Variant report

Variant	nsv540364
Chromosome Location	chr9:140447860-140514807
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4326)
CpG islands
(count:2200)
Chromatin interactive
region (count:191)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4326 , 50 per page) page: 1 2 3 4 5 6 7 ... 87

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:140476704-140476869	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:140514701-140514718	K562	blood:	n/a	n/a
3	ARID3A	chr9:140476767-140476847	K562	blood:	n/a	n/a
4	ARID3A	chr9:140455523-140455741	HepG2	liver:	n/a	n/a
5	ARID3A	chr9:140473269-140473545	K562	blood:	n/a	n/a
6	ARID3A	chr9:140473271-140473827	HepG2	liver:	n/a	n/a
7	ARID3A	chr9:140512995-140513194	K562	blood:	n/a	n/a
8	ATF1	chr9:140469909-140470724	K562	blood:	n/a	n/a
9	ATF1	chr9:140485031-140485339	K562	blood:	n/a	n/a
10	ATF1	chr9:140512908-140513272	K562	blood:	n/a	n/a
11	ATF2	chr9:140473015-140473621	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr9:140473133-140473657	GM12878	blood:	n/a	n/a
13	ATF2	chr9:140512599-140513361	GM12878	blood:	n/a	n/a
14	ATF2	chr9:140513019-140513356	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr9:140473265-140473580	GM12878	blood:	n/a	n/a
16	ATF2	chr9:140512882-140513291	GM12878	blood:	n/a	n/a
17	ATF2	chr9:140512846-140513342	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF3	chr9:140473254-140473601	K562	blood:	n/a	n/a
19	ATF3	chr9:140473135-140473716	A549	lung:	n/a	n/a
20	ATF3	chr9:140513263-140513470	GM12878	blood:	n/a	chr9:140513400-140513409
21	ATF3	chr9:140512941-140513477	K562	blood:	n/a	chr9:140513400-140513409
22	ATF3	chr9:140513089-140513438	A549	lung:	n/a	chr9:140513400-140513409
23	ATF3	chr9:140513171-140513459	H1-hESC	embryonic stem cell:	n/a	chr9:140513400-140513409
24	ATF3	chr9:140506242-140506580	K562	blood:	n/a	n/a
25	ATF3	chr9:140506272-140506563	K562	blood:	n/a	n/a
26	ATF3	chr9:140513192-140513485	HepG2	liver:	n/a	chr9:140513400-140513409
27	ATF3	chr9:140499555-140499816	K562	blood:	n/a	chr9:140499631-140499640
28	ATF3	chr9:140473293-140473650	K562	blood:	n/a	n/a
29	ATF3	chr9:140512666-140513485	A549	lung:	n/a	chr9:140513400-140513409
30	ATF3	chr9:140513079-140513492	K562	blood:	n/a	chr9:140513400-140513409
31	ATF3	chr9:140473017-140473719	A549	lung:	n/a	chr9:140473065-140473074
32	ATF3	chr9:140500314-140500576	K562	blood:	n/a	n/a
33	BACH1	chr9:140506296-140506570	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr9:140473308-140473703	H1-hESC	embryonic stem cell:	n/a	n/a
35	BACH1	chr9:140512354-140512455	K562	blood:	n/a	n/a
36	BACH1	chr9:140485179-140485711	H1-hESC	embryonic stem cell:	n/a	n/a
37	BACH1	chr9:140474840-140475003	K562	blood:	n/a	n/a
38	BATF	chr9:140453668-140453847	GM12878	blood:	n/a	n/a
39	BATF	chr9:140473252-140473530	GM12878	blood:	n/a	n/a
40	BCL11A	chr9:140473285-140473555	GM12878	blood:	n/a	n/a
41	BCL3	chr9:140473114-140473744	A549	lung:	n/a	n/a
42	BCL3	chr9:140506032-140508286	A549	lung:	n/a	n/a
43	BCL3	chr9:140473015-140473655	GM12878	blood:	n/a	chr9:140473056-140473069
44	BCL3	chr9:140512082-140513429	A549	lung:	n/a	n/a
45	BCL3	chr9:140505934-140508793	A549	lung:	n/a	n/a
46	BCL3	chr9:140512432-140513462	GM12878	blood:	n/a	n/a
47	BCL3	chr9:140512554-140513408	A549	lung:	n/a	n/a
48	BCL3	chr9:140472964-140473771	A549	lung:	n/a	chr9:140473056-140473069
49	BCLAF1	chr9:140473010-140473659	GM12878	blood:	n/a	chr9:140473056-140473069
50	BCLAF1	chr9:140472999-140473658	K562	blood:	n/a	chr9:140473056-140473069

(count:2200 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140501305-140501355	Caco-2	colon:	n/a
2	chr9:140473680-140473730	ECC-1	luminal epithelium:	n/a
3	chr9:140477134-140477184	HRCEpiC	kidney:	n/a
4	chr9:140500680-140500730	CMK	blood:	n/a
5	chr9:140501305-140501355	Caco-2	colon:	n/a
6	chr9:140473680-140473730	ECC-1	luminal epithelium:	n/a
7	chr9:140477134-140477184	HRCEpiC	kidney:	n/a
8	chr9:140500680-140500730	CMK	blood:	n/a
9	chr9:140499397-140499447	PANC-1	pancreas:	n/a
10	chr9:140499623-140499673	ovcar-3	ovarian:	n/a
11	chr9:140473704-140473754	GM19239	blood:	n/a
12	chr9:140485720-140485770	GM19239	blood:	n/a
13	chr9:140469108-140469158	Jurkat	blood:	n/a
14	chr9:140502926-140502976	HCT-116	colon:	n/a
15	chr9:140512513-140512563	HNPCEpiC	eye:	n/a
16	chr9:140514393-140514443	HL-60	blood:	n/a
17	chr9:140473184-140473234	SK-N-SH	brain:	n/a
18	chr9:140501305-140501355	AG09309	skin:	n/a
19	chr9:140471399-140471449	HCPEpiC	choroid plexus:	n/a
20	chr9:140469108-140469158	A549	lung:	n/a
21	chr9:140476961-140477011	HepG2	liver:	n/a
22	chr9:140499397-140499447	NT2-D1	testis:	n/a
23	chr9:140484847-140484897	HRCEpiC	kidney:	n/a
24	chr9:140485720-140485770	Hela-S3	cervix:	n/a
25	chr9:140471399-140471449	LNCaP	prostate:	n/a
26	chr9:140500813-140500863	AG10803	skin:	n/a
27	chr9:140449460-140449510	GM19239	blood:	n/a
28	chr9:140512815-140512865	AG09309	skin:	n/a
29	chr9:140485720-140485770	H1-hESC	embryonic stem cell:	embryo
30	chr9:140473680-140473730	AoSMC	blood vessel:	n/a
31	chr9:140513113-140513163	HRCEpiC	kidney:	n/a
32	chr9:140513113-140513163	NHDF-neo	bronchial:	n/a
33	chr9:140501305-140501355	NH-A	brain:	n/a
34	chr9:140473184-140473234	GM12892	blood:	n/a
35	chr9:140473184-140473234	HAEpiC	amniotic membrane:	n/a
36	chr9:140502926-140502976	A549	lung:	n/a
37	chr9:140473606-140473656	MCF-7	breast:	n/a
38	chr9:140484977-140485027	AG09309	skin:	n/a
39	chr9:140481498-140481548	HCF	heart:	n/a
40	chr9:140484220-140484270	A549	lung:	n/a
41	chr9:140502926-140502976	NHBE	bronchial:	n/a
42	chr9:140473875-140473925	SK-N-SH_RA	brain:	n/a
43	chr9:140473704-140473754	NHDF-neo	bronchial:	n/a
44	chr9:140514016-140514066	RPTEC	kidney:	n/a
45	chr9:140485596-140485646	HL-60	blood:	n/a
46	chr9:140449460-140449510	MCF10A-Er-Src	breast:	n/a
47	chr9:140500813-140500863	SK-N-SH	brain:	n/a
48	chr9:140501305-140501355	BJ	skin:	n/a
49	chr9:140510480-140510530	T-47D	breast:	n/a
50	chr9:140487898-140487948	AG04450	lung:	fetal

(count:191 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr9:140477211..140479524-chr9:140496943..140498868,3	K562	blood:
2	chr9:140480405..140490432-chr9:140494944..140502746,26	K562	blood:
3	chr9:140456633..140458761-chr9:140463562..140466881,4	K562	blood:
4	chr9:140487365..140489362-chr9:140508586..140511499,3	K562	blood:
5	chr9:140431100..140433802-chr9:140474645..140476543,2	K562	blood:
6	chr16:30537615..30538179-chr9:140506214..140507038,2	Hela-S3	cervix:
7	chr9:140457953..140460745-chr9:140471921..140474546,2	K562	blood:
8	chr17:73775349..73776145-chr9:140506201..140506865,3	Hela-S3	cervix:
9	chr9:140487521..140489708-chr9:140504969..140507591,2	K562	blood:
10	chr9:140487600..140490866-chr9:140491246..140493751,4	MCF-7	breast:
11	chr9:140491452..140494377-chr9:140498511..140500095,2	K562	blood:
12	chr9:140135182..140137272-chr9:140472466..140474673,2	K562	blood:
13	chr9:140480405..140490432-chr9:140494944..140502746,26	K562	blood:
14	chr9:140446439..140449718-chr9:140469897..140473461,3	K562	blood:
15	chr9:140473638..140477283-chr9:140490504..140494912,4	K562	blood:
16	chr9:140448822..140451446-chr9:140457626..140459240,2	K562	blood:
17	chr9:140445810..140448101-chr9:140449501..140452314,4	K562	blood:
18	chr14:36295481..36295998-chr9:140513118..140513972,2	Hela-S3	cervix:
19	chr9:140470139..140471923-chr9:140487419..140488929,2	MCF-7	breast:
20	chr9:140511122..140512699-chr9:140559780..140561959,2	MCF-7	breast:
21	chr9:140445084..140447863-chr9:140480393..140482885,2	MCF-7	breast:
22	chr9:140473011..140477060-chr9:140511720..140517022,6	K562	blood:
23	chr9:140467532..140470216-chr9:140512251..140515096,2	MCF-7	breast:
24	chr9:128002978..128003976-chr9:140484864..140485791,2	Hela-S3	cervix:
25	chr9:140464239..140468548-chr9:140468875..140474646,9	K562	blood:
26	chr9:140205840..140207870-chr9:140446473..140449405,2	MCF-7	breast:
27	chr14:67826020..67826820-chr9:140484636..140485558,2	Hela-S3	cervix:
28	chr9:140395969..140398056-chr9:140445670..140447895,2	K562	blood:
29	chr9:140193137..140197903-chr9:140443164..140449787,14	MCF-7	breast:
30	chr9:140352080..140354787-chr9:140444624..140448715,3	MCF-7	breast:
31	chr9:140439204..140441132-chr9:140473629..140475589,2	MCF-7	breast:
32	chr9:140475531..140477283-chr9:140490504..140492982,2	K562	blood:
33	chr9:140464984..140466631-chr9:140468308..140471115,2	MCF-7	breast:
34	chr9:140450468..140452580-chr9:140456810..140458829,2	MCF-7	breast:
35	chr9:140482066..140484246-chr9:140508462..140511181,2	K562	blood:
36	chr9:140456633..140458761-chr9:140463562..140466881,4	K562	blood:
37	chr9:140117969..140119690-chr9:140505138..140507974,2	MCF-7	breast:
38	chr9:140444557..140448587-chr9:140470804..140473699,6	MCF-7	breast:
39	chr9:140447426..140450339-chr9:140645965..140648548,2	K562	blood:
40	chr19:48281795..48283367-chr9:140445657..140447919,2	MCF-7	breast:
41	chr9:140513993..140515601-chr9:140519538..140521041,2	K562	blood:
42	chr9:140483336..140485023-chr9:140489350..140491463,2	MCF-7	breast:
43	chr9:140197647..140199759-chr9:140465038..140466657,2	MCF-7	breast:
44	chr9:140470600..140473358-chr9:140498484..140501413,2	K562	blood:
45	chr9:140470600..140473358-chr9:140498484..140501413,2	K562	blood:
46	chr17:1619677..1620447-chr9:140505862..140506714,2	Hela-S3	cervix:
47	chr9:140445810..140448101-chr9:140449501..140452314,4	K562	blood:
48	chr9:140481185..140483242-chr9:140565190..140566987,2	K562	blood:
49	chr9:140485234..140487017-chr9:140490927..140493336,2	MCF-7	breast:
50	chr9:140470852..140475352-chr9:140511735..140515041,9	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARRDC1-1	chr9:140477241-140479475	NONHSAT135743

No data

Variant related genes	Relation type
ZMYND19	TF binding region
PNPLA7	TF binding region
ARRDC1	TF binding region
EHMT1	TF binding region
C9orf37	TF binding region
DPH7	TF binding region
ZMYND19	CpG island
PNPLA7	CpG island
ARRDC1	CpG island
EHMT1	CpG island
C9orf37	CpG island
DPH7	CpG island
ENSG00000134001	chromatin interactions
ENSG00000257028	chromatin interactions
ENSG00000167716	chromatin interactions
ENSG00000197070	chromatin interactions
ENSG00000182154	chromatin interactions
ENSG00000258938	chromatin interactions
ENSG00000176101	chromatin interactions
ENSG00000177239	chromatin interactions
ENSG00000176623	chromatin interactions
ENSG00000181090	chromatin interactions
ENSG00000188229	chromatin interactions
ENSG00000198961	chromatin interactions
ENSG00000263933	chromatin interactions
ENSG00000100554	chromatin interactions
ENSG00000044574	chromatin interactions
ENSG00000006125	chromatin interactions
ENSG00000259332	chromatin interactions
ENSG00000258498	chromatin interactions
ENSG00000148399	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000130653	chromatin interactions
ENSG00000113594	chromatin interactions
ENSG00000165802	chromatin interactions
ENSG00000168496	chromatin interactions
ENSG00000168209	chromatin interactions
ENSG00000134824	chromatin interactions
ENSG00000197191	chromatin interactions
ENSG00000100916	chromatin interactions
ENSG00000173653	chromatin interactions
ENSG00000260806	chromatin interactions
ENSG00000239705	chromatin interactions
ENSG00000180953	chromatin interactions
ENSG00000203993	chromatin interactions
ENSG00000101144	chromatin interactions
ENSG00000207601	chromatin interactions
ENSG00000133858	chromatin interactions
ENSG00000176248	chromatin interactions
ENSG00000245080	chromatin interactions
ENSG00000169957	chromatin interactions
ENSG00000203987	chromatin interactions
ENSG00000198113	chromatin interactions
ENSG00000178980	chromatin interactions
ENSG00000188986	chromatin interactions
ENSG00000141556	chromatin interactions
ENSG00000259642	chromatin interactions
ENSG00000179094	chromatin interactions
ENSG00000226308	chromatin interactions
ENSG00000090060	chromatin interactions
ENSG00000134825	chromatin interactions
ENSG00000144580	chromatin interactions
ENSG00000244968	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000198435	chromatin interactions
ENSG00000165724	chromatin interactions
ENSG00000268996	chromatin interactions

Extended variants
information (count: 2974 )
Associated
traits (count: 20 )

Variant overlapped rSNPs/rCNVs (count:2974 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574466926	chr9:140447903-140447904	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
2	rs368003369	chr9:140447941-140447942	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
3	rs112626983	chr9:140447943-140447944	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
4	rs553709061	chr9:140447957-140447958	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
5	rs577234674	chr9:140447972-140447973	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
6	rs546086900	chr9:140448008-140448009	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
7	rs375101939	chr9:140448044-140448045	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
8	rs76087300	chr9:140448063-140448064	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
9	rs146863706	chr9:140448066-140448067	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
10	rs527733569	chr9:140448067-140448068	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
11	rs541996567	chr9:140448070-140448071	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
12	rs562073146	chr9:140448096-140448097	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
13	rs188750846	chr9:140448127-140448128	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
14	rs192128524	chr9:140448136-140448137	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
15	rs570992040	chr9:140448144-140448145	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
16	rs572470803	chr9:140448145-140448146	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
17	rs547496344	chr9:140448155-140448156	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs570478141	chr9:140448163-140448164	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs533453463	chr9:140448165-140448166	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs550016717	chr9:140448210-140448211	Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs551303341	chr9:140448329-140448330	Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs371815394	chr9:140448330-140448331	Weak transcription Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs374871557	chr9:140448364-140448365	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs112710483	chr9:140448369-140448370	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs71885794	chr9:140448370-140448371	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs4962247	chr9:140448407-140448408	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs140675320	chr9:140448408-140448409	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs555913203	chr9:140448420-140448421	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs568093542	chr9:140448424-140448425	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs533859995	chr9:140448432-140448433	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs11137128	chr9:140448450-140448451	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs553821576	chr9:140448456-140448457	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs576868984	chr9:140448478-140448479	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs373303218	chr9:140448513-140448514	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs545810002	chr9:140448514-140448515	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs556536594	chr9:140448522-140448523	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs372747877	chr9:140448566-140448567	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs576387409	chr9:140448574-140448575	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs541683165	chr9:140448597-140448598	Weak transcription Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs569838921	chr9:140448627-140448628	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
41	rs386739684	chr9:140448654-140448655	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
42	rs373189724	chr9:140448655-140448656	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
43	rs11137129	chr9:140448679-140448680	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
44	rs75595001	chr9:140448725-140448726	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
45	rs527798083	chr9:140448752-140448753	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs541474320	chr9:140448815-140448816	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs144364846	chr9:140448817-140448818	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs145333007	chr9:140448820-140448821	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs368917665	chr9:140448824-140448825	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs111306763	chr9:140448860-140448861	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:20)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:4525 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140446800-140459800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:140447000-140449200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr9:140447000-140449600	Weak transcription	Aorta	Aorta
4	chr9:140447000-140450400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:140447000-140464200	Weak transcription	Fetal Kidney	kidney
6	chr9:140447200-140448000	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr9:140447200-140448000	Weak transcription	Fetal Brain Female	brain
8	chr9:140447200-140448400	Weak transcription	Fetal Intestine Large	intestine
9	chr9:140447200-140448800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:140447200-140449000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:140447200-140449000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:140447200-140449200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:140447200-140449200	Weak transcription	Brain Anterior Caudate	brain
14	chr9:140447200-140449200	Weak transcription	Hela-S3	cervix
15	chr9:140447200-140449400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:140447200-140449400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:140447200-140449400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:140447200-140449400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:140447200-140449400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:140447200-140449400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:140447200-140449400	Weak transcription	Brain Angular Gyrus	brain
22	chr9:140447200-140449400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:140447200-140449400	Weak transcription	Brain Substantia Nigra	brain
24	chr9:140447200-140449400	Weak transcription	Esophagus	oesophagus
25	chr9:140447200-140449400	Weak transcription	Ovary	ovary
26	chr9:140447200-140449400	Weak transcription	HSMMtube	muscle
27	chr9:140447200-140449400	Weak transcription	NHDF-Ad	bronchial
28	chr9:140447200-140449600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:140447200-140449600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:140447200-140449600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:140447200-140449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:140447200-140449600	Weak transcription	Brain Germinal Matrix	brain
33	chr9:140447200-140449600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:140447200-140449800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:140447200-140449800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:140447200-140449800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:140447200-140450800	Weak transcription	Fetal Lung	lung
38	chr9:140447200-140452600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:140447200-140458200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr9:140447200-140458200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:140447200-140459400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:140447200-140466400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:140447200-140470200	Weak transcription	Stomach Mucosa	stomach
44	chr9:140447200-140471800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:140447400-140448000	Strong transcription	Primary T cells from cord blood	blood
46	chr9:140447400-140448000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr9:140447400-140448000	Genic enhancers	Rectal Mucosa Donor 29	rectum
48	chr9:140447400-140448000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
49	chr9:140447400-140448000	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr9:140447400-140448000	Enhancers	HepG2	liver

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