Variant report

Variant	nsv538744
Chromosome Location	chr7:15138771-15267341
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:15213565..15216408-chr7:15216427..15218516,2	K562	blood:
2	chr7:15238978..15239740-chr7:16110589..16111290,3	K562	blood:
3	chr7:15253710..15255246-chr7:15258463..15260182,2	K562	blood:
4	chr7:15262308..15264487-chr7:15270699..15272942,2	K562	blood:
5	chr7:15213565..15216408-chr7:15216427..15218516,2	K562	blood:
6	chr7:15253710..15255246-chr7:15258463..15260182,2	K562	blood:
7	chr7:15148394..15150106-chr7:15160727..15163235,2	K562	blood:
8	chr6:10529800..10530510-chr7:15146578..15147089,2	MCF-7	breast:
9	chr7:15226823..15229745-chr7:16458349..16461149,2	MCF-7	breast:
10	chr7:15181881..15184605-chr7:15186174..15189124,2	K562	blood:
11	chr7:15148394..15150106-chr7:15160727..15163235,2	K562	blood:
12	chr7:15181881..15184605-chr7:15186174..15189124,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC006035.2-8	chr7:15193488-15193542	NONHSAT119275
2	lnc-AC006035.2-8	chr7:15192805-15192944	NONHSAT119275
3	lnc-AC006035.2-8	chr7:15191535-15191712	NONHSAT119275

No data

Variant related genes	Relation type
ENSG00000214960	chromatin interactions
ENSG00000111846	chromatin interactions

Extended variants
information (count: 4115 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:4115 , 50 per page) page: 1 2 3 4 5 6 7 ... 83

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539141281	chr7:15138778-15138779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs558743745	chr7:15138807-15138808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569278666	chr7:15138839-15138840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74722763	chr7:15138855-15138856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs377188415	chr7:15138857-15138858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs79580360	chr7:15138868-15138869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs574770057	chr7:15138869-15138870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs149823027	chr7:15138886-15138887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs147966717	chr7:15138898-15138899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs117393433	chr7:15138917-15138918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576928004	chr7:15138930-15138931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545892045	chr7:15138940-15138941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562196900	chr7:15138975-15138976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs10226204	chr7:15138990-15138991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs6967535	chr7:15138996-15138997	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs73679409	chr7:15139029-15139030	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs191707404	chr7:15139038-15139039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs374167045	chr7:15139046-15139047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs546947123	chr7:15139096-15139097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs560749000	chr7:15139097-15139098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs377367689	chr7:15139112-15139113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370430012	chr7:15139138-15139139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs115739506	chr7:15139149-15139150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs552687505	chr7:15139226-15139227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147762556	chr7:15139252-15139253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369261250	chr7:15139253-15139254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568436053	chr7:15139255-15139256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs181676642	chr7:15139272-15139273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556295091	chr7:15139397-15139398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs553742532	chr7:15139432-15139433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs576969271	chr7:15139439-15139440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs374078153	chr7:15139441-15139442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs116231490	chr7:15139466-15139467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs17168663	chr7:15139469-15139470	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs575713992	chr7:15139523-15139524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541449520	chr7:15139559-15139560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs186210479	chr7:15139566-15139567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190977257	chr7:15139594-15139595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs540927062	chr7:15139597-15139598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs143474524	chr7:15139612-15139613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs374530536	chr7:15139614-15139615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs552789142	chr7:15139623-15139624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373236535	chr7:15139666-15139667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563949429	chr7:15139693-15139694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563000103	chr7:15139707-15139708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535952161	chr7:15139798-15139799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs10245707	chr7:15139810-15139811	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs11975947	chr7:15139814-15139815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs112494309	chr7:15139818-15139819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs150957073	chr7:15139864-15139865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:236 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15137000-15144800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:15141600-15141800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:15141800-15142800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:15142800-15143000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:15143000-15143800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:15143800-15144200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:15143800-15146400	Enhancers	Fetal Lung	lung
8	chr7:15144000-15144800	Enhancers	Colon Smooth Muscle	Colon
9	chr7:15144400-15144800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:15144800-15145400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr7:15159200-15160000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:15160000-15164000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr7:15162400-15163800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:15162800-15163800	Enhancers	HUVEC	blood vessel
15	chr7:15163000-15163400	Enhancers	Fetal Heart	heart
16	chr7:15163400-15169400	Weak transcription	Fetal Heart	heart
17	chr7:15163600-15164000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:15163800-15164000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:15163800-15164800	Weak transcription	HUVEC	blood vessel
20	chr7:15164000-15164400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:15164000-15164400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr7:15164000-15166000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:15164000-15167800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:15164400-15167000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:15164400-15169200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:15164800-15165000	Enhancers	HUVEC	blood vessel
27	chr7:15165000-15165400	Weak transcription	HUVEC	blood vessel
28	chr7:15165400-15167200	Enhancers	HUVEC	blood vessel
29	chr7:15166000-15166200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:15166200-15167600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:15167000-15167800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:15167200-15168400	Weak transcription	HUVEC	blood vessel
33	chr7:15167600-15167800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:15167600-15168800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr7:15167800-15168600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr7:15167800-15168600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:15167800-15168800	Enhancers	Brain Germinal Matrix	brain
38	chr7:15167800-15171400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:15168400-15169000	Enhancers	Fetal Brain Male	brain
40	chr7:15168400-15171800	Enhancers	HUVEC	blood vessel
41	chr7:15168600-15170000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:15169200-15169400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:15169200-15169400	Enhancers	Placenta Amnion	Placenta Amnion
44	chr7:15169200-15171600	Enhancers	NHEK	skin
45	chr7:15169400-15169600	Enhancers	Fetal Heart	heart
46	chr7:15169400-15170000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:15169400-15170200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:15169400-15171000	Enhancers	Hela-S3	cervix
49	chr7:15169400-15171200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:15169400-15171200	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links