Variant report

Variant	nsv540472
Chromosome Location	chr10:5133561-5284334
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1460)
CpG islands
(count:855)
Chromatin interactive
region (count:63)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1460 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:5147856-5147891	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:5239083-5239264	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:5237741-5238762	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:5136891-5137133	K562	blood:	n/a	n/a
5	ARID3A	chr10:5189270-5191011	HepG2	liver:	n/a	n/a
6	ARID3A	chr10:5275365-5275665	HepG2	liver:	n/a	n/a
7	ARID3A	chr10:5236523-5236713	HepG2	liver:	n/a	n/a
8	ARID3A	chr10:5138000-5138153	HepG2	liver:	n/a	n/a
9	ARID3A	chr10:5276009-5276456	HepG2	liver:	n/a	n/a
10	ARID3A	chr10:5136259-5137212	HepG2	liver:	n/a	n/a
11	ARID3A	chr10:5261272-5261624	HepG2	liver:	n/a	n/a
12	ATF1	chr10:5276143-5276340	K562	blood:	n/a	n/a
13	ATF3	chr10:5136661-5137163	K562	blood:	n/a	n/a
14	ATF3	chr10:5136385-5137238	A549	lung:	n/a	n/a
15	ATF3	chr10:5189307-5189866	A549	lung:	n/a	n/a
16	ATF3	chr10:5190304-5190995	A549	lung:	n/a	n/a
17	ATF3	chr10:5207727-5207953	K562	blood:	n/a	n/a
18	BACH1	chr10:5136593-5136915	K562	blood:	n/a	chr10:5136819-5136833
19	BCL3	chr10:5189224-5190092	A549	lung:	n/a	n/a
20	BCL3	chr10:5136379-5137271	A549	lung:	n/a	chr10:5136770-5136779
21	BCL3	chr10:5189111-5191215	A549	lung:	n/a	n/a
22	BCL3	chr10:5237721-5238466	A549	lung:	n/a	n/a
23	BCL3	chr10:5149846-5152451	A549	lung:	n/a	chr10:5151173-5151180 chr10:5151748-5151757
24	BCL3	chr10:5190290-5191005	A549	lung:	n/a	n/a
25	BCL3	chr10:5149405-5152719	A549	lung:	n/a	chr10:5151173-5151180 chr10:5151748-5151757
26	BCL3	chr10:5141308-5142213	A549	lung:	n/a	n/a
27	BCL3	chr10:5134993-5138735	A549	lung:	n/a	chr10:5137586-5137595 chr10:5136770-5136779
28	BHLHE40	chr10:5276097-5276402	HepG2	liver:	n/a	n/a
29	BHLHE40	chr10:5207857-5208008	K562	blood:	n/a	n/a
30	BHLHE40	chr10:5190346-5190928	HepG2	liver:	n/a	n/a
31	BHLHE40	chr10:5185410-5185563	HepG2	liver:	n/a	n/a
32	BRCA1	chr10:5136453-5137624	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr10:5136812-5137013	HepG2	liver:	n/a	n/a
34	CBX3	chr10:5253743-5253974	K562	blood:	n/a	n/a
35	CBX3	chr10:5178725-5179069	K562	blood:	n/a	n/a
36	CBX3	chr10:5136690-5137127	K562	blood:	n/a	n/a
37	CBX3	chr10:5207656-5208172	HCT-116	colon:	n/a	n/a
38	CBX3	chr10:5207666-5208060	K562	blood:	n/a	n/a
39	CBX3	chr10:5207663-5208074	K562	blood:	n/a	n/a
40	CBX3	chr10:5178698-5179012	K562	blood:	n/a	n/a
41	CBX3	chr10:5136392-5137166	K562	blood:	n/a	n/a
42	CBX3	chr10:5136765-5137213	HCT-116	colon:	n/a	n/a
43	CBX3	chr10:5252304-5252616	K562	blood:	n/a	n/a
44	CBX3	chr10:5207589-5208043	HCT-116	colon:	n/a	n/a
45	CBX3	chr10:5178706-5179040	HCT-116	colon:	n/a	n/a
46	CEBPB	chr10:5276021-5276478	HepG2	liver:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
47	CEBPB	chr10:5139884-5139952	A549	lung:	n/a	n/a
48	CEBPB	chr10:5245825-5245991	K562	blood:	n/a	chr10:5245947-5245960 chr10:5245947-5245958
49	CEBPB	chr10:5189390-5189820	A549	lung:	n/a	n/a
50	CEBPB	chr10:5136394-5137276	A549	lung:	n/a	n/a

(count:855 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:5227312-5227362	NHDF-neo	bronchial:	n/a
2	chr10:5227312-5227362	NHDF-neo	bronchial:	n/a
3	chr10:5227162-5227212	Hela-S3	cervix:	n/a
4	chr10:5203419-5203469	HL-60	blood:	n/a
5	chr10:5136782-5136832	HCPEpiC	choroid plexus:	n/a
6	chr10:5135453-5135503	AG09319	gingival:	n/a
7	chr10:5227162-5227212	AG04450	lung:	fetal
8	chr10:5136782-5136832	Hepatocyte	liver:	n/a
9	chr10:5136782-5136832	AG09309	skin:	n/a
10	chr10:5227757-5227807	H1-hESC	embryonic stem cell:	embryo
11	chr10:5237881-5237931	A549	lung:	n/a
12	chr10:5227162-5227212	LNCaP	prostate:	n/a
13	chr10:5237853-5237903	NHDF-neo	bronchial:	n/a
14	chr10:5227162-5227212	HL-60	blood:	n/a
15	chr10:5260740-5260790	NB4	blood:	n/a
16	chr10:5237881-5237931	NHBE	bronchial:	n/a
17	chr10:5237853-5237903	AG10803	skin:	n/a
18	chr10:5237869-5237919	SK-N-SH	brain:	n/a
19	chr10:5237881-5237931	AG04449	skin:	fetal
20	chr10:5227312-5227362	HUVEC	blood vessel:	n/a
21	chr10:5227312-5227362	GM19239	blood:	n/a
22	chr10:5246625-5246675	AG10803	skin:	n/a
23	chr10:5149799-5149849	CMK	blood:	n/a
24	chr10:5237853-5237903	CMK	blood:	n/a
25	chr10:5149799-5149849	U87	brain:	n/a
26	chr10:5203419-5203469	ProgFib	skin:	n/a
27	chr10:5237881-5237931	MCF10A-Er-Src	breast:	n/a
28	chr10:5238881-5238931	SK-N-MC	brain:	n/a
29	chr10:5136782-5136832	AG10803	skin:	n/a
30	chr10:5136782-5136832	NB4	blood:	n/a
31	chr10:5227757-5227807	PrEC	prostate:	n/a
32	chr10:5227162-5227212	AG10803	skin:	n/a
33	chr10:5227757-5227807	SK-N-SH	brain:	n/a
34	chr10:5227162-5227212	HAEpiC	amniotic membrane:	n/a
35	chr10:5237869-5237919	SAEC	small airway:	n/a
36	chr10:5246625-5246675	BE2_C	brain:	n/a
37	chr10:5135453-5135503	U87	brain:	n/a
38	chr10:5238881-5238931	GM06990	blood:	n/a
39	chr10:5227757-5227807	HRPEpiC	eye:	n/a
40	chr10:5246625-5246675	MCF10A-Er-Src	breast:	n/a
41	chr10:5246625-5246675	NT2-D1	testis:	n/a
42	chr10:5237881-5237931	HRCEpiC	kidney:	n/a
43	chr10:5227162-5227212	Caco-2	colon:	n/a
44	chr10:5237853-5237903	HNPCEpiC	eye:	n/a
45	chr10:5237881-5237931	HEK293	kidney:	embryo
46	chr10:5203419-5203469	GM12878	blood:	n/a
47	chr10:5260740-5260790	MCF10A-Er-Src	breast:	n/a
48	chr10:5227162-5227212	BE2_C	brain:	n/a
49	chr10:5237853-5237903	A549	lung:	n/a
50	chr10:5227757-5227807	MCF10A-Er-Src	breast:	n/a

(count:63 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:5247043..5249924-chr10:5250707..5254146,4	K562	blood:
2	chr10:5135730..5138906-chr10:5144094..5147673,3	K562	blood:
3	chr10:5198281..5200177-chr10:5228677..5230787,2	K562	blood:
4	chr10:5124077..5126424-chr10:5132088..5134931,2	K562	blood:
5	chr10:5193912..5196444-chr10:5202827..5204457,2	K562	blood:
6	chr10:5136589..5138613-chr10:5158907..5161668,2	MCF-7	breast:
7	chr10:5163399..5166048-chr10:5166871..5170286,3	K562	blood:
8	chr10:5149764..5151896-chr10:5189814..5192281,2	MCF-7	breast:
9	chr10:5225688..5227346-chr10:5233053..5235554,2	MCF-7	breast:
10	chr10:5227828..5229662-chr10:5232988..5235057,2	K562	blood:
11	chr10:5241329..5242148-chr10:5325053..5325709,2	MCF-7	breast:
12	chr10:5135730..5137727-chr10:5144800..5147673,2	K562	blood:
13	chr10:5060824..5061816-chr10:5136872..5137424,2	MCF-7	breast:
14	chr10:5254857..5257683-chr10:5259686..5261466,3	K562	blood:
15	chr10:5159415..5162131-chr10:5167591..5169595,2	MCF-7	breast:
16	chr10:5256183..5258752-chr10:5259686..5261941,2	K562	blood:
17	chr10:5171829..5174408-chr10:5176222..5177928,2	MCF-7	breast:
18	chr10:5138883..5141588-chr10:5142729..5145007,2	K562	blood:
19	chr10:5239744..5241358-chr10:5244602..5246718,2	K562	blood:
20	chr10:5250240..5252491-chr10:5252736..5256514,3	K562	blood:
21	chr10:5169411..5171944-chr10:5173509..5175691,2	K562	blood:
22	chr10:5140565..5143325-chr10:5148088..5150883,2	MCF-7	breast:
23	chr10:4867516..4869900-chr10:5135201..5137283,2	K562	blood:
24	chr10:5227828..5229662-chr10:5232988..5235057,2	K562	blood:
25	chr10:5210740..5212996-chr10:5319959..5322251,2	MCF-7	breast:
26	chr10:5256183..5258752-chr10:5259686..5261941,2	K562	blood:
27	chr10:5140998..5143202-chr10:5149820..5152620,2	K562	blood:
28	chr10:5169411..5171944-chr10:5173509..5175691,2	K562	blood:
29	chr10:5135013..5137947-chr10:5149855..5151840,2	MCF-7	breast:
30	chr10:5159415..5162131-chr10:5167591..5169595,2	MCF-7	breast:
31	chr10:5157749..5160543-chr10:5164093..5166584,2	MCF-7	breast:
32	chr10:4891149..4892494-chr10:5136639..5137645,6	MCF-7	breast:
33	chr10:5248069..5249924-chr10:5250712..5252871,2	K562	blood:
34	chr10:5082218..5083019-chr10:5136925..5137462,2	MCF-7	breast:
35	chr10:5196320..5198098-chr10:5207185..5208709,2	MCF-7	breast:
36	chr10:5228162..5230153-chr10:5232988..5235199,2	K562	blood:
37	chr10:5119351..5122041-chr10:5135538..5138283,2	MCF-7	breast:
38	chr10:5135730..5137727-chr10:5144800..5147673,2	K562	blood:
39	chr10:5189042..5190566-chr10:5324451..5326870,2	MCF-7	breast:
40	chr10:5132364..5134075-chr10:5134147..5137113,2	MCF-7	breast:
41	chr10:5138883..5141588-chr10:5142729..5145007,2	K562	blood:
42	chr10:5239744..5241358-chr10:5244602..5246718,2	K562	blood:
43	chr10:5157749..5160543-chr10:5164093..5166584,2	MCF-7	breast:
44	chr10:5135730..5138479-chr10:5140412..5142462,2	K562	blood:
45	chr10:5139751..5141653-chr10:5142229..5144051,2	K562	blood:
46	chr10:5193912..5196444-chr10:5202827..5204457,2	K562	blood:
47	chr10:5254857..5257683-chr10:5259686..5261466,3	K562	blood:
48	chr10:5228162..5230153-chr10:5232988..5235199,2	K562	blood:
49	chr10:5250240..5252491-chr10:5252736..5256514,3	K562	blood:
50	chr10:5198281..5200177-chr10:5228677..5230787,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1C4-3	chr10:5266321-5266555	NONHSAT011143
2	lnc-AKR1C4-2	chr10:5237425-5237538	NONHSAT011140
3	lnc-AKR1C4-2	chr10:5238192-5238885	NONHSAT011140
4	lnc-AKR1C4-1	chr10:5276321-5276555	XLOC_008363
5	lnc-AKR1C3-5	chr10:5249132-5249705	NONHSAT011142
6	lnc-AKR1C4-1	chr10:5276321-5276556	ENSG00000231039.2
7	lnc-AKR1CL1-2	chr10:5192082-5192149	ucscGeneNc_uc009xhz_1
8	lnc-AKR1CL1-2	chr10:5186655-5187952	ucscGeneNc_uc009xhz_1
9	lnc-AKR1CL1-2	chr10:5189836-5190001	ucscGeneNc_uc009xhz_1

No data

Variant related genes	Relation type
AKR1C3	TF binding region
ENSG00000251909	TF binding region
AKR1C4	TF binding region
AKR1C5P	TF binding region
AKR1CL1	TF binding region
ENSG00000231039	TF binding region
ENSG00000239142	TF binding region
ENSG00000228291	TF binding region
AKR1C3	CpG island
ENSG00000251909	CpG island
AKR1C4	CpG island
AKR1C5P	CpG island
AKR1CL1	CpG island
ENSG00000231039	CpG island
ENSG00000239142	CpG island
ENSG00000228291	CpG island
ENSG00000196326	chromatin interactions
ENSG00000228291	chromatin interactions
ENSG00000225418	chromatin interactions
ENSG00000196139	chromatin interactions
ENSG00000239142	chromatin interactions
ENSG00000165568	chromatin interactions

Extended variants
information (count: 7763 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:7763 , 50 per page) page: 1 2 3 4 5 6 7 ... 156

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189869522	chr10:5133598-5133599	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs72774009	chr10:5133624-5133625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs558492282	chr10:5133630-5133631	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs573230763	chr10:5133679-5133680	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs540619134	chr10:5133685-5133686	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs74550949	chr10:5133691-5133692	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs550637175	chr10:5133698-5133699	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs529364399	chr10:5133700-5133701	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs544397733	chr10:5133767-5133768	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs576527886	chr10:5133823-5133824	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs1937849	chr10:5133839-5133840	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs367563359	chr10:5133863-5133864	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs182444445	chr10:5133865-5133866	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs186300814	chr10:5133883-5133884	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs372339853	chr10:5133890-5133891	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs72774010	chr10:5133895-5133896	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs367765781	chr10:5133898-5133899	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs78240731	chr10:5133903-5133904	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs567751608	chr10:5133916-5133917	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs535498672	chr10:5133938-5133939	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs556802172	chr10:5133948-5133949	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs569385402	chr10:5133979-5133980	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs150264506	chr10:5133982-5133983	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs532666922	chr10:5133990-5133991	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs558427004	chr10:5134002-5134003	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs573572921	chr10:5134008-5134009	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs370910460	chr10:5134013-5134014	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs1937848	chr10:5134043-5134044	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs189856451	chr10:5134051-5134052	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs560124089	chr10:5134126-5134127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs138947591	chr10:5134136-5134137	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs544650202	chr10:5134159-5134160	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs562853274	chr10:5134190-5134191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs529183679	chr10:5134210-5134211	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs545590617	chr10:5134225-5134226	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs149393606	chr10:5134236-5134237	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs528355171	chr10:5134240-5134241	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs546504725	chr10:5134241-5134242	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs200930668	chr10:5134256-5134257	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs528885018	chr10:5134293-5134294	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs375146620	chr10:5134310-5134311	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs182284196	chr10:5134393-5134394	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs568847300	chr10:5134395-5134396	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs11252934	chr10:5134416-5134417	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs185858435	chr10:5134426-5134427	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs372687476	chr10:5134454-5134455	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs191362305	chr10:5134461-5134462	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs145536486	chr10:5134465-5134466	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs1937847	chr10:5134511-5134512	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs183556662	chr10:5134535-5134536	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Cancer	21129771	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
lymphocytic leukemia	21291569	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Ependymoma	20639864	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:769 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5131800-5133600	Enhancers	NHEK	skin
2	chr10:5132200-5133600	Enhancers	HMEC	breast
3	chr10:5132200-5136200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:5132400-5135800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:5132400-5136000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:5132600-5134600	Weak transcription	Stomach Mucosa	stomach
7	chr10:5132800-5135600	Weak transcription	HepG2	liver
8	chr10:5133400-5133600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:5133400-5134200	Weak transcription	A549	lung
10	chr10:5133400-5136200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:5133600-5135200	Weak transcription	HMEC	breast
12	chr10:5133600-5135200	Weak transcription	NHEK	skin
13	chr10:5133600-5135600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:5134200-5134800	ZNF genes & repeats	A549	lung
15	chr10:5134600-5134800	Enhancers	Stomach Mucosa	stomach
16	chr10:5134800-5135200	Weak transcription	Stomach Mucosa	stomach
17	chr10:5134800-5135400	Flanking Active TSS	A549	lung
18	chr10:5135200-5135400	Enhancers	Pancreas	Pancrea
19	chr10:5135200-5135400	Enhancers	Stomach Mucosa	stomach
20	chr10:5135200-5135800	Enhancers	Fetal Intestine Large	intestine
21	chr10:5135200-5135800	Enhancers	Fetal Intestine Small	intestine
22	chr10:5135200-5136000	Enhancers	HMEC	breast
23	chr10:5135200-5136200	Enhancers	Liver	Liver
24	chr10:5135200-5136400	Enhancers	NHEK	skin
25	chr10:5135400-5136600	Weak transcription	Stomach Mucosa	stomach
26	chr10:5135400-5138000	Active TSS	A549	lung
27	chr10:5135600-5135800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:5135600-5136200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:5135600-5136200	Enhancers	HepG2	liver
30	chr10:5135800-5136200	Weak transcription	Fetal Intestine Large	intestine
31	chr10:5135800-5136200	Weak transcription	Fetal Intestine Small	intestine
32	chr10:5135800-5136200	Enhancers	Hela-S3	cervix
33	chr10:5135800-5136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:5135800-5138400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:5136000-5136200	Weak transcription	HMEC	breast
36	chr10:5136000-5136400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr10:5136000-5139400	Active TSS	Duodenum Mucosa	Duodenum
38	chr10:5136200-5136400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:5136200-5136400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:5136200-5136400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:5136200-5136400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:5136200-5136400	Enhancers	Adipose Nuclei	Adipose
43	chr10:5136200-5136400	Flanking Active TSS	Liver	Liver
44	chr10:5136200-5136400	Enhancers	HUVEC	blood vessel
45	chr10:5136200-5136400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:5136200-5136600	Enhancers	Fetal Intestine Large	intestine
47	chr10:5136200-5136600	Enhancers	Fetal Intestine Small	intestine
48	chr10:5136200-5136600	Active TSS	HepG2	liver
49	chr10:5136200-5137600	Active TSS	HMEC	breast
50	chr10:5136200-5138000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links