Variant report

Variant	nsv540507
Chromosome Location	chr10:19461947-19810770
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:19674771-19675173	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:19603428-19603923	HepG2	liver:	n/a	n/a
3	ATF1	chr10:19792017-19792188	K562	blood:	n/a	n/a
4	ATF1	chr10:19798150-19798313	K562	blood:	n/a	n/a
5	BACH1	chr10:19590996-19591316	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr10:19591069-19591317	K562	blood:	n/a	n/a
7	BACH1	chr10:19777970-19778068	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr10:19523717-19523813	H1-hESC	embryonic stem cell:	n/a	n/a
9	BATF	chr10:19807634-19807887	GM12878	blood:	n/a	chr10:19807691-19807699
10	BCL11A	chr10:19807647-19807851	GM12878	blood:	n/a	n/a
11	BRCA1	chr10:19676411-19676542	Hela-S3	cervix:	n/a	n/a
12	CCNT2	chr10:19695758-19696077	K562	blood:	n/a	n/a
13	CEBPB	chr10:19721069-19721224	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr10:19787872-19788258	MCF-7	breast:	n/a	chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106
15	CEBPB	chr10:19621293-19621574	ECC-1	luminal epithelium:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
16	CEBPB	chr10:19703654-19703971	HepG2	liver:	n/a	chr10:19703745-19703758 chr10:19703799-19703810 chr10:19703801-19703810 chr10:19703800-19703811 chr10:19703747-19703758 chr10:19703747-19703758
17	CEBPB	chr10:19617601-19617911	A549	lung:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
18	CEBPB	chr10:19787938-19788228	IMR90	lung:	n/a	chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106
19	CEBPB	chr10:19617025-19617162	A549	lung:	n/a	chr10:19617045-19617054 chr10:19617043-19617054
20	CEBPB	chr10:19617567-19617931	IMR90	lung:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
21	CEBPB	chr10:19710725-19711045	IMR90	lung:	n/a	chr10:19710892-19710903
22	CEBPB	chr10:19721050-19721310	IMR90	lung:	n/a	chr10:19721276-19721289 chr10:19721289-19721302 chr10:19721289-19721300 chr10:19721254-19721267 chr10:19721289-19721302
23	CEBPB	chr10:19617562-19617902	MCF-7	breast:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
24	CEBPB	chr10:19721727-19722058	IMR90	lung:	n/a	chr10:19721890-19721907 chr10:19721888-19721905
25	CEBPB	chr10:19710721-19710987	H1-hESC	embryonic stem cell:	n/a	chr10:19710892-19710903
26	CEBPB	chr10:19498334-19498682	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr10:19625503-19625733	HepG2	liver:	n/a	chr10:19625623-19625634
28	CEBPB	chr10:19737930-19737982	K562	blood:	n/a	chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954
29	CEBPB	chr10:19787923-19788214	A549	lung:	n/a	chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106
30	CEBPB	chr10:19621253-19621585	MCF-7	breast:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
31	CEBPB	chr10:19781460-19782153	HepG2	liver:	n/a	chr10:19781628-19781639
32	CEBPB	chr10:19737802-19737993	HepG2	liver:	n/a	chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954
33	CEBPB	chr10:19648171-19648434	HepG2	liver:	n/a	chr10:19648298-19648311 chr10:19648299-19648310
34	CEBPB	chr10:19481040-19481301	IMR90	lung:	n/a	chr10:19481196-19481207
35	CEBPB	chr10:19498249-19498750	MCF-7	breast:	n/a	n/a
36	CEBPB	chr10:19787930-19788238	HepG2	liver:	n/a	chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106
37	CEBPB	chr10:19653229-19653328	IMR90	lung:	n/a	chr10:19653266-19653279 chr10:19653266-19653279 chr10:19653268-19653279 chr10:19653266-19653279 chr10:19653268-19653279
38	CEBPB	chr10:19617561-19617954	Hela-S3	cervix:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
39	CEBPB	chr10:19787873-19788271	MCF-7	breast:	n/a	chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106
40	CEBPB	chr10:19621255-19621616	A549	lung:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
41	CEBPB	chr10:19617522-19618040	MCF-7	breast:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
42	CEBPB	chr10:19621307-19621498	HepG2	liver:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
43	CEBPB	chr10:19621251-19621616	Hela-S3	cervix:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
44	CEBPB	chr10:19703706-19703978	IMR90	lung:	n/a	chr10:19703745-19703758 chr10:19703799-19703810 chr10:19703801-19703810 chr10:19703800-19703811 chr10:19703747-19703758 chr10:19703747-19703758
45	CEBPB	chr10:19674771-19675146	HepG2	liver:	n/a	chr10:19674953-19674964
46	CEBPB	chr10:19710723-19711033	HepG2	liver:	n/a	chr10:19710892-19710903
47	CEBPB	chr10:19721890-19721917	H1-hESC	embryonic stem cell:	n/a	chr10:19721890-19721907
48	CEBPB	chr10:19593499-19593740	HepG2	liver:	n/a	n/a
49	CEBPB	chr10:19710815-19710994	K562	blood:	n/a	chr10:19710892-19710903
50	CEBPB	chr10:19589028-19589280	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:19705290-19705340	HL-60	blood:	n/a
2	chr10:19705290-19705340	HL-60	blood:	n/a
3	chr10:19705290-19705340	A549	lung:	n/a
4	chr10:19705290-19705340	SK-N-SH_RA	brain:	n/a
5	chr10:19778008-19778058	HRCEpiC	kidney:	n/a
6	chr10:19778008-19778058	A549	lung:	n/a
7	chr10:19778008-19778058	ovcar-3	ovarian:	n/a
8	chr10:19778008-19778058	Hela-S3	cervix:	n/a
9	chr10:19778008-19778058	NHBE	bronchial:	n/a
10	chr10:19778008-19778058	HUVEC	blood vessel:	n/a
11	chr10:19705290-19705340	LNCaP	prostate:	n/a
12	chr10:19778008-19778058	BE2_C	brain:	n/a
13	chr10:19540759-19540809	NB4	blood:	n/a
14	chr10:19540759-19540809	HAEpiC	amniotic membrane:	n/a
15	chr10:19705290-19705340	NT2-D1	testis:	n/a
16	chr10:19778008-19778058	HL-60	blood:	n/a
17	chr10:19540759-19540809	HNPCEpiC	eye:	n/a
18	chr10:19705290-19705340	HCT-116	colon:	n/a
19	chr10:19540759-19540809	NHDF-neo	bronchial:	n/a
20	chr10:19705290-19705340	HPAEpiC	pulmonary alveolar:	n/a
21	chr10:19540759-19540809	GM12878	blood:	n/a
22	chr10:19540759-19540809	NT2-D1	testis:	n/a
23	chr10:19705290-19705340	PFSK-1	brain:	n/a
24	chr10:19540759-19540809	AoSMC	blood vessel:	n/a
25	chr10:19540759-19540809	K562	blood:	n/a
26	chr10:19778008-19778058	NHDF-neo	bronchial:	n/a
27	chr10:19540759-19540809	Caco-2	colon:	n/a
28	chr10:19540759-19540809	Jurkat	blood:	n/a
29	chr10:19540759-19540809	HPAEpiC	pulmonary alveolar:	n/a
30	chr10:19540759-19540809	LNCaP	prostate:	n/a
31	chr10:19705290-19705340	NHBE	bronchial:	n/a
32	chr10:19778008-19778058	AG04449	skin:	fetal
33	chr10:19705290-19705340	HRPEpiC	eye:	n/a
34	chr10:19778008-19778058	K562	blood:	n/a
35	chr10:19705290-19705340	NHDF-neo	bronchial:	n/a
36	chr10:19540759-19540809	SAEC	small airway:	n/a
37	chr10:19705290-19705340	RPTEC	kidney:	n/a
38	chr10:19778008-19778058	HMEC	breast:	n/a
39	chr10:19778008-19778058	HCT-116	colon:	n/a
40	chr10:19705290-19705340	MCF-7	breast:	n/a
41	chr10:19778008-19778058	SK-N-MC	brain:	n/a
42	chr10:19540759-19540809	HRE	kidney:	n/a
43	chr10:19540759-19540809	HCT-116	colon:	n/a
44	chr10:19540759-19540809	HCM	heart:	n/a
45	chr10:19778008-19778058	NT2-D1	testis:	n/a
46	chr10:19540759-19540809	A549	lung:	n/a
47	chr10:19778008-19778058	AG09309	skin:	n/a
48	chr10:19540759-19540809	HUVEC	blood vessel:	n/a
49	chr10:19540759-19540809	HEK293	kidney:	embryo
50	chr10:19778008-19778058	HCM	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:19502635..19505234-chr10:19507325..19509106,2	MCF-7	breast:
2	chr10:19534164..19535892-chr10:19543312..19545061,2	MCF-7	breast:
3	chr10:19466484..19467327-chr10:19521039..19521911,3	MCF-7	breast:
4	chr10:18978169..18978867-chr10:19699824..19700403,3	MCF-7	breast:
5	chr10:19623502..19625941-chr10:19631040..19633191,2	K562	blood:
6	chr10:19610336..19613284-chr14:35868183..35870740,2	MCF-7	breast:
7	chr10:19502635..19505234-chr10:19507325..19509106,2	MCF-7	breast:
8	chr10:19806044..19808111-chr10:19811941..19813567,2	K562	blood:
9	chr10:19704403..19706854-chr10:20104452..20106050,2	MCF-7	breast:
10	chr10:19785625..19787709-chr10:19788365..19791040,2	MCF-7	breast:
11	chr10:19769588..19771872-chr10:19775105..19777621,2	K562	blood:
12	chr10:19644040..19646101-chr10:19646355..19648931,2	MCF-7	breast:
13	chr10:19701583..19703629-chr10:19722720..19725656,2	MCF-7	breast:
14	chr10:19590664..19593584-chr10:19602792..19604860,2	K562	blood:
15	chr10:19466484..19467327-chr10:19521039..19521911,3	MCF-7	breast:
16	chr10:19709784..19712687-chr10:19713625..19715285,2	K562	blood:
17	chr10:19551633..19554617-chr10:19556322..19558693,2	K562	blood:
18	chr10:19578194..19580695-chr10:19582089..19585004,2	K562	blood:
19	chr10:19623502..19625941-chr10:19631040..19633191,2	K562	blood:
20	chr10:19781369..19782958-chr10:19786296..19789278,2	MCF-7	breast:
21	chr10:19547526..19550166-chr10:19551019..19552884,2	MCF-7	breast:
22	chr10:19724105..19725802-chr10:19728835..19730495,2	K562	blood:
23	chr10:19724105..19725802-chr10:19728835..19730495,2	K562	blood:
24	chr10:19497233..19499735-chr10:19518305..19520335,2	MCF-7	breast:
25	chr10:19510172..19510750-chr10:19521065..19522003,2	MCF-7	breast:
26	chr10:19466484..19467332-chr10:19521028..19521911,4	MCF-7	breast:
27	chr10:19510172..19510750-chr10:19521065..19522003,2	MCF-7	breast:
28	chr10:19497233..19499735-chr10:19518305..19520335,2	MCF-7	breast:
29	chr10:19534164..19535892-chr10:19543312..19545061,2	MCF-7	breast:
30	chr10:19776078..19778713-chr10:19790449..19792992,2	K562	blood:
31	chr10:19547526..19550166-chr10:19551019..19552884,2	MCF-7	breast:
32	chr10:19466484..19467332-chr10:19521028..19521911,4	MCF-7	breast:
33	chr10:19701583..19703629-chr10:19722720..19725656,2	MCF-7	breast:
34	chr10:19784572..19786146-chr10:19787649..19789922,2	MCF-7	breast:
35	chr10:19781369..19782958-chr10:19786296..19789278,2	MCF-7	breast:
36	chr10:19709784..19712687-chr10:19713625..19715285,2	K562	blood:
37	chr10:19496117..19498249-chr10:19507924..19510695,2	MCF-7	breast:
38	chr10:19784572..19786146-chr10:19787649..19789922,2	MCF-7	breast:
39	chr10:19785625..19787709-chr10:19788365..19791040,2	MCF-7	breast:
40	chr10:19544299..19547180-chr10:19549327..19551757,2	MCF-7	breast:
41	chr10:19644040..19646101-chr10:19646355..19648931,2	MCF-7	breast:
42	chr10:19598040..19600371-chr10:19601058..19603498,2	MCF-7	breast:
43	chr10:19496117..19498249-chr10:19507924..19510695,2	MCF-7	breast:
44	chr10:19702800..19704977-chr10:19710060..19711569,2	MCF-7	breast:
45	chr10:19551633..19554617-chr10:19556322..19558693,2	K562	blood:
46	chr10:19701065..19702056-chr10:20076746..20077511,2	MCF-7	breast:
47	chr10:19702800..19704977-chr10:19710060..19711569,2	MCF-7	breast:
48	chr10:19544299..19547180-chr10:19549327..19551757,2	MCF-7	breast:
49	chr10:19598040..19600371-chr10:19601058..19603498,2	MCF-7	breast:
50	chr10:19590664..19593584-chr10:19602792..19604860,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLXDC2-6	chr10:19778030-19778329	NONHSAT011661
2	lnc-NSUN6-6	chr10:19580351-19580409	XLOC_008744
3	lnc-NSUN6-6	chr10:19579152-19579395	XLOC_008744
4	lnc-NSUN6-7	chr10:19780001-19780228	NONHSAT011662

Variant related genes	Relation type
HMGN1P20	TF binding region
MALRD1	TF binding region
ENSG00000236960	TF binding region
ENSG00000227734	TF binding region
HMGN1P20	CpG island
MALRD1	CpG island
ENSG00000236960	CpG island
ENSG00000227734	CpG island
ENSG00000204740	chromatin interactions
ENSG00000239539	chromatin interactions
ENSG00000227734	chromatin interactions
ENSG00000120594	chromatin interactions

Extended variants
information (count: 16071 )
Associated
traits (count: 47 )

Variant overlapped rSNPs/rCNVs (count:16071 , 50 per page) page: 1 2 3 4 5 6 7 ... 322

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11008767	chr10:19461979-19461980	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs11008768	chr10:19462049-19462050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555523398	chr10:19462082-19462083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs150654727	chr10:19462089-19462090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61851301	chr10:19462138-19462139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536358656	chr10:19462200-19462201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs185693602	chr10:19462226-19462227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs189620180	chr10:19462231-19462232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs534080917	chr10:19462232-19462233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112439293	chr10:19462253-19462254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376950780	chr10:19462269-19462270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs570517372	chr10:19462301-19462302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs180894863	chr10:19462307-19462308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs556105801	chr10:19462328-19462329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs185908871	chr10:19462332-19462333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs535460588	chr10:19462370-19462371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192041985	chr10:19462414-19462415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs34651484	chr10:19462443-19462444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs10827011	chr10:19462448-19462449	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs183128313	chr10:19462452-19462453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564169739	chr10:19462472-19462473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs12245038	chr10:19462545-19462546	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs10827012	chr10:19462576-19462577	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs562657737	chr10:19462607-19462608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs551402609	chr10:19462608-19462609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs548182267	chr10:19462680-19462681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs139906281	chr10:19462683-19462684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369161419	chr10:19462713-19462714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528018022	chr10:19462757-19462758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552736140	chr10:19462771-19462772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375850661	chr10:19462783-19462784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142213161	chr10:19462792-19462793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372523537	chr10:19462793-19462794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577389369	chr10:19462810-19462811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs186005891	chr10:19462862-19462863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190403547	chr10:19462872-19462873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371043223	chr10:19462886-19462887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568162090	chr10:19462913-19462914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182692432	chr10:19463081-19463082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs538194093	chr10:19463191-19463192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs77048842	chr10:19463192-19463193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs539378499	chr10:19463227-19463228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs557918076	chr10:19463288-19463289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146389403	chr10:19463315-19463316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543624549	chr10:19463318-19463319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs562597215	chr10:19463319-19463320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs553018814	chr10:19463332-19463333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs187932818	chr10:19463356-19463357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs6481773	chr10:19463367-19463368	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs192827521	chr10:19463422-19463423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:47)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:514 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19457600-19475800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19458200-19465800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19465600-19465800	Enhancers	Pancreas	Pancrea
5	chr10:19465800-19468000	Enhancers	Fetal Intestine Large	intestine
6	chr10:19467000-19467400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr10:19467400-19467600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr10:19467600-19467800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:19467600-19468000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:19467800-19468000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:19468000-19468400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr10:19468000-19475800	Weak transcription	Fetal Intestine Large	intestine
13	chr10:19473000-19473200	Enhancers	Fetal Lung	lung
14	chr10:19473800-19474600	Active TSS	Fetal Lung	lung
15	chr10:19474600-19474800	Enhancers	Fetal Lung	lung
16	chr10:19475800-19477600	Strong transcription	Fetal Intestine Large	intestine
17	chr10:19475800-19477800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:19477600-19477800	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr10:19477800-19492200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:19481000-19481200	Enhancers	Fetal Intestine Large	intestine
21	chr10:19481200-19488400	Weak transcription	Fetal Intestine Large	intestine
22	chr10:19486400-19486800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:19487600-19496800	Weak transcription	Small Intestine	intestine
24	chr10:19488400-19490000	Enhancers	Fetal Intestine Large	intestine
25	chr10:19488800-19489200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:19489000-19489600	Enhancers	Fetal Intestine Small	intestine
27	chr10:19489600-19493200	Weak transcription	Fetal Intestine Small	intestine
28	chr10:19490000-19492400	Weak transcription	Fetal Intestine Large	intestine
29	chr10:19492200-19501400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr10:19492400-19496000	Strong transcription	Fetal Intestine Large	intestine
31	chr10:19492600-19493200	Enhancers	Fetal Lung	lung
32	chr10:19493200-19494800	Strong transcription	Fetal Intestine Small	intestine
33	chr10:19494800-19499800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:19496000-19498200	Weak transcription	Fetal Intestine Large	intestine
35	chr10:19498200-19500400	Strong transcription	Fetal Intestine Large	intestine
36	chr10:19499800-19500800	Strong transcription	Fetal Intestine Small	intestine
37	chr10:19500400-19518600	Weak transcription	Fetal Intestine Large	intestine
38	chr10:19500600-19501600	Enhancers	Fetal Lung	lung
39	chr10:19500800-19502200	Weak transcription	Fetal Intestine Small	intestine
40	chr10:19501400-19502800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:19501600-19502800	Weak transcription	Fetal Lung	lung
42	chr10:19502200-19502800	Strong transcription	Fetal Intestine Small	intestine
43	chr10:19502800-19503000	Enhancers	Fetal Lung	lung
44	chr10:19502800-19504000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:19502800-19505200	Weak transcription	Fetal Intestine Small	intestine
46	chr10:19504000-19546600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:19505200-19506800	Strong transcription	Fetal Intestine Small	intestine
48	chr10:19506800-19523600	Weak transcription	Fetal Intestine Small	intestine
49	chr10:19509400-19510800	Enhancers	Hela-S3	cervix
50	chr10:19517000-19518000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links