Variant report

Variant	nsv538315
Chromosome Location	chr6:76238459-76482117
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2481)
CpG islands
(count:1098)
Chromatin interactive
region (count:233)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2481 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:76458528-76458682	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:76339500-76339892	K562	blood:	n/a	n/a
3	ARID3A	chr6:76383585-76383961	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:76272954-76273059	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:76311201-76311902	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:76331504-76331869	K562	blood:	n/a	n/a
7	ARID3A	chr6:76333004-76333194	K562	blood:	n/a	n/a
8	ARID3A	chr6:76457201-76457496	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:76445315-76446019	HepG2	liver:	n/a	n/a
10	ARID3A	chr6:76315396-76315502	K562	blood:	n/a	n/a
11	ARID3A	chr6:76342477-76343204	K562	blood:	n/a	chr6:76342662-76342678
12	ARID3A	chr6:76313655-76313921	K562	blood:	n/a	n/a
13	ARID3A	chr6:76337921-76337975	HepG2	liver:	n/a	n/a
14	ARID3A	chr6:76312666-76313021	K562	blood:	n/a	n/a
15	ARID3A	chr6:76322881-76323353	HepG2	liver:	n/a	n/a
16	ARID3A	chr6:76458622-76458651	K562	blood:	n/a	n/a
17	ARID3A	chr6:76320480-76320552	K562	blood:	n/a	n/a
18	ATF1	chr6:76244545-76244659	K562	blood:	n/a	n/a
19	ATF1	chr6:76342790-76343022	K562	blood:	n/a	n/a
20	ATF2	chr6:76260318-76260565	GM12878	blood:	n/a	n/a
21	ATF2	chr6:76311636-76312501	GM12878	blood:	n/a	n/a
22	ATF2	chr6:76260226-76260768	GM12878	blood:	n/a	n/a
23	ATF3	chr6:76400719-76401129	HCT-116	colon:	n/a	n/a
24	BACH1	chr6:76459213-76459671	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr6:76458387-76458719	H1-hESC	embryonic stem cell:	n/a	n/a
26	BACH1	chr6:76318040-76318256	H1-hESC	embryonic stem cell:	n/a	n/a
27	BACH1	chr6:76261204-76261211	K562	blood:	n/a	n/a
28	BACH1	chr6:76407134-76407232	K562	blood:	n/a	n/a
29	BACH1	chr6:76312675-76312783	K562	blood:	n/a	n/a
30	BACH1	chr6:76311710-76311864	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr6:76458435-76458631	K562	blood:	n/a	n/a
32	BATF	chr6:76453741-76453966	GM12878	blood:	n/a	n/a
33	BATF	chr6:76468871-76469148	GM12878	blood:	n/a	chr6:76468983-76468994
34	BATF	chr6:76289645-76290038	GM12878	blood:	n/a	n/a
35	BATF	chr6:76260251-76260762	GM12878	blood:	n/a	chr6:76260414-76260423
36	BCL11A	chr6:76289736-76289977	GM12878	blood:	n/a	n/a
37	BCL11A	chr6:76289699-76289966	GM12878	blood:	n/a	n/a
38	BCL11A	chr6:76453638-76454028	GM12878	blood:	n/a	n/a
39	BCL11A	chr6:76453680-76454055	GM12878	blood:	n/a	n/a
40	BCL3	chr6:76311339-76311837	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
41	BCLAF1	chr6:76311198-76312444	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
42	BCLAF1	chr6:76289601-76290063	GM12878	blood:	n/a	n/a
43	BCLAF1	chr6:76311127-76312480	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
44	BHLHE40	chr6:76397729-76398031	K562	blood:	n/a	n/a
45	BHLHE40	chr6:76452022-76452184	HepG2	liver:	n/a	chr6:76452041-76452057
46	BHLHE40	chr6:76312095-76312309	K562	blood:	n/a	n/a
47	BHLHE40	chr6:76458636-76459067	K562	blood:	n/a	chr6:76459001-76459017
48	BHLHE40	chr6:76311300-76311866	K562	blood:	n/a	chr6:76311797-76311813
49	BHLHE40	chr6:76312070-76312724	GM12878	blood:	n/a	n/a
50	BHLHE40	chr6:76463942-76463968	GM12878	blood:	n/a	n/a

(count:1098 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:76310551-76310601	AG10803	skin:	n/a
2	chr6:76425457-76425507	HNPCEpiC	eye:	n/a
3	chr6:76458633-76458683	SKMC	muscle:	n/a
4	chr6:76312378-76312428	ovcar-3	ovarian:	n/a
5	chr6:76458633-76458683	GM12891	blood:	n/a
6	chr6:76312378-76312428	BJ	skin:	n/a
7	chr6:76330505-76330555	Jurkat	blood:	n/a
8	chr6:76312378-76312428	Hepatocyte	liver:	n/a
9	chr6:76319793-76319843	SKMC	muscle:	n/a
10	chr6:76311363-76311413	K562	blood:	n/a
11	chr6:76330505-76330555	GM06990	blood:	n/a
12	chr6:76461321-76461371	HUVEC	blood vessel:	n/a
13	chr6:76311920-76311970	PFSK-1	brain:	n/a
14	chr6:76458005-76458055	BJ	skin:	n/a
15	chr6:76311636-76311686	BJ	skin:	n/a
16	chr6:76458633-76458683	Caco-2	colon:	n/a
17	chr6:76459511-76459561	K562	blood:	n/a
18	chr6:76312378-76312428	K562	blood:	n/a
19	chr6:76311363-76311413	PFSK-1	brain:	n/a
20	chr6:76309300-76309350	AG04449	skin:	fetal
21	chr6:76311920-76311970	SAEC	small airway:	n/a
22	chr6:76312378-76312428	HCT-116	colon:	n/a
23	chr6:76330505-76330555	HL-60	blood:	n/a
24	chr6:76341733-76341783	AG10803	skin:	n/a
25	chr6:76425457-76425507	H1-hESC	embryonic stem cell:	embryo
26	chr6:76456187-76456237	NT2-D1	testis:	n/a
27	chr6:76461321-76461371	ProgFib	skin:	n/a
28	chr6:76311331-76311381	GM12892	blood:	n/a
29	chr6:76311363-76311413	NHBE	bronchial:	n/a
30	chr6:76309300-76309350	K562	blood:	n/a
31	chr6:76311920-76311970	AG04449	skin:	fetal
32	chr6:76459077-76459127	U87	brain:	n/a
33	chr6:76330505-76330555	AG04449	skin:	fetal
34	chr6:76458633-76458683	ovcar-3	ovarian:	n/a
35	chr6:76459511-76459561	SK-N-MC	brain:	n/a
36	chr6:76312378-76312428	HPAEpiC	pulmonary alveolar:	n/a
37	chr6:76458005-76458055	GM12892	blood:	n/a
38	chr6:76459511-76459561	Hepatocyte	liver:	n/a
39	chr6:76311636-76311686	HRE	kidney:	n/a
40	chr6:76311363-76311413	GM12892	blood:	n/a
41	chr6:76425457-76425507	AG04449	skin:	fetal
42	chr6:76461321-76461371	GM19239	blood:	n/a
43	chr6:76319793-76319843	NHDF-neo	bronchial:	n/a
44	chr6:76425457-76425507	Jurkat	blood:	n/a
45	chr6:76311636-76311686	IMR90	lung:	fetal
46	chr6:76315197-76315247	HNPCEpiC	eye:	n/a
47	chr6:76341733-76341783	GM19239	blood:	n/a
48	chr6:76319793-76319843	MCF-7	breast:	n/a
49	chr6:76341733-76341783	Hepatocyte	liver:	n/a
50	chr6:76309300-76309350	SKMC	muscle:	n/a

(count:233 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr6:76337128..76338933-chr6:76358786..76360573,2	K562	blood:
2	chr1:149223806..149225375-chr6:76310132..76311971,2	MCF-7	breast:
3	chr6:76456068..76458008-chr6:76564755..76567247,2	MCF-7	breast:
4	chr6:76286759..76291659-chr6:76308574..76313520,8	K562	blood:
5	chr6:76443894..76445853-chr6:76451155..76454793,3	MCF-7	breast:
6	chr6:76238154..76239955-chr6:76258308..76260923,2	K562	blood:
7	chr6:76413657..76415200-chr6:76420816..76423209,2	MCF-7	breast:
8	chr6:76465841..76467549-chr6:76494669..76496179,2	MCF-7	breast:
9	chr6:76313605..76316318-chr6:76324603..76327531,2	MCF-7	breast:
10	chr6:76426836..76429906-chr6:76458673..76460595,3	MCF-7	breast:
11	chr6:75973426..75975778-chr6:76313491..76316125,2	K562	blood:
12	chr6:76316156..76318537-chr6:76328526..76330839,2	MCF-7	breast:
13	chr6:76467679..76470814-chr6:76472807..76475124,3	K562	blood:
14	chr6:76369470..76371755-chr6:76372281..76373933,2	K562	blood:
15	chr16:56659383..56660167-chr6:76311075..76311920,2	HCT-116	colon:
16	chr6:76359388..76361142-chr6:76366344..76368393,2	K562	blood:
17	chr6:76361046..76364656-chr6:76366287..76368782,3	K562	blood:
18	chr6:76461468..76463754-chr6:76469518..76472253,2	MCF-7	breast:
19	chr6:76457017..76459821-chr6:76526945..76528874,2	MCF-7	breast:
20	chr6:76311308..76313074-chr6:76339776..76343248,3	MCF-7	breast:
21	chr6:76312117..76313931-chr6:76346420..76348406,2	K562	blood:
22	chr6:76310342..76312305-chr6:76373129..76377244,3	K562	blood:
23	chr6:76370677..76372880-chr6:76377007..76378733,2	K562	blood:
24	chr6:76336673..76339246-chr6:76344928..76346520,2	MCF-7	breast:
25	chr6:76239231..76243066-chr6:76244899..76247605,3	K562	blood:
26	chr6:76445351..76447592-chr6:76454801..76459037,4	MCF-7	breast:
27	chr6:76431586..76433985-chr6:76438066..76440225,2	MCF-7	breast:
28	chr6:76338223..76340851-chr6:76347328..76349735,2	K562	blood:
29	chr6:76311042..76312955-chr6:76326997..76330794,3	MCF-7	breast:
30	chr6:76359039..76361608-chr6:76376741..76379401,2	MCF-7	breast:
31	chr6:76307687..76309384-chr6:76493357..76494955,2	K562	blood:
32	chr6:76348163..76350859-chr6:76356641..76358719,2	K562	blood:
33	chr17:56735238..56737884-chr6:76312067..76314109,2	MCF-7	breast:
34	chr6:76366871..76369155-chr6:76374703..76377343,2	MCF-7	breast:
35	chr6:76337128..76338933-chr6:76358786..76360573,2	K562	blood:
36	chr6:76312246..76314943-chr6:76370644..76373354,2	MCF-7	breast:
37	chr6:76359388..76361142-chr6:76366344..76368393,2	K562	blood:
38	chr6:75953153..75955682-chr6:76309116..76311798,2	K562	blood:
39	chr6:76341666..76343684-chr6:76358850..76361030,2	K562	blood:
40	chr6:76457614..76459414-chr6:76469003..76470756,2	K562	blood:
41	chr6:76369470..76371755-chr6:76372281..76373933,2	K562	blood:
42	chr6:76397986..76399777-chr6:76458759..76460559,2	MCF-7	breast:
43	chr6:76311833..76313694-chr6:76456932..76459481,3	MCF-7	breast:
44	chr6:76424414..76426953-chr6:76430333..76433018,2	MCF-7	breast:
45	chr6:76295830..76298564-chr6:76308288..76310113,2	MCF-7	breast:
46	chr6:76320020..76322105-chr6:76423785..76425773,2	K562	blood:
47	chr6:76267023..76268550-chr6:76287027..76288640,2	K562	blood:
48	chr6:76457754..76460582-chr6:76467683..76471676,6	MCF-7	breast:
49	chr6:76234510..76236120-chr6:76239992..76242407,2	MCF-7	breast:
50	chr6:75982004..75984074-chr6:76410920..76413580,2	K562	blood:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-6	chr6:76368978-76369123	NONHSAT113627
2	lnc-FILIP1-2	chr6:76320906-76321661	NONHSAT113623
3	lnc-MYO6-1	chr6:76362140-76362390	ENSG00000249080
4	lnc-MYO6-6	chr6:76357008-76357517	NONHSAT113627
5	lnc-FILIP1-3	chr6:76364686-76365015	NONHSAT113628
6	lnc-MYO6-6	chr6:76372937-76373221	NONHSAT113627
7	lnc-MYO6-7	chr6:76343366-76343442	NONHSAT113624
8	lnc-MYO6-7	chr6:76344423-76344772	NONHSAT113624
9	lnc-MYO6-1	chr6:76359931-76362040	ENSG00000249080
10	lnc-SENP6-4	chr6:76433669-76434665	NONHSAT113631
11	lnc-SENP6-5	chr6:76434955-76435356	NONHSAT113632
12	lnc-SENP6-6	chr6:76295838-76296177	NONHSAT113620
13	lnc-FILIP1-2	chr6:76320674-76321504	NONHSAT113622

No data

Variant related genes	Relation type
RN7SKP163	TF binding region
SENP6	TF binding region
MYO6	TF binding region
ENSG00000220730	TF binding region
RNU6-1016P	TF binding region
ENSG00000217488	TF binding region
RNU6-155P	TF binding region
RNU6-1338P	TF binding region
RN7SKP163	CpG island
SENP6	CpG island
MYO6	CpG island
ENSG00000220730	CpG island
RNU6-1016P	CpG island
ENSG00000217488	CpG island
RNU6-155P	CpG island
RNU6-1338P	CpG island
ENSG00000155903	chromatin interactions
ENSG00000166012	chromatin interactions
ENSG00000101447	chromatin interactions
ENSG00000143971	chromatin interactions
ENSG00000112695	chromatin interactions
ENSG00000204120	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000108854	chromatin interactions
ENSG00000100888	chromatin interactions
ENSG00000252156	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000217488	chromatin interactions
ENSG00000229862	chromatin interactions
ENSG00000164430	chromatin interactions
ENSG00000169715	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000196586	chromatin interactions
ENSG00000252498	chromatin interactions
ENSG00000244265	chromatin interactions
ENSG00000124596	chromatin interactions
ENSG00000156535	chromatin interactions
ENSG00000112701	chromatin interactions
ENSG00000001167	chromatin interactions
ENSG00000267598	chromatin interactions
ENSG00000231652	chromatin interactions
ENSG00000223169	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000181788	chromatin interactions
ENSG00000112697	chromatin interactions
ENSG00000239132	chromatin interactions
ENSG00000220730	chromatin interactions
ENSG00000123505	chromatin interactions
ENSG00000167470	chromatin interactions
ENSG00000225793	chromatin interactions
ENSG00000252137	chromatin interactions
NR4A2	miRNA target sites
KRAS	miRNA target sites

Extended variants
information (count: 7879 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:7879 , 50 per page) page: 1 2 3 4 5 6 7 ... 158

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563038800	chr6:76238473-76238474	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs149059160	chr6:76238502-76238503	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112539489	chr6:76238573-76238574	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530467982	chr6:76238599-76238600	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12202443	chr6:76238614-76238615	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs572254397	chr6:76238615-76238616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs569577172	chr6:76238625-76238626	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs78090079	chr6:76238664-76238665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs1336045	chr6:76238680-76238681	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs574728933	chr6:76238719-76238720	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs190245791	chr6:76238754-76238755	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs540594142	chr6:76238780-76238781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs557885304	chr6:76238823-76238824	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs563006680	chr6:76238841-76238842	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs182853568	chr6:76238850-76238851	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs548342894	chr6:76238906-76238907	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs560692688	chr6:76238925-76238926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs560453062	chr6:76238929-76238930	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs138737107	chr6:76238946-76238947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs76555113	chr6:76238980-76238981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs552802218	chr6:76239099-76239100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs565027466	chr6:76239127-76239128	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs188839695	chr6:76239145-76239146	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs538078301	chr6:76239254-76239255	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs13192994	chr6:76239262-76239263	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs193007705	chr6:76239351-76239352	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs185721183	chr6:76239353-76239354	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs553498072	chr6:76239537-76239538	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs571970473	chr6:76239589-76239590	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs534012066	chr6:76239717-76239718	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs187475754	chr6:76239752-76239753	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs191501917	chr6:76239763-76239764	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs183888224	chr6:76239831-76239832	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs543684629	chr6:76239840-76239841	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs9343299	chr6:76239845-76239846	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs574993287	chr6:76239846-76239847	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs554413597	chr6:76239867-76239868	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs9352215	chr6:76239881-76239882	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs17497655	chr6:76239905-76239906	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs552269119	chr6:76239936-76239937	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs117987679	chr6:76239937-76239938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs141092271	chr6:76239959-76239960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs9447503	chr6:76239964-76239965	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs73467308	chr6:76239977-76239978	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs188606501	chr6:76240001-76240002	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs547438921	chr6:76240005-76240006	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs565613825	chr6:76240050-76240051	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs535775324	chr6:76240069-76240070	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs181433310	chr6:76240080-76240081	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs72653192	chr6:76240113-76240114	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelodysplastic syndrome	18508791	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:4895 , 50 per page) page: 1 2 3 4 5 6 7 ... 98

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76234600-76242400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:76237200-76240800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:76237400-76239000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:76237800-76238800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:76238000-76238800	Enhancers	Fetal Lung	lung
6	chr6:76238000-76239000	Enhancers	Adipose Nuclei	Adipose
7	chr6:76238000-76239000	Enhancers	NHLF	lung
8	chr6:76238200-76238600	Enhancers	Hela-S3	cervix
9	chr6:76238400-76238600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr6:76238400-76238800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:76238400-76239000	Enhancers	NHDF-Ad	bronchial
12	chr6:76238400-76240600	Weak transcription	A549	lung
13	chr6:76238600-76242400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:76239600-76242600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:76240400-76240600	Bivalent Enhancer	HSMMtube	muscle
16	chr6:76240400-76240800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:76240400-76241400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:76240600-76240800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:76240600-76240800	Enhancers	A549	lung
20	chr6:76240600-76240800	Enhancers	NHLF	lung
21	chr6:76240800-76241000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:76240800-76241200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:76240800-76241600	Enhancers	Fetal Intestine Large	intestine
24	chr6:76241000-76242000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:76242000-76242600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:76242000-76242600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:76242400-76242600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr6:76242400-76242800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:76242400-76242800	Enhancers	HMEC	breast
30	chr6:76242800-76243200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:76247200-76247400	Bivalent Enhancer	Small Intestine	intestine
32	chr6:76255400-76256600	Enhancers	A549	lung
33	chr6:76255600-76256600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:76256200-76256800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr6:76261000-76261600	Enhancers	GM12878-XiMat	blood
36	chr6:76264200-76264400	Enhancers	Esophagus	oesophagus
37	chr6:76265400-76266200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:76265400-76266200	Enhancers	Fetal Intestine Large	intestine
39	chr6:76265400-76266600	Enhancers	Fetal Intestine Small	intestine
40	chr6:76265600-76266200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:76265600-76266600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:76265800-76266200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr6:76265800-76266200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:76265800-76266200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:76265800-76266600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:76266000-76266400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:76266600-76266800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:76266800-76267000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:76268400-76268600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:76276000-76276200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links