Variant report

Variant	nsv539479
Chromosome Location	chr8:11688534-11732949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2849)
CpG islands
(count:1159)
Chromatin interactive
region (count:70)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2849 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:11720016-11720613	K562	blood:	n/a	n/a
2	ARID3A	chr8:11719967-11720499	HepG2	liver:	n/a	n/a
3	ARID3A	chr8:11711460-11711976	HepG2	liver:	n/a	n/a
4	ARID3A	chr8:11722303-11722739	HepG2	liver:	n/a	n/a
5	ARID3A	chr8:11710564-11710991	HepG2	liver:	n/a	n/a
6	ATF1	chr8:11719934-11720561	K562	blood:	n/a	n/a
7	ATF2	chr8:11718234-11718663	GM12878	blood:	n/a	n/a
8	ATF2	chr8:11704572-11705318	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr8:11716064-11716683	GM12878	blood:	n/a	n/a
10	ATF2	chr8:11718117-11718791	GM12878	blood:	n/a	n/a
11	ATF2	chr8:11724806-11725122	GM12878	blood:	n/a	n/a
12	ATF2	chr8:11724597-11725205	GM12878	blood:	n/a	n/a
13	ATF3	chr8:11711524-11711774	K562	blood:	n/a	chr8:11711746-11711755
14	ATF3	chr8:11711440-11711869	K562	blood:	n/a	chr8:11711746-11711755
15	ATF3	chr8:11725482-11725723	HepG2	liver:	n/a	n/a
16	ATF3	chr8:11725467-11725700	K562	blood:	n/a	n/a
17	ATF3	chr8:11711190-11711884	A549	lung:	n/a	chr8:11711746-11711755
18	ATF3	chr8:11720050-11720523	K562	blood:	n/a	n/a
19	BACH1	chr8:11720086-11720270	K562	blood:	n/a	n/a
20	BACH1	chr8:11729699-11729701	H1-hESC	embryonic stem cell:	n/a	n/a
21	BATF	chr8:11718273-11718716	GM12878	blood:	n/a	chr8:11718530-11718541
22	BATF	chr8:11718298-11718610	GM12878	blood:	n/a	chr8:11718530-11718541
23	BCL11A	chr8:11718308-11718637	GM12878	blood:	n/a	n/a
24	BCL11A	chr8:11716227-11716542	GM12878	blood:	n/a	n/a
25	BCL11A	chr8:11716165-11716612	GM12878	blood:	n/a	n/a
26	BCL11A	chr8:11718244-11718588	GM12878	blood:	n/a	n/a
27	BCL3	chr8:11697919-11698258	K562	blood:	n/a	n/a
28	BCL3	chr8:11700687-11701096	K562	blood:	n/a	n/a
29	BCL3	chr8:11704974-11705270	GM12878	blood:	n/a	n/a
30	BCL3	chr8:11699609-11700117	A549	lung:	n/a	n/a
31	BCL3	chr8:11725383-11725760	GM12878	blood:	n/a	n/a
32	BCL3	chr8:11701138-11705117	K562	blood:	n/a	n/a
33	BCL3	chr8:11706000-11706740	GM12878	blood:	n/a	n/a
34	BCL3	chr8:11725327-11725762	A549	lung:	n/a	n/a
35	BCL3	chr8:11705132-11705635	K562	blood:	n/a	n/a
36	BCLAF1	chr8:11720126-11720531	K562	blood:	n/a	n/a
37	BCLAF1	chr8:11716093-11716697	GM12878	blood:	n/a	n/a
38	BCLAF1	chr8:11725364-11725722	GM12878	blood:	n/a	n/a
39	BCLAF1	chr8:11718183-11718689	GM12878	blood:	n/a	n/a
40	BCLAF1	chr8:11718158-11718703	GM12878	blood:	n/a	n/a
41	BHLHE40	chr8:11732430-11732634	GM12878	blood:	n/a	n/a
42	BHLHE40	chr8:11710506-11711068	HepG2	liver:	n/a	n/a
43	BHLHE40	chr8:11725436-11726052	HepG2	liver:	n/a	n/a
44	BHLHE40	chr8:11702375-11702406	K562	blood:	n/a	n/a
45	BHLHE40	chr8:11720032-11720462	HepG2	liver:	n/a	n/a
46	BHLHE40	chr8:11711404-11711808	HepG2	liver:	n/a	chr8:11711744-11711760
47	BHLHE40	chr8:11706613-11706766	K562	blood:	n/a	n/a
48	BHLHE40	chr8:11724848-11725040	GM12878	blood:	n/a	n/a
49	BHLHE40	chr8:11719951-11720587	K562	blood:	n/a	n/a
50	BHLHE40	chr8:11704848-11705129	K562	blood:	n/a	n/a

(count:1159 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:11717853-11717903	PFSK-1	brain:	n/a
2	chr8:11725306-11725356	AG10803	skin:	n/a
3	chr8:11715284-11715334	NT2-D1	testis:	n/a
4	chr8:11725306-11725356	CMK	blood:	n/a
5	chr8:11717853-11717903	RPTEC	kidney:	n/a
6	chr8:11725104-11725154	H1-hESC	embryonic stem cell:	embryo
7	chr8:11719367-11719417	PANC-1	pancreas:	n/a
8	chr8:11725596-11725646	GM06990	blood:	n/a
9	chr8:11724777-11724827	BE2_C	brain:	n/a
10	chr8:11710911-11710961	Caco-2	colon:	n/a
11	chr8:11725306-11725356	LNCaP	prostate:	n/a
12	chr8:11725104-11725154	NB4	blood:	n/a
13	chr8:11715284-11715334	Jurkat	blood:	n/a
14	chr8:11725943-11725993	BJ	skin:	n/a
15	chr8:11710911-11710961	LNCaP	prostate:	n/a
16	chr8:11715284-11715334	NHBE	bronchial:	n/a
17	chr8:11725492-11725542	MCF-7	breast:	n/a
18	chr8:11725596-11725646	MCF10A-Er-Src	breast:	n/a
19	chr8:11715284-11715334	NHDF-neo	bronchial:	n/a
20	chr8:11724777-11724827	HNPCEpiC	eye:	n/a
21	chr8:11721826-11721876	IMR90	lung:	fetal
22	chr8:11710911-11710961	HUVEC	blood vessel:	n/a
23	chr8:11725104-11725154	PANC-1	pancreas:	n/a
24	chr8:11725943-11725993	ProgFib	skin:	n/a
25	chr8:11719367-11719417	HRPEpiC	eye:	n/a
26	chr8:11723816-11723866	HEK293	kidney:	embryo
27	chr8:11701719-11701769	AG04450	lung:	fetal
28	chr8:11725492-11725542	HCF	heart:	n/a
29	chr8:11710911-11710961	T-47D	breast:	n/a
30	chr8:11725492-11725542	HCM	heart:	n/a
31	chr8:11725599-11725649	AoSMC	blood vessel:	n/a
32	chr8:11717853-11717903	T-47D	breast:	n/a
33	chr8:11725306-11725356	NHDF-neo	bronchial:	n/a
34	chr8:11725306-11725356	HRCEpiC	kidney:	n/a
35	chr8:11725306-11725356	Caco-2	colon:	n/a
36	chr8:11724777-11724827	GM06990	blood:	n/a
37	chr8:11723816-11723866	BE2_C	brain:	n/a
38	chr8:11728558-11728608	HIPEpiC	eye:	n/a
39	chr8:11715284-11715334	Hela-S3	cervix:	n/a
40	chr8:11723816-11723866	PFSK-1	brain:	n/a
41	chr8:11728558-11728608	Hela-S3	cervix:	n/a
42	chr8:11696232-11696282	MCF-7	breast:	n/a
43	chr8:11696232-11696282	HNPCEpiC	eye:	n/a
44	chr8:11725306-11725356	GM12891	blood:	n/a
45	chr8:11710911-11710961	HCT-116	colon:	n/a
46	chr8:11725943-11725993	HL-60	blood:	n/a
47	chr8:11725104-11725154	NHBE	bronchial:	n/a
48	chr8:11721826-11721876	SK-N-SH	brain:	n/a
49	chr8:11726094-11726144	Hela-S3	cervix:	n/a
50	chr8:11725104-11725154	HMEC	breast:	n/a

(count:70 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr8:11626986..11628635-chr8:11724070..11726191,2	K562	blood:
2	chr8:11690076..11692407-chr8:11692416..11694501,3	K562	blood:
3	chr8:11697890..11700465-chr8:11711516..11714369,2	K562	blood:
4	chr8:11710197..11714536-chr8:11724997..11727273,4	K562	blood:
5	chr8:11727352..11730707-chr8:11734493..11737265,3	K562	blood:
6	chr8:11662566..11665636-chr8:11705504..11707081,3	K562	blood:
7	chr8:11660132..11662159-chr8:11687088..11688698,2	MCF-7	breast:
8	chr8:11701923..11705144-chr8:11709953..11712815,3	K562	blood:
9	chr12:90102840..90103619-chr8:11725166..11725791,2	HCT-116	colon:
10	chr8:11708825..11713035-chr8:11718721..11724039,7	MCF-7	breast:
11	chr8:11695667..11699183-chr8:11720606..11722768,3	K562	blood:
12	chr8:11708825..11713035-chr8:11718721..11724039,7	MCF-7	breast:
13	chr8:11709901..11713097-chr8:11718255..11721625,5	MCF-7	breast:
14	chr8:11695946..11697771-chr8:11722616..11724742,2	MCF-7	breast:
15	chr8:11717376..11719253-chr8:11741735..11744320,2	K562	blood:
16	chr8:11689387..11691686-chr8:11696731..11698715,2	K562	blood:
17	chr8:11690076..11692407-chr8:11692416..11694501,3	K562	blood:
18	chr8:11706290..11708186-chr8:11724044..11726922,3	MCF-7	breast:
19	chr8:11724192..11726313-chr8:11753136..11754724,2	MCF-7	breast:
20	chr8:11710836..11712408-chr8:11724380..11726355,2	MCF-7	breast:
21	chr8:11701711..11703998-chr8:11723479..11725596,2	K562	blood:
22	chr8:11706164..11707709-chr8:11709253..11711783,2	K562	blood:
23	chr8:11686947..11689897-chr8:11691622..11693319,2	K562	blood:
24	chr8:11717778..11719934-chr8:11735920..11738113,2	MCF-7	breast:
25	chr8:11709901..11713097-chr8:11718255..11721625,5	MCF-7	breast:
26	chr8:11732515..11734330-chr8:11735926..11737604,2	K562	blood:
27	chr8:11701711..11703998-chr8:11723479..11725596,2	K562	blood:
28	chr11:62608950..62609596-chr8:11725047..11725738,2	HCT-116	colon:
29	chr8:11710201..11712259-chr8:11713212..11714755,2	MCF-7	breast:
30	chr8:11708512..11715317-chr8:11723234..11727095,9	MCF-7	breast:
31	chr8:11710836..11712408-chr8:11724380..11726355,2	MCF-7	breast:
32	chr8:11706290..11708186-chr8:11724044..11726922,3	MCF-7	breast:
33	chr8:11678607..11680636-chr8:11724388..11726584,2	MCF-7	breast:
34	chr8:11689387..11691686-chr8:11696731..11698715,2	K562	blood:
35	chr8:11718857..11721432-chr8:11753489..11755957,2	K562	blood:
36	chr8:11714135..11717431-chr8:11717814..11720890,3	K562	blood:
37	chr8:11728396..11730707-chr8:11735513..11737265,2	K562	blood:
38	chr8:11701610..11705224-chr8:11724505..11726759,3	MCF-7	breast:
39	chr8:11659426..11661474-chr8:11724613..11726870,3	MCF-7	breast:
40	chr8:11699877..11702780-chr8:11758303..11760780,3	K562	blood:
41	chr8:11723128..11726794-chr8:11729764..11731890,4	MCF-7	breast:
42	chr20:58672783..58673686-chr8:11698085..11698795,2	NB4	blood:
43	chr8:11708512..11715317-chr8:11723234..11727095,9	MCF-7	breast:
44	chr8:11683203..11685176-chr8:11688978..11690552,2	K562	blood:
45	chr8:11731939..11733861-chr8:11735868..11738030,2	K562	blood:
46	chr10:124484205..124484883-chr8:11688873..11689373,2	MCF-7	breast:
47	chr8:11664303..11666890-chr8:11705423..11707941,2	MCF-7	breast:
48	chr8:11711601..11714581-chr8:11730061..11732215,2	K562	blood:
49	chr8:11706164..11707709-chr8:11709253..11711783,2	K562	blood:
50	chr8:11724112..11726454-chr8:11732632..11735297,3	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-297N6.4.1-2	chr8:11703663-11703900	ENSG00000269899.1
2	lnc-FDFT1-1	chr8:11701603-11702070	expReg_chr8_457_+

No data

Variant related genes	Relation type
CTSB	TF binding region
ENSG00000269899	TF binding region
CTSB	CpG island
ENSG00000269899	CpG island
ENSG00000154328	chromatin interactions
ENSG00000164733	chromatin interactions
ENSG00000103257	chromatin interactions
ENSG00000070961	chromatin interactions
ENSG00000255144	chromatin interactions
ENSG00000269899	chromatin interactions
ENSG00000079459	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000255046	chromatin interactions

Extended variants
information (count: 3465 )
Associated
traits (count: 141 )

Variant overlapped rSNPs/rCNVs (count:3465 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567543910	chr8:11688593-11688594	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs538158715	chr8:11688605-11688606	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs73549732	chr8:11688607-11688608	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs115347540	chr8:11688619-11688620	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs1052077	chr8:11688640-11688641	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs570556944	chr8:11688649-11688650	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs149299556	chr8:11688655-11688656	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs572924942	chr8:11688658-11688659	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs73549733	chr8:11688676-11688677	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs144568306	chr8:11688711-11688712	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs192202709	chr8:11688723-11688724	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs374193376	chr8:11688725-11688726	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs546576995	chr8:11688728-11688729	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs184103113	chr8:11688737-11688738	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs544519888	chr8:11688754-11688755	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs368068361	chr8:11688755-11688756	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs562742737	chr8:11688759-11688760	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs73549735	chr8:11688760-11688761	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs551586133	chr8:11688774-11688775	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs560067241	chr8:11688795-11688796	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs148453824	chr8:11688812-11688813	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs75141057	chr8:11688831-11688832	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs367860277	chr8:11688832-11688833	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs1296024	chr8:11688836-11688837	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs375855072	chr8:11688848-11688849	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs562288801	chr8:11688880-11688881	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs367871165	chr8:11688881-11688882	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs142720289	chr8:11688887-11688888	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs571644700	chr8:11688893-11688894	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs188705694	chr8:11688897-11688898	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs112343001	chr8:11688956-11688957	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs554395145	chr8:11688960-11688961	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs371651248	chr8:11688981-11688982	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs376586264	chr8:11688983-11688984	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs560329946	chr8:11688994-11688995	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs139572326	chr8:11689009-11689010	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs369577968	chr8:11689016-11689017	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs146977984	chr8:11689029-11689030	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs113265443	chr8:11689036-11689037	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs199509756	chr8:11689054-11689055	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs573699269	chr8:11689059-11689060	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs138035023	chr8:11689068-11689069	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs544192341	chr8:11689073-11689074	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs556178209	chr8:11689077-11689078	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs200992419	chr8:11689097-11689098	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs149474846	chr8:11689101-11689102	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs544972573	chr8:11689117-11689118	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs9205	chr8:11689119-11689120	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs148180939	chr8:11689136-11689137	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs372448616	chr8:11689143-11689144	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:141)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	21811585	CNVD
Colorectal cancer	16774939	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cancer	20164919	CNVD
Honadal dysgenesis	21408189	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2428 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11667000-11711000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:11669400-11708000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:11670000-11689200	Weak transcription	Fetal Heart	heart
4	chr8:11671400-11701400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:11675200-11707000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:11675800-11712600	Strong transcription	Dnd41	blood
7	chr8:11676000-11690600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:11676200-11704800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:11677000-11705200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:11677200-11690600	Strong transcription	HMEC	breast
11	chr8:11677200-11690800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:11677200-11704400	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr8:11677400-11690400	Strong transcription	NHEK	skin
14	chr8:11677600-11688600	Strong transcription	Fetal Intestine Small	intestine
15	chr8:11677600-11691800	Strong transcription	Osteobl	bone
16	chr8:11677600-11702000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:11677600-11702000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:11677600-11703200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:11677600-11708200	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:11677600-11710600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:11677600-11711800	Strong transcription	Fetal Brain Female	brain
22	chr8:11677800-11690600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:11677800-11706600	Strong transcription	NHLF	lung
24	chr8:11678000-11693400	Strong transcription	A549	lung
25	chr8:11678000-11707400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:11678200-11691400	Strong transcription	Fetal Thymus	thymus
27	chr8:11678200-11697800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:11678200-11704000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:11678200-11704400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:11678200-11704600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:11678200-11705200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:11678200-11705200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr8:11678200-11706800	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr8:11678400-11690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:11678400-11692800	Strong transcription	Liver	Liver
36	chr8:11678400-11698000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr8:11678400-11704000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:11678400-11704400	Strong transcription	GM12878-XiMat	blood
39	chr8:11678400-11705600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr8:11678400-11706400	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr8:11678600-11691600	Strong transcription	Placenta	Placenta
42	chr8:11678600-11693800	Weak transcription	Right Atrium	heart
43	chr8:11678600-11705400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:11678600-11708600	Strong transcription	HUVEC	blood vessel
45	chr8:11678800-11697800	Strong transcription	Lung	lung
46	chr8:11679000-11691400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr8:11679000-11702200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:11679000-11705200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:11679000-11715200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:11679200-11689600	Strong transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links