Variant report

Variant	nsv540419
Chromosome Location	chr10:1801877-2036191
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1910694..1913328-chr10:1934835..1936567,2	MCF-7	breast:
2	chr10:1886106..1888077-chr10:1890790..1892501,2	K562	blood:
3	chr10:2012536..2015084-chr10:2016782..2018463,2	K562	blood:
4	chr10:1828605..1831299-chr10:1832923..1834570,2	K562	blood:
5	chr10:1910694..1913328-chr10:1934835..1936567,2	MCF-7	breast:
6	chr10:1939990..1942897-chr10:2131855..2134296,2	K562	blood:
7	chr10:1886106..1888077-chr10:1890790..1892501,2	K562	blood:
8	chr10:1832964..1835158-chr10:1836619..1838496,2	K562	blood:
9	chr10:2016251..2018453-chr10:2018949..2021607,2	K562	blood:
10	chr10:1855465..1858020-chr10:1858610..1861239,2	K562	blood:
11	chr10:1828290..1831579-chr10:1832166..1834591,3	K562	blood:
12	chr10:1832964..1835158-chr10:1836619..1838496,2	K562	blood:
13	chr10:1855465..1858020-chr10:1858610..1861239,2	K562	blood:
14	chr10:2026960..2027790-chr11:74514864..74515669,2	MCF-7	breast:
15	chr10:1828605..1831299-chr10:1832923..1834570,2	K562	blood:
16	chr10:2016251..2018453-chr10:2018949..2021607,2	K562	blood:
17	chr10:1842245..1844057-chr10:1846999..1848882,2	K562	blood:
18	chr10:1828290..1831579-chr10:1832166..1834591,3	K562	blood:
19	chr10:2012536..2015084-chr10:2016782..2018463,2	K562	blood:
20	chr10:1842245..1844057-chr10:1846999..1848882,2	K562	blood:
21	chr10:1892660..1894538-chr10:1897061..1899093,2	K562	blood:
22	chr10:1892660..1894538-chr10:1897061..1899093,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADARB2-8	chr10:1801967-1802165	NONHSAT010937
2	lnc-ADARB2-8	chr10:1814073-1814432	NONHSAT010937
3	lnc-ADARB2-9	chr10:2012857-2013330	NONHSAT010938
4	lnc-ADARB2-9	chr10:2009321-2009510	NONHSAT010938

No data

Extended variants
information (count: 6949 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:6949 , 50 per page) page: 1 2 3 4 5 6 7 ... 139

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142650490	chr10:1801986-1801987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs556400721	chr10:1802052-1802053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs576279392	chr10:1802058-1802059	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs146518504	chr10:1802059-1802060	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs140506723	chr10:1802068-1802069	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs34070265	chr10:1802082-1802083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs186289105	chr10:1802083-1802084	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs11250776	chr10:1802125-1802126	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs370827578	chr10:1802130-1802131	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs370241241	chr10:1804035-1804036	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs533346436	chr10:1804074-1804075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs544023467	chr10:1804094-1804095	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs149943180	chr10:1804096-1804097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs529014215	chr10:1804105-1804106	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs548958242	chr10:1804143-1804144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs565685584	chr10:1804150-1804151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs182972647	chr10:1804161-1804162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs551378373	chr10:1804239-1804240	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs79271325	chr10:1804279-1804280	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs536816002	chr10:1804300-1804301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs557133388	chr10:1804317-1804318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs570009775	chr10:1804351-1804352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs535557117	chr10:1804378-1804379	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs555487500	chr10:1804392-1804393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs572098133	chr10:1804448-1804449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs187876587	chr10:1804482-1804483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs561162128	chr10:1804483-1804484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs578213744	chr10:1804492-1804493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs538227617	chr10:1804511-1804512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs529818232	chr10:1804520-1804521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs192947738	chr10:1804531-1804532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs528953286	chr10:1804550-1804551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs184999726	chr10:1804560-1804561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs559532415	chr10:1804564-1804565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs528078765	chr10:1804577-1804578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs17156884	chr10:1804579-1804580	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs564996794	chr10:1804580-1804581	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs530841419	chr10:1804615-1804616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs146027894	chr10:1804624-1804625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567120579	chr10:1804629-1804630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536081561	chr10:1804657-1804658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549048663	chr10:1804688-1804689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs151091053	chr10:1804690-1804691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565862921	chr10:1804748-1804749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532192402	chr10:1804776-1804777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs534682709	chr10:1804790-1804791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558538615	chr10:1804850-1804851	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs189077691	chr10:1804925-1804926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs552193202	chr10:1804930-1804931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs537752026	chr10:1804980-1804981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:357 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1804000-1804200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:1804000-1804600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:1804600-1806200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:1804800-1805000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:1808200-1808800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:1808600-1853400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:1808800-1814600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:1814600-1816000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:1815000-1815600	Active TSS	Adipose Nuclei	Adipose
10	chr10:1816000-1816600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:1816000-1818400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:1816000-1818600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:1816200-1817600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:1816400-1816600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:1816600-1817600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:1816600-1817800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:1817000-1817400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:1817400-1818200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:1817600-1818000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:1817600-1818200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr10:1817800-1818600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr10:1818200-1819200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:1818400-1819000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:1818600-1825400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:1820200-1821200	Enhancers	Fetal Brain Male	brain
26	chr10:1820800-1821200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
27	chr10:1820800-1822400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:1821400-1821600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
29	chr10:1822400-1827600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:1824600-1825000	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr10:1825200-1825400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:1825200-1825400	Enhancers	Gastric	stomach
33	chr10:1827200-1828200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:1827600-1828200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:1827600-1828600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:1827600-1829000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:1827800-1829000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr10:1828000-1828200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr10:1828000-1828200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:1828000-1828400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr10:1828000-1828800	Enhancers	Liver	Liver
42	chr10:1828800-1829000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:1828800-1829000	Bivalent Enhancer	Fetal Brain Male	brain
44	chr10:1829000-1833000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:1830600-1830800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr10:1833000-1833400	Enhancers	Spleen	Spleen
47	chr10:1833200-1833400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:1833400-1836800	Weak transcription	Spleen	Spleen
49	chr10:1836400-1836800	Enhancers	Fetal Lung	lung
50	chr10:1836800-1837000	ZNF genes & repeats	Spleen	Spleen

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