Variant report

Variant	nsv540147
Chromosome Location	chr9:71399922-71800338
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6290)
CpG islands
(count:2692)
Chromatin interactive
region (count:322)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6290 , 50 per page) page: 1 2 3 4 5 6 7 ... 126

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:71598080-71598400	K562	blood:	n/a	n/a
2	ARID3A	chr9:71768528-71769284	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:71642563-71642873	K562	blood:	n/a	n/a
4	ARID3A	chr9:71460000-71460212	K562	blood:	n/a	n/a
5	ARID3A	chr9:71542080-71542315	K562	blood:	n/a	n/a
6	ARID3A	chr9:71719221-71720293	HepG2	liver:	n/a	chr9:71719768-71719784 chr9:71719315-71719331
7	ARID3A	chr9:71431767-71432536	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:71746529-71747015	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:71650444-71651128	HepG2	liver:	n/a	n/a
10	ARID3A	chr9:71735292-71735927	HepG2	liver:	n/a	n/a
11	ARID3A	chr9:71785862-71786328	K562	blood:	n/a	n/a
12	ARID3A	chr9:71788981-71788988	K562	blood:	n/a	n/a
13	ARID3A	chr9:71584469-71584970	HepG2	liver:	n/a	n/a
14	ARID3A	chr9:71701730-71702036	HepG2	liver:	n/a	n/a
15	ARID3A	chr9:71432365-71432517	K562	blood:	n/a	n/a
16	ARID3A	chr9:71651502-71651839	K562	blood:	n/a	n/a
17	ARID3A	chr9:71795418-71795995	HepG2	liver:	n/a	n/a
18	ARID3A	chr9:71584464-71585376	K562	blood:	n/a	n/a
19	ARID3A	chr9:71635426-71635919	K562	blood:	n/a	n/a
20	ARID3A	chr9:71795383-71796025	K562	blood:	n/a	n/a
21	ARID3A	chr9:71785228-71785657	K562	blood:	n/a	n/a
22	ARID3A	chr9:71650526-71650743	K562	blood:	n/a	n/a
23	ARID3A	chr9:71576402-71576900	K562	blood:	n/a	n/a
24	ARID3A	chr9:71634748-71635103	K562	blood:	n/a	n/a
25	ARID3A	chr9:71787032-71787270	HepG2	liver:	n/a	n/a
26	ARID3A	chr9:71631852-71631872	K562	blood:	n/a	n/a
27	ARID3A	chr9:71614594-71614886	HepG2	liver:	n/a	n/a
28	ARID3A	chr9:71783969-71784100	HepG2	liver:	n/a	n/a
29	ARID3A	chr9:71793431-71794296	HepG2	liver:	n/a	n/a
30	ATF1	chr9:71413396-71413615	K562	blood:	n/a	n/a
31	ATF1	chr9:71420516-71420729	K562	blood:	n/a	n/a
32	ATF1	chr9:71576511-71576777	K562	blood:	n/a	n/a
33	ATF1	chr9:71598096-71598406	K562	blood:	n/a	n/a
34	ATF1	chr9:71584518-71584727	K562	blood:	n/a	n/a
35	ATF1	chr9:71785927-71786382	K562	blood:	n/a	n/a
36	ATF1	chr9:71613777-71614153	K562	blood:	n/a	n/a
37	ATF1	chr9:71434023-71434218	K562	blood:	n/a	n/a
38	ATF1	chr9:71634756-71635094	K562	blood:	n/a	n/a
39	ATF1	chr9:71542195-71542403	K562	blood:	n/a	n/a
40	ATF1	chr9:71635543-71635967	K562	blood:	n/a	n/a
41	ATF1	chr9:71408890-71409217	K562	blood:	n/a	n/a
42	ATF1	chr9:71642591-71642873	K562	blood:	n/a	n/a
43	ATF1	chr9:71795567-71795986	K562	blood:	n/a	n/a
44	ATF1	chr9:71590616-71590989	K562	blood:	n/a	n/a
45	ATF2	chr9:71561786-71562440	H1-hESC	embryonic stem cell:	n/a	n/a
46	ATF2	chr9:71532395-71533134	GM12878	blood:	n/a	n/a
47	ATF2	chr9:71737566-71738148	H1-hESC	embryonic stem cell:	n/a	n/a
48	ATF2	chr9:71596689-71597229	GM12878	blood:	n/a	n/a
49	ATF2	chr9:71417493-71418032	GM12878	blood:	n/a	n/a
50	ATF2	chr9:71590514-71590994	GM12878	blood:	n/a	n/a

(count:2692 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:71629130-71629180	K562	blood:	n/a
2	chr9:71736409-71736459	NH-A	brain:	n/a
3	chr9:71651175-71651225	SK-N-SH	brain:	n/a
4	chr9:71735701-71735751	HCPEpiC	choroid plexus:	n/a
5	chr9:71682105-71682155	NB4	blood:	n/a
6	chr9:71789541-71789591	NHBE	bronchial:	n/a
7	chr9:71651331-71651381	MCF10A-Er-Src	breast:	n/a
8	chr9:71628906-71628956	HCT-116	colon:	n/a
9	chr9:71629130-71629180	K562	blood:	n/a
10	chr9:71736409-71736459	NH-A	brain:	n/a
11	chr9:71651175-71651225	SK-N-SH	brain:	n/a
12	chr9:71735701-71735751	HCPEpiC	choroid plexus:	n/a
13	chr9:71682105-71682155	NB4	blood:	n/a
14	chr9:71789541-71789591	NHBE	bronchial:	n/a
15	chr9:71651331-71651381	MCF10A-Er-Src	breast:	n/a
16	chr9:71628906-71628956	HCT-116	colon:	n/a
17	chr9:71650237-71650287	AG04450	lung:	fetal
18	chr9:71732345-71732395	NB4	blood:	n/a
19	chr9:71683936-71683986	A549	lung:	n/a
20	chr9:71713728-71713778	AoSMC	blood vessel:	n/a
21	chr9:71650719-71650769	BJ	skin:	n/a
22	chr9:71735666-71735716	ECC-1	luminal epithelium:	n/a
23	chr9:71651175-71651225	PFSK-1	brain:	n/a
24	chr9:71732345-71732395	Hepatocyte	liver:	n/a
25	chr9:71788759-71788809	K562	blood:	n/a
26	chr9:71650237-71650287	NB4	blood:	n/a
27	chr9:71683936-71683986	NHDF-neo	bronchial:	n/a
28	chr9:71627667-71627717	HepG2	liver:	n/a
29	chr9:71789541-71789591	Jurkat	blood:	n/a
30	chr9:71787778-71787828	GM12878	blood:	n/a
31	chr9:71785587-71785637	GM12891	blood:	n/a
32	chr9:71787778-71787828	RPTEC	kidney:	n/a
33	chr9:71629130-71629180	SKMC	muscle:	n/a
34	chr9:71736999-71737049	HRPEpiC	eye:	n/a
35	chr9:71789653-71789703	HL-60	blood:	n/a
36	chr9:71623401-71623451	CMK	blood:	n/a
37	chr9:71736854-71736904	SKMC	muscle:	n/a
38	chr9:71661107-71661157	LNCaP	prostate:	n/a
39	chr9:71623401-71623451	BJ	skin:	n/a
40	chr9:71682302-71682352	LNCaP	prostate:	n/a
41	chr9:71737258-71737308	HAEpiC	amniotic membrane:	n/a
42	chr9:71685390-71685440	GM19239	blood:	n/a
43	chr9:71787000-71787050	HNPCEpiC	eye:	n/a
44	chr9:71647192-71647242	HRPEpiC	eye:	n/a
45	chr9:71789653-71789703	NH-A	brain:	n/a
46	chr9:71661107-71661157	Hepatocyte	liver:	n/a
47	chr9:71736409-71736459	PrEC	prostate:	n/a
48	chr9:71792936-71792986	HMEC	breast:	n/a
49	chr9:71789653-71789703	SK-N-SH	brain:	n/a
50	chr9:71623401-71623451	HPAEpiC	pulmonary alveolar:	n/a

(count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Distal block	Cell Line	Cell type
1	chr9:71735454..71738183-chr9:71753651..71758025,4	MCF-7	breast:
2	chr9:71392572..71394227-chr9:71414871..71416644,2	K562	blood:
3	chr9:71704381..71705131-chr9:71714234..71715231,2	MCF-7	breast:
4	chr9:71720044..71724145-chr9:71733178..71738087,7	MCF-7	breast:
5	chr9:71382779..71384863-chr9:71399277..71400843,2	MCF-7	breast:
6	chr9:71699452..71701501-chr9:71735733..71737488,2	MCF-7	breast:
7	chr9:71730545..71732525-chr9:71797822..71800476,2	K562	blood:
8	chr9:71199108..71199619-chr9:71642191..71643182,2	K562	blood:
9	chr9:71649378..71651041-chr9:71654267..71655823,2	MCF-7	breast:
10	chr9:71798131..71799806-chr9:71811511..71814165,2	MCF-7	breast:
11	chr9:71468331..71470715-chr9:71473638..71476429,2	K562	blood:
12	chr9:71594449..71596709-chr9:71598735..71600800,2	K562	blood:
13	chr9:71794571..71798394-chr9:71798897..71802534,4	K562	blood:
14	chr9:71451909..71453715-chr9:71457092..71459544,2	K562	blood:
15	chr9:71732215..71735155-chr9:71735593..71737924,2	MCF-7	breast:
16	chr9:71785836..71791669-chr9:71792328..71797551,11	K562	blood:
17	chr9:71398863..71402159-chr9:71407140..71410574,3	K562	blood:
18	chr9:71642108..71644566-chr9:71646491..71648725,2	K562	blood:
19	chr9:71649857..71652024-chr9:71744170..71747063,2	MCF-7	breast:
20	chr9:71587606..71589215-chr9:71606682..71608603,2	MCF-7	breast:
21	chr9:71681954..71683717-chr9:71735663..71737181,2	MCF-7	breast:
22	chr9:71736483..71737290-chr9:71808170..71808758,2	MCF-7	breast:
23	chr9:71646520..71648758-chr9:71649618..71651156,2	MCF-7	breast:
24	chr1:146555490..146556430-chr9:71736325..71736974,2	Hela-S3	cervix:
25	chr9:71727081..71728601-chr9:71737166..71739059,2	MCF-7	breast:
26	chr9:71789625..71792443-chr9:71836331..71838562,2	K562	blood:
27	chr9:71437717..71440700-chr9:71443079..71445018,2	K562	blood:
28	chr9:71546260..71548319-chr9:71558934..71561181,2	K562	blood:
29	chr9:71791754..71794017-chr9:71958010..71960976,2	K562	blood:
30	chr9:71576569..71578561-chr9:71582492..71584226,2	MCF-7	breast:
31	chr9:71666774..71669833-chr9:71734752..71737934,3	MCF-7	breast:
32	chr9:71790152..71792261-chr9:71797735..71799818,2	MCF-7	breast:
33	chr9:71398863..71402159-chr9:71407140..71410574,3	K562	blood:
34	chr9:71483920..71486082-chr9:71487169..71489754,2	K562	blood:
35	chr9:71468331..71470715-chr9:71473638..71476429,2	K562	blood:
36	chr9:71779511..71782336-chr9:71782342..71784212,2	MCF-7	breast:
37	chr9:71605095..71607601-chr9:71608551..71611179,3	K562	blood:
38	chr9:71649801..71651906-chr9:71729690..71731454,2	MCF-7	breast:
39	chr9:71651712..71654573-chr9:71656499..71659593,3	K562	blood:
40	chr11:62607625..62610617-chr9:71419682..71421202,4	K562	blood:
41	chr9:71751405..71753557-chr9:71754610..71757893,3	MCF-7	breast:
42	chr9:71573438..71576022-chr9:71576543..71579524,3	K562	blood:
43	chr3:73159867..73160571-chr9:71420682..71421682,2	Hela-S3	cervix:
44	chr9:71774601..71776858-chr9:71777097..71779223,2	K562	blood:
45	chr9:71704381..71705131-chr9:71714234..71715231,2	MCF-7	breast:
46	chr9:71197374..71198367-chr9:71614324..71614982,2	MCF-7	breast:
47	chr9:71199104..71200136-chr9:71459624..71460607,5	MCF-7	breast:
48	chr9:71513862..71516503-chr9:71520061..71522924,2	MCF-7	breast:
49	chr9:71612099..71614210-chr9:71616099..71618792,2	MCF-7	breast:
50	chr17:41463871..41465691-chr9:71419702..71421202,3	K562	blood:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKACG-2	chr9:71780235-71782388	ENSG00000250944
2	lnc-FAM122A-1	chr9:71400999-71401076	NONHSAT131753
3	lnc-TJP2-1	chr9:71736209-71736281	ENSG00000227410.1
4	lnc-PRKACG-1	chr9:71568004-71569861	ENSG00000249652
5	lnc-PRKACG-3	chr9:71437319-71437564	ENSG00000236733.1
6	lnc-PRKACG-1	chr9:71570856-71572127	NONHSAT131759
7	lnc-PRKACG-3	chr9:71439046-71439206	ENSG00000236733.1
8	lnc-PRKACG-4	chr9:71625289-71625403	ucscGeneNc_uc004ahk_2
9	lnc-PRKACG-3	chr9:71458083-71458191	ENSG00000236733.1
10	lnc-PRKACG-5	chr9:71563250-71563521	expReg_chr9_3063_-
11	lnc-TJP2-1	chr9:71736400-71737148	ENSG00000227410.1
12	lnc-PRKACG-1	chr9:71571942-71572127	ENSG00000249652
13	lnc-PRKACG-2	chr9:71785572-71785971	ENSG00000250944
14	lnc-PRKACG-1	chr9:71590580-71590757	ENSG00000249652
15	lnc-PRKACG-4	chr9:71624143-71625000	ucscGeneNc_uc004ahk_2
16	lnc-PRKACG-1	chr9:71590580-71590735	NONHSAT131759

No data

Variant related genes	Relation type
PRKACG	TF binding region
TJP2	TF binding region
FXN	TF binding region
ENSG00000236998	TF binding region
ENSG00000236733	TF binding region
ENSG00000270236	TF binding region
RNU6-820P	TF binding region
PRKACG	CpG island
TJP2	CpG island
FXN	CpG island
ENSG00000236998	CpG island
ENSG00000236733	CpG island
ENSG00000270236	CpG island
RNU6-820P	CpG island
ENSG00000165060	chromatin interactions
ENSG00000001167	chromatin interactions
ENSG00000187866	chromatin interactions
ENSG00000272434	chromatin interactions
ENSG00000178035	chromatin interactions
ENSG00000223247	chromatin interactions
ENSG00000107242	chromatin interactions
ENSG00000075914	chromatin interactions
ENSG00000270236	chromatin interactions
ENSG00000236998	chromatin interactions
ENSG00000132849	chromatin interactions
ENSG00000119139	chromatin interactions
ENSG00000136159	chromatin interactions
ENSG00000126216	chromatin interactions
ENSG00000136143	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000163812	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000236733	chromatin interactions
ENSG00000165059	chromatin interactions
ENSG00000133316	chromatin interactions
FLOT1	miRNA target sites
NFIB	miRNA target sites
APITD1	miRNA target sites
TRIP12	miRNA target sites
SMAD7	miRNA target sites

Extended variants
information (count: 14641 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:14641 , 50 per page) page: 1 2 3 4 5 6 7 ... 293

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575349483	chr9:71399960-71399961	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs117656842	chr9:71400034-71400035	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs571863654	chr9:71400040-71400041	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs544208266	chr9:71400079-71400080	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs547471814	chr9:71400095-71400096	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs564038350	chr9:71400127-71400128	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs147023446	chr9:71400137-71400138	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs536224156	chr9:71400177-71400178	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs554244870	chr9:71400193-71400194	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs192145390	chr9:71400217-71400218	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs376684545	chr9:71400222-71400223	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs558817750	chr9:71400227-71400228	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs577625077	chr9:71400246-71400247	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs199860669	chr9:71400316-71400317	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs11143715	chr9:71400331-71400332	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs560340626	chr9:71400385-71400386	Weak transcription Strong transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs553822746	chr9:71400419-71400420	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs35427113	chr9:71400423-71400424	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs184648156	chr9:71400529-71400530	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs72717927	chr9:71400551-71400552	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs553530463	chr9:71400614-71400615	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs561118543	chr9:71400634-71400635	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs531781684	chr9:71400665-71400666	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs543708899	chr9:71400743-71400744	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs565584941	chr9:71400846-71400847	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs116913048	chr9:71400915-71400916	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs548030696	chr9:71400929-71400930	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs566303590	chr9:71400970-71400971	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs138293832	chr9:71401058-71401059	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs58431487	chr9:71401066-71401067	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs7864097	chr9:71401142-71401143	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs569503492	chr9:71401143-71401144	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs564992046	chr9:71401145-71401146	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs59687481	chr9:71401198-71401199	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs531618013	chr9:71401212-71401213	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs370262427	chr9:71401217-71401218	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs188619596	chr9:71401245-71401246	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs80108759	chr9:71401251-71401252	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs184206054	chr9:71401269-71401270	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs534632058	chr9:71401290-71401291	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs11143717	chr9:71401335-71401336	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs189480897	chr9:71401341-71401342	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs181956041	chr9:71401373-71401374	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs551719288	chr9:71401378-71401379	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs571660384	chr9:71401393-71401394	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs11309118	chr9:71401399-71401400	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs398010787	chr9:71401406-71401407	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs201538545	chr9:71401410-71401411	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs547574540	chr9:71401411-71401412	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs200372666	chr9:71401416-71401417	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	17899364	CNVD
Mantle cell lymphoma	19029149	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Epilepsy	22083797	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:8385 , 50 per page) page: 1 2 3 4 5 6 7 ... 168

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71395600-71400200	Flanking Active TSS	Brain Germinal Matrix	brain
2	chr9:71395800-71400200	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:71396000-71400400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:71396000-71402400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:71396000-71403400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:71396000-71408200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:71396200-71400600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:71396200-71400800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr9:71396200-71400800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr9:71396200-71400800	Enhancers	Brain Hippocampus Middle	brain
11	chr9:71396200-71400800	Enhancers	Fetal Heart	heart
12	chr9:71396200-71401000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr9:71396200-71401000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:71396200-71409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:71396400-71400200	Enhancers	Colon Smooth Muscle	Colon
16	chr9:71396600-71400400	Enhancers	Thymus	Thymus
17	chr9:71397200-71400000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:71397200-71400200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:71397200-71401000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:71397200-71402200	Weak transcription	A549	lung
21	chr9:71397200-71403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:71397200-71404200	Weak transcription	Esophagus	oesophagus
23	chr9:71397200-71409600	Weak transcription	Colonic Mucosa	Colon
24	chr9:71397200-71417400	Weak transcription	Lung	lung
25	chr9:71397800-71401400	Weak transcription	Placenta	Placenta
26	chr9:71397800-71408000	Weak transcription	Gastric	stomach
27	chr9:71398000-71400000	Enhancers	Brain Anterior Caudate	brain
28	chr9:71398000-71400000	Weak transcription	Osteobl	bone
29	chr9:71398000-71400400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr9:71398200-71400000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:71398200-71400000	Enhancers	Duodenum Mucosa	Duodenum
32	chr9:71398200-71400400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr9:71398400-71400200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr9:71398600-71404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:71398600-71405400	Strong transcription	Primary B cells from cord blood	blood
36	chr9:71398800-71400000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:71398800-71401000	Enhancers	Rectal Smooth Muscle	rectum
38	chr9:71398800-71401800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:71398800-71401800	Weak transcription	Aorta	Aorta
40	chr9:71398800-71406000	Weak transcription	Spleen	Spleen
41	chr9:71398800-71408000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:71398800-71409800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:71399000-71400000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:71399000-71400000	Weak transcription	Left Ventricle	heart
45	chr9:71399000-71400000	Weak transcription	Right Ventricle	heart
46	chr9:71399000-71400000	Weak transcription	K562	blood
47	chr9:71399000-71400200	Enhancers	Brain Angular Gyrus	brain
48	chr9:71399000-71400200	Weak transcription	HUVEC	blood vessel
49	chr9:71399000-71400800	Enhancers	Adipose Nuclei	Adipose
50	chr9:71399000-71400800	Enhancers	Skeletal Muscle Female	skeletal muscle

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