Variant report

Variant	nsv538317
Chromosome Location	chr6:76287578-76482117
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2031)
CpG islands
(count:1099)
Chromatin interactive
region (count:216)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2031 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:76320480-76320552	K562	blood:	n/a	n/a
2	ARID3A	chr6:76311201-76311902	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:76342477-76343204	K562	blood:	n/a	chr6:76342662-76342678
4	ARID3A	chr6:76339500-76339892	K562	blood:	n/a	n/a
5	ARID3A	chr6:76337921-76337975	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:76322881-76323353	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:76312666-76313021	K562	blood:	n/a	n/a
8	ARID3A	chr6:76457201-76457496	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:76331504-76331869	K562	blood:	n/a	n/a
10	ARID3A	chr6:76458622-76458651	K562	blood:	n/a	n/a
11	ARID3A	chr6:76445315-76446019	HepG2	liver:	n/a	n/a
12	ARID3A	chr6:76383585-76383961	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:76458528-76458682	HepG2	liver:	n/a	n/a
14	ARID3A	chr6:76333004-76333194	K562	blood:	n/a	n/a
15	ARID3A	chr6:76313655-76313921	K562	blood:	n/a	n/a
16	ARID3A	chr6:76315396-76315502	K562	blood:	n/a	n/a
17	ATF1	chr6:76342790-76343022	K562	blood:	n/a	n/a
18	ATF2	chr6:76311636-76312501	GM12878	blood:	n/a	n/a
19	ATF3	chr6:76400719-76401129	HCT-116	colon:	n/a	n/a
20	BACH1	chr6:76312675-76312783	K562	blood:	n/a	n/a
21	BACH1	chr6:76458435-76458631	K562	blood:	n/a	n/a
22	BACH1	chr6:76318040-76318256	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr6:76407134-76407232	K562	blood:	n/a	n/a
24	BACH1	chr6:76459213-76459671	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr6:76311710-76311864	H1-hESC	embryonic stem cell:	n/a	n/a
26	BACH1	chr6:76458387-76458719	H1-hESC	embryonic stem cell:	n/a	n/a
27	BATF	chr6:76468871-76469148	GM12878	blood:	n/a	chr6:76468983-76468994
28	BATF	chr6:76289645-76290038	GM12878	blood:	n/a	n/a
29	BATF	chr6:76453741-76453966	GM12878	blood:	n/a	n/a
30	BCL11A	chr6:76289736-76289977	GM12878	blood:	n/a	n/a
31	BCL11A	chr6:76453638-76454028	GM12878	blood:	n/a	n/a
32	BCL11A	chr6:76453680-76454055	GM12878	blood:	n/a	n/a
33	BCL11A	chr6:76289699-76289966	GM12878	blood:	n/a	n/a
34	BCL3	chr6:76311339-76311837	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
35	BCLAF1	chr6:76311127-76312480	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
36	BCLAF1	chr6:76311198-76312444	GM12878	blood:	n/a	chr6:76311730-76311739 chr6:76311800-76311813 chr6:76311732-76311745 chr6:76311798-76311807
37	BCLAF1	chr6:76289601-76290063	GM12878	blood:	n/a	n/a
38	BHLHE40	chr6:76458636-76459158	GM12878	blood:	n/a	chr6:76459001-76459017
39	BHLHE40	chr6:76311427-76311913	HepG2	liver:	n/a	chr6:76311797-76311813
40	BHLHE40	chr6:76312095-76312309	K562	blood:	n/a	n/a
41	BHLHE40	chr6:76311312-76311822	GM12878	blood:	n/a	chr6:76311797-76311813
42	BHLHE40	chr6:76463949-76464065	HepG2	liver:	n/a	n/a
43	BHLHE40	chr6:76397729-76398031	K562	blood:	n/a	n/a
44	BHLHE40	chr6:76289720-76290070	GM12878	blood:	n/a	n/a
45	BHLHE40	chr6:76311300-76311866	K562	blood:	n/a	chr6:76311797-76311813
46	BHLHE40	chr6:76452022-76452184	HepG2	liver:	n/a	chr6:76452041-76452057
47	BHLHE40	chr6:76312070-76312724	GM12878	blood:	n/a	n/a
48	BHLHE40	chr6:76458636-76459067	K562	blood:	n/a	chr6:76459001-76459017
49	BHLHE40	chr6:76463942-76463968	GM12878	blood:	n/a	n/a
50	BRCA1	chr6:76331729-76331799	Hela-S3	cervix:	n/a	n/a

(count:1099 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:76425457-76425507	PANC-1	pancreas:	n/a
2	chr6:76425457-76425507	PANC-1	pancreas:	n/a
3	chr6:76311636-76311686	SAEC	small airway:	n/a
4	chr6:76425457-76425507	PrEC	prostate:	n/a
5	chr6:76461321-76461371	PANC-1	pancreas:	n/a
6	chr6:76459077-76459127	BJ	skin:	n/a
7	chr6:76311363-76311413	BE2_C	brain:	n/a
8	chr6:76458633-76458683	NB4	blood:	n/a
9	chr6:76312378-76312428	AG09319	gingival:	n/a
10	chr6:76311331-76311381	K562	blood:	n/a
11	chr6:76319793-76319843	AG04450	lung:	fetal
12	chr6:76425457-76425507	NH-A	brain:	n/a
13	chr6:76310551-76310601	HRPEpiC	eye:	n/a
14	chr6:76425457-76425507	HUVEC	blood vessel:	n/a
15	chr6:76311920-76311970	ProgFib	skin:	n/a
16	chr6:76311363-76311413	NB4	blood:	n/a
17	chr6:76311363-76311413	HNPCEpiC	eye:	n/a
18	chr6:76341733-76341783	GM19239	blood:	n/a
19	chr6:76311636-76311686	MCF10A-Er-Src	breast:	n/a
20	chr6:76341733-76341783	MCF-7	breast:	n/a
21	chr6:76456187-76456237	HCT-116	colon:	n/a
22	chr6:76311636-76311686	HL-60	blood:	n/a
23	chr6:76311920-76311970	ECC-1	luminal epithelium:	n/a
24	chr6:76330505-76330555	LNCaP	prostate:	n/a
25	chr6:76458005-76458055	SK-N-SH	brain:	n/a
26	chr6:76315197-76315247	MCF-7	breast:	n/a
27	chr6:76461321-76461371	HCPEpiC	choroid plexus:	n/a
28	chr6:76330505-76330555	H1-hESC	embryonic stem cell:	embryo
29	chr6:76310551-76310601	HCF	heart:	n/a
30	chr6:76311331-76311381	GM06990	blood:	n/a
31	chr6:76311331-76311381	HCF	heart:	n/a
32	chr6:76459511-76459561	BJ	skin:	n/a
33	chr6:76458633-76458683	NHDF-neo	bronchial:	n/a
34	chr6:76311331-76311381	SK-N-MC	brain:	n/a
35	chr6:76461321-76461371	Caco-2	colon:	n/a
36	chr6:76312378-76312428	ovcar-3	ovarian:	n/a
37	chr6:76425457-76425507	AoSMC	blood vessel:	n/a
38	chr6:76311636-76311686	AG10803	skin:	n/a
39	chr6:76311331-76311381	HNPCEpiC	eye:	n/a
40	chr6:76311920-76311970	NT2-D1	testis:	n/a
41	chr6:76461321-76461371	SK-N-SH_RA	brain:	n/a
42	chr6:76425457-76425507	BE2_C	brain:	n/a
43	chr6:76341733-76341783	HCT-116	colon:	n/a
44	chr6:76309300-76309350	AG04450	lung:	fetal
45	chr6:76312378-76312428	HepG2	liver:	n/a
46	chr6:76341733-76341783	Jurkat	blood:	n/a
47	chr6:76315197-76315247	AG04449	skin:	fetal
48	chr6:76315197-76315247	ovcar-3	ovarian:	n/a
49	chr6:76311920-76311970	AG04449	skin:	fetal
50	chr6:76315197-76315247	SK-N-SH_RA	brain:	n/a

(count:216 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr6:76463940..76466517-chr6:76472497..76474287,2	K562	blood:
2	chr6:76478606..76481168-chr6:76482628..76484653,2	MCF-7	breast:
3	chr2:67624427..67625159-chr6:76458926..76459754,2	Hela-S3	cervix:
4	chr6:76443894..76445853-chr6:76451155..76454793,3	MCF-7	breast:
5	chr6:76431586..76433985-chr6:76438066..76440225,2	MCF-7	breast:
6	chr6:76373474..76375579-chr6:76380760..76383330,2	K562	blood:
7	chr6:76286759..76291659-chr6:76308574..76313520,8	K562	blood:
8	chr6:76402029..76404149-chr6:76408590..76410105,2	MCF-7	breast:
9	chr6:76369470..76371755-chr6:76372281..76373933,2	K562	blood:
10	chr20:37554612..37555527-chr6:76311330..76312268,2	Hela-S3	cervix:
11	chr6:74405547..74407236-chr6:76311267..76312799,2	MCF-7	breast:
12	chr6:76404187..76405990-chr6:76505413..76507332,2	MCF-7	breast:
13	chr6:76348810..76350607-chr6:76352555..76355121,2	K562	blood:
14	chr11:93474252..93474772-chr6:76458412..76459090,2	Hela-S3	cervix:
15	chr6:76460418..76462531-chr6:76558690..76560910,2	MCF-7	breast:
16	chr6:76286862..76288767-chr6:76289048..76291040,2	MCF-7	breast:
17	chr6:76330148..76333811-chr6:76341672..76344273,3	K562	blood:
18	chr6:76369769..76371871-chr6:76379242..76380946,2	K562	blood:
19	chr6:76330148..76333811-chr6:76341672..76344273,3	K562	blood:
20	chr6:76426836..76429906-chr6:76458673..76460595,3	MCF-7	breast:
21	chr6:76311042..76312955-chr6:76326997..76330794,3	MCF-7	breast:
22	chr6:76456068..76458008-chr6:76564755..76567247,2	MCF-7	breast:
23	chr6:76423467..76426296-chr6:76461021..76463732,3	MCF-7	breast:
24	chr6:76469142..76471151-chr6:76480358..76482124,2	MCF-7	breast:
25	chr6:76458766..76460644-chr6:76463670..76465363,2	MCF-7	breast:
26	chr6:76313605..76316318-chr6:76324603..76327531,2	MCF-7	breast:
27	chr6:76371815..76374314-chr6:76380785..76382399,2	MCF-7	breast:
28	chr6:76366871..76369155-chr6:76374703..76377343,2	MCF-7	breast:
29	chr6:76446062..76448644-chr6:76456702..76459457,3	MCF-7	breast:
30	chr6:76310342..76312305-chr6:76373129..76377244,3	K562	blood:
31	chr6:76327323..76329622-chr6:76330394..76331981,2	K562	blood:
32	chr6:76316195..76318634-chr6:76459170..76461001,2	K562	blood:
33	chr6:76320020..76322105-chr6:76423785..76425773,2	K562	blood:
34	chr6:76310227..76312452-chr6:76481370..76483085,2	K562	blood:
35	chr6:76424657..76427289-chr6:76428050..76430901,3	MCF-7	breast:
36	chr6:76329104..76331316-chr6:76370800..76373283,2	K562	blood:
37	chr6:76316156..76318537-chr6:76328526..76330839,2	MCF-7	breast:
38	chr6:76312117..76313931-chr6:76346420..76348406,2	K562	blood:
39	chr6:76467679..76469997-chr6:76472807..76474955,2	K562	blood:
40	chr6:76310925..76313590-chr6:76457201..76459634,2	K562	blood:
41	chr6:76413657..76415200-chr6:76420816..76423209,2	MCF-7	breast:
42	chr6:76426476..76430048-chr6:76457436..76461171,5	MCF-7	breast:
43	chr6:76467679..76470814-chr6:76472807..76475124,3	K562	blood:
44	chr6:76373474..76375579-chr6:76380760..76383330,2	K562	blood:
45	chr6:76298381..76301021-chr6:76312234..76315010,2	K562	blood:
46	chr6:76354605..76357480-chr6:76358370..76361189,2	MCF-7	breast:
47	chr6:76369470..76371755-chr6:76372281..76373933,2	K562	blood:
48	chr6:76465017..76467292-chr6:76472497..76474825,2	K562	blood:
49	chr6:76463962..76466709-chr6:76471388..76473486,2	MCF-7	breast:
50	chr6:76338949..76341010-chr6:76342328..76344685,2	MCF-7	breast:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-1	chr6:76362140-76362390	ENSG00000249080
2	lnc-MYO6-7	chr6:76344423-76344772	NONHSAT113624
3	lnc-FILIP1-2	chr6:76320674-76321504	NONHSAT113622
4	lnc-SENP6-4	chr6:76433669-76434665	NONHSAT113631
5	lnc-FILIP1-2	chr6:76320906-76321661	NONHSAT113623
6	lnc-MYO6-6	chr6:76368978-76369123	NONHSAT113627
7	lnc-FILIP1-3	chr6:76364686-76365015	NONHSAT113628
8	lnc-MYO6-6	chr6:76357008-76357517	NONHSAT113627
9	lnc-SENP6-5	chr6:76434955-76435356	NONHSAT113632
10	lnc-MYO6-6	chr6:76372937-76373221	NONHSAT113627
11	lnc-SENP6-6	chr6:76295838-76296177	NONHSAT113620
12	lnc-MYO6-7	chr6:76343366-76343442	NONHSAT113624
13	lnc-MYO6-1	chr6:76359931-76362040	ENSG00000249080

No data

Variant related genes	Relation type
ENSG00000220730	TF binding region
RNU6-1016P	TF binding region
RNU6-1338P	TF binding region
RN7SKP163	TF binding region
SENP6	TF binding region
MYO6	TF binding region
ENSG00000217488	TF binding region
RNU6-155P	TF binding region
ENSG00000220730	CpG island
RNU6-1016P	CpG island
RNU6-1338P	CpG island
RN7SKP163	CpG island
SENP6	CpG island
MYO6	CpG island
ENSG00000217488	CpG island
RNU6-155P	CpG island
ENSG00000112695	chromatin interactions
ENSG00000204120	chromatin interactions
ENSG00000143971	chromatin interactions
ENSG00000267598	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000229862	chromatin interactions
ENSG00000169715	chromatin interactions
ENSG00000123505	chromatin interactions
ENSG00000112697	chromatin interactions
ENSG00000239132	chromatin interactions
ENSG00000217488	chromatin interactions
ENSG00000252498	chromatin interactions
ENSG00000155903	chromatin interactions
ENSG00000164430	chromatin interactions
ENSG00000108854	chromatin interactions
ENSG00000223169	chromatin interactions
ENSG00000001167	chromatin interactions
ENSG00000244265	chromatin interactions
ENSG00000112701	chromatin interactions
ENSG00000181788	chromatin interactions
ENSG00000196586	chromatin interactions
ENSG00000252156	chromatin interactions
ENSG00000101447	chromatin interactions
ENSG00000225793	chromatin interactions
ENSG00000124596	chromatin interactions
ENSG00000100888	chromatin interactions
ENSG00000252137	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000167470	chromatin interactions
ENSG00000156535	chromatin interactions
ENSG00000220730	chromatin interactions
ENSG00000166012	chromatin interactions
ENSG00000231652	chromatin interactions
KRAS	miRNA target sites
NR4A2	miRNA target sites

Extended variants
information (count: 7049 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:7049 , 50 per page) page: 1 2 3 4 5 6 7 ... 141

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548076339	chr6:76287632-76287633	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs559997856	chr6:76287690-76287691	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs371956783	chr6:76287731-76287732	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs571239202	chr6:76287800-76287801	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs117814797	chr6:76287864-76287865	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs551235263	chr6:76287876-76287877	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs569724683	chr6:76287887-76287888	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs376809168	chr6:76287995-76287996	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs181832130	chr6:76288005-76288006	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs115967743	chr6:76288021-76288022	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs186363425	chr6:76288028-76288029	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs552805787	chr6:76288073-76288074	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs550568221	chr6:76288142-76288143	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs571354228	chr6:76288156-76288157	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs373128690	chr6:76288324-76288325	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs558009050	chr6:76288362-76288363	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs191200212	chr6:76288415-76288416	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs543865444	chr6:76288438-76288439	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs182288057	chr6:76288440-76288441	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs374669764	chr6:76288454-76288455	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs146331510	chr6:76288524-76288525	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs560086504	chr6:76288525-76288526	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs139558336	chr6:76288570-76288571	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs545569355	chr6:76288581-76288582	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs149558397	chr6:76288614-76288615	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs187606977	chr6:76288707-76288708	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs550053225	chr6:76288717-76288718	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs191263424	chr6:76288723-76288724	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs566929584	chr6:76288734-76288735	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs369260134	chr6:76288826-76288827	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs9447515	chr6:76288832-76288833	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs9447516	chr6:76288845-76288846	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs72884964	chr6:76288847-76288848	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs9447517	chr6:76288848-76288849	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs188560501	chr6:76288852-76288853	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs9447518	chr6:76288856-76288857	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs9447519	chr6:76288886-76288887	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs9447520	chr6:76288892-76288893	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs2027188	chr6:76288904-76288905	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs373747682	chr6:76288926-76288927	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs557096623	chr6:76288946-76288947	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs376737483	chr6:76288999-76289000	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs192011301	chr6:76289057-76289058	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs184463418	chr6:76289100-76289101	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs115551375	chr6:76289165-76289166	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs541428594	chr6:76289183-76289184	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs566798145	chr6:76289264-76289265	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs553426566	chr6:76289298-76289299	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs578181575	chr6:76289307-76289308	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs199648463	chr6:76289318-76289319	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4842 , 50 per page) page: 1 2 3 4 5 6 7 ... 97

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76281000-76289000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:76289000-76291400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:76289400-76290000	Enhancers	GM12878-XiMat	blood
4	chr6:76289400-76290200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:76289400-76290200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:76289600-76290000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:76290200-76291600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:76290600-76291200	Enhancers	NHDF-Ad	bronchial
9	chr6:76291800-76292000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:76298800-76305600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:76302600-76303200	Enhancers	Fetal Intestine Large	intestine
12	chr6:76303200-76305600	Weak transcription	Fetal Intestine Large	intestine
13	chr6:76305600-76306000	Enhancers	Fetal Intestine Large	intestine
14	chr6:76305600-76306200	Enhancers	Fetal Intestine Small	intestine
15	chr6:76305600-76306800	Enhancers	HepG2	liver
16	chr6:76306000-76310000	Weak transcription	Fetal Intestine Large	intestine
17	chr6:76306200-76309000	Weak transcription	Fetal Intestine Small	intestine
18	chr6:76306600-76306800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:76306600-76307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:76306600-76308200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:76306600-76308200	Enhancers	Colon Smooth Muscle	Colon
22	chr6:76306800-76307600	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:76306800-76307600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr6:76306800-76308000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:76306800-76308200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:76306800-76308200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:76306800-76308400	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:76306800-76310400	Weak transcription	HepG2	liver
29	chr6:76307000-76308200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:76307200-76308200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:76307200-76308200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:76307200-76308600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:76307400-76307600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:76307400-76308400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:76307400-76308400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:76307400-76308400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:76307600-76308000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:76307600-76308600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:76307800-76309000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:76307800-76309200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr6:76308000-76308400	Enhancers	Primary B cells from peripheral blood	blood
42	chr6:76308000-76308600	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:76308000-76308800	Active TSS	Aorta	Aorta
44	chr6:76308000-76308800	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr6:76308000-76309200	Active TSS	Stomach Smooth Muscle	stomach
46	chr6:76308200-76308400	Enhancers	Primary hematopoietic stem cells	blood
47	chr6:76308200-76308400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:76308200-76308400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:76308200-76308400	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr6:76308200-76308400	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links