601..37454118,3	K562	blood:
33	chr5:37572624..37574156-chr5:37580736..37583153,2	K562	blood:
34	chr5:37503334..37505446-chr5:37509179..37510910,2	K562	blood:
35	chr5:37569701..37572288-chr5:37579867..37582083,2	MCF-7	breast:
36	chr5:37576360..37578315-chr5:37581420..37583139,2	K562	blood:
37	chr5:37395673..37397370-chr5:37410862..37413241,2	MCF-7	breast:
38	chr5:37583782..37585545-chr5:37586859..37589248,2	K562	blood:
39	chr5:37412794..37413863-chr5:38192922..38193865,5	K562	blood:
40	chr5:37367445..37369110-chr5:37369671..37371335,2	MCF-7	breast:
41	chr5:37349723..37351295-chr5:37369578..37371440,2	K562	blood:
42	chr5:37565296..37570234-chr5:37571928..37578079,8	K562	blood:
43	chr5:37536707..37538331-chr5:37538401..37541156,2	K562	blood:
44	chr5:37509914..37511896-chr5:37518755..37521412,2	K562	blood:
45	chr5:37438128..37441611-chr5:37451601..37454118,3	K562	blood:
46	chr5:37402668..37405027-chr5:37408741..37410429,2	K562	blood:
47	chr5:37541266..37543534-chr5:37545440..37547559,2	K562	blood:
48	chr5:37343556..37345615-chr5:37366480..37369895,3	K562	blood:
49	chr5:37369538..37373129-chr5:37377393..37380859,4	MCF-7	breast:
50	chr5:37440538..37443537-chr5:37502324..37504824,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NIPBL-7	chr5:37379591-37379656	NONHSAT101065
2	lnc-NIPBL-7	chr5:37379404-37379494	NONHSAT101065
3	lnc-NIPBL-7	chr5:37381704-37381911	NONHSAT101065
4	lnc-NUP155-5	chr5:37505790-37506959	NONHSAT101066
5	lnc-WDR70-4	chr5:37377986-37378073	NONHSAT101062
6	lnc-WDR70-4	chr5:37377151-37377385	NONHSAT101062

No data

Variant related genes	Relation type
ENSG00000250455	TF binding region
WDR70	TF binding region
ENSG00000248216	TF binding region
NUP155	TF binding region
ENSG00000250455	CpG island
WDR70	CpG island
ENSG00000248216	CpG island
NUP155	CpG island
ENSG00000145741	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000173209	chromatin interactions
ENSG00000113569	chromatin interactions
ENSG00000251880	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000253513	chromatin interactions
ENSG00000082068	chromatin interactions
ENSG00000164190	chromatin interactions
ENSG00000104549	chromatin interactions
ENSG00000250455	chromatin interactions
ENSG00000154222	chromatin interactions
ENSG00000183666	chromatin interactions
ENSG00000236137	chromatin interactions
ENSG00000248587	chromatin interactions
ENSG00000161847	chromatin interactions
ENSG00000215190	chromatin interactions

Extended variants
information (count: 9616 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:9616 , 50 per page) page: 1 2 3 4 5 6 7 ... 193

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370884825	chr5:37331853-37331854	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs139891649	chr5:37331854-37331855	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs566167474	chr5:37331856-37331857	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs375239602	chr5:37331869-37331870	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs201999948	chr5:37331907-37331908	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs376025273	chr5:37331915-37331916	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs368395388	chr5:37331937-37331938	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs370632911	chr5:37331941-37331942	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs141263591	chr5:37331984-37331985	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs13170025	chr5:37331985-37331986	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs541372294	chr5:37331997-37331998	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs76290783	chr5:37332037-37332038	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs556131271	chr5:37332041-37332042	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs187897037	chr5:37332063-37332064	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs370604223	chr5:37332064-37332065	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs116018063	chr5:37332082-37332083	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs6884421	chr5:37332128-37332129	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs554085085	chr5:37332164-37332165	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs572340329	chr5:37332191-37332192	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561337534	chr5:37332270-37332271	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs11305356	chr5:37332271-37332272	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs397997405	chr5:37332289-37332290	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77091086	chr5:37332308-37332309	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558139832	chr5:37332332-37332333	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs576460100	chr5:37332337-37332338	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs530175782	chr5:37332365-37332366	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550030074	chr5:37332394-37332395	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543896858	chr5:37332446-37332447	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562187924	chr5:37332493-37332494	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs150316147	chr5:37332517-37332518	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs541355498	chr5:37332518-37332519	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs217790	chr5:37332524-37332525	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs190465616	chr5:37332526-37332527	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551765830	chr5:37332551-37332552	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564063390	chr5:37332597-37332598	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs177811	chr5:37332615-37332616	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs549832345	chr5:37332618-37332619	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568189485	chr5:37332673-37332674	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543301679	chr5:37332733-37332734	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs553532854	chr5:37332738-37332739	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs573566799	chr5:37332749-37332750	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547579146	chr5:37332760-37332761	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs559619604	chr5:37332775-37332776	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147147884	chr5:37332790-37332791	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs140189689	chr5:37332814-37332815	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs372737326	chr5:37332825-37332826	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs532387367	chr5:37332863-37332864	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs375099554	chr5:37332864-37332865	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs367671758	chr5:37333000-37333001	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs537184661	chr5:37333024-37333025	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Lung cancer	19153074	CNVD
Cornelia de Lange syndrome	21085971	CNVD
Autism	21701786	CNVD
Cervical cancer	16585170	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Autism	22549408	CNVD
Schizophrenia	23813976	CNVD
Schizophrenia	21346763	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:4620 , 50 per page) page: 1 2 3 4 5 6 7 ... 93

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37289000-37369200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:37296400-37365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:37296400-37369000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:37296800-37353200	Strong transcription	Fetal Thymus	thymus
5	chr5:37296800-37358400	Strong transcription	Placenta	Placenta
6	chr5:37296800-37358600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:37296800-37358600	Strong transcription	Liver	Liver
8	chr5:37296800-37359000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:37296800-37359800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:37296800-37359800	Strong transcription	Fetal Intestine Large	intestine
11	chr5:37296800-37360000	Strong transcription	Adipose Nuclei	Adipose
12	chr5:37296800-37364600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:37296800-37364600	Strong transcription	Dnd41	blood
14	chr5:37296800-37365600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:37297000-37333200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:37297000-37364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:37297000-37365400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:37297200-37358800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:37297400-37334400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:37297400-37364600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr5:37297800-37359800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:37298600-37337800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:37307800-37368600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:37308800-37334800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:37308800-37334800	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:37308800-37335000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:37308800-37337800	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr5:37308800-37353200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr5:37308800-37365400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:37311600-37351400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:37311600-37365400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:37311600-37365400	Strong transcription	Fetal Muscle Leg	muscle
33	chr5:37312000-37337600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr5:37313200-37333400	Weak transcription	Fetal Brain Male	brain
35	chr5:37317600-37339800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:37318400-37359000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:37319000-37358400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr5:37319200-37337400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:37319200-37364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:37319400-37365400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr5:37319600-37347800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr5:37319800-37349200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:37320000-37334600	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr5:37321200-37337400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr5:37321600-37359600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr5:37321800-37335400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr5:37322000-37334800	Strong transcription	Left Ventricle	heart
48	chr5:37322200-37334800	Strong transcription	Fetal Lung	lung
49	chr5:37322200-37334800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr5:37322200-37360000	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links