Variant report

Variant	nsv540995
Chromosome Location	chr11:33117833-33448457
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4593)
CpG islands
(count:3664)
Chromatin interactive
region (count:322)
LncRNA
region (count:18)
Mature miRNA
region (count: 0)
miRNA target
sites (count:14)

(count:4593 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:33288039-33288460	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:33383925-33384254	HepG2	liver:	n/a	n/a
3	ARID3A	chr11:33182051-33183545	K562	blood:	n/a	n/a
4	ARID3A	chr11:33383912-33384198	K562	blood:	n/a	n/a
5	ARID3A	chr11:33351288-33351628	HepG2	liver:	n/a	n/a
6	ARID3A	chr11:33288174-33288395	K562	blood:	n/a	n/a
7	ARID3A	chr11:33394101-33394301	HepG2	liver:	n/a	n/a
8	ARID3A	chr11:33280884-33281018	HepG2	liver:	n/a	n/a
9	ARID3A	chr11:33280804-33281150	K562	blood:	n/a	n/a
10	ARID3A	chr11:33364523-33364723	K562	blood:	n/a	n/a
11	ARID3A	chr11:33278760-33279150	HepG2	liver:	n/a	n/a
12	ARID3A	chr11:33342559-33342940	K562	blood:	n/a	n/a
13	ARID3A	chr11:33181198-33181511	K562	blood:	n/a	n/a
14	ARID3A	chr11:33277822-33278022	HepG2	liver:	n/a	n/a
15	ARID3A	chr11:33351286-33351649	K562	blood:	n/a	n/a
16	ARID3A	chr11:33204058-33204223	HepG2	liver:	n/a	n/a
17	ARID3A	chr11:33233161-33233450	HepG2	liver:	n/a	n/a
18	ARID3A	chr11:33187666-33188187	K562	blood:	n/a	chr11:33188154-33188170
19	ARID3A	chr11:33187786-33188158	HepG2	liver:	n/a	n/a
20	ARID3A	chr11:33280061-33280282	K562	blood:	n/a	n/a
21	ARID3A	chr11:33201178-33201210	K562	blood:	n/a	n/a
22	ARID3A	chr11:33182607-33183285	HepG2	liver:	n/a	n/a
23	ARID3A	chr11:33229217-33229421	K562	blood:	n/a	n/a
24	ARID3A	chr11:33169179-33169315	K562	blood:	n/a	n/a
25	ARID3A	chr11:33279537-33280483	HepG2	liver:	n/a	n/a
26	ARID3A	chr11:33193183-33193188	K562	blood:	n/a	n/a
27	ATF1	chr11:33351332-33351614	K562	blood:	n/a	n/a
28	ATF1	chr11:33394198-33394335	K562	blood:	n/a	n/a
29	ATF1	chr11:33249480-33249846	K562	blood:	n/a	n/a
30	ATF1	chr11:33182918-33183497	K562	blood:	n/a	n/a
31	ATF1	chr11:33342458-33342912	K562	blood:	n/a	n/a
32	ATF1	chr11:33190481-33190793	K562	blood:	n/a	n/a
33	ATF1	chr11:33181115-33181435	K562	blood:	n/a	n/a
34	ATF1	chr11:33275258-33275288	K562	blood:	n/a	n/a
35	ATF1	chr11:33341606-33341888	K562	blood:	n/a	n/a
36	ATF1	chr11:33329665-33330069	K562	blood:	n/a	n/a
37	ATF2	chr11:33279927-33280370	H1-hESC	embryonic stem cell:	n/a	n/a
38	ATF2	chr11:33182564-33183612	H1-hESC	embryonic stem cell:	n/a	chr11:33183172-33183183
39	ATF2	chr11:33404542-33405049	GM12878	blood:	n/a	n/a
40	ATF2	chr11:33279439-33280494	GM12878	blood:	n/a	n/a
41	ATF2	chr11:33404441-33405009	GM12878	blood:	n/a	n/a
42	ATF2	chr11:33182750-33183468	GM12878	blood:	n/a	chr11:33183172-33183183
43	ATF2	chr11:33409013-33410089	GM12878	blood:	n/a	n/a
44	ATF2	chr11:33411036-33411671	GM12878	blood:	n/a	n/a
45	ATF2	chr11:33409042-33410013	GM12878	blood:	n/a	n/a
46	ATF2	chr11:33182677-33183409	GM12878	blood:	n/a	chr11:33183172-33183183
47	ATF2	chr11:33182565-33183521	H1-hESC	embryonic stem cell:	n/a	chr11:33183172-33183183
48	ATF3	chr11:33342449-33342699	K562	blood:	n/a	n/a
49	ATF3	chr11:33279487-33279990	A549	lung:	n/a	n/a
50	ATF3	chr11:33182601-33183715	A549	lung:	n/a	chr11:33183174-33183181 chr11:33183174-33183182 chr11:33183170-33183185 chr11:33183172-33183185 chr11:33183172-33183183 chr11:33183151-33183160 chr11:33183171-33183182

(count:3664 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:33317039-33317089	SK-N-SH_RA	brain:	n/a
2	chr11:33156837-33156887	HRE	kidney:	n/a
3	chr11:33396859-33396909	HL-60	blood:	n/a
4	chr11:33397153-33397203	IMR90	lung:	fetal
5	chr11:33317039-33317089	SK-N-SH_RA	brain:	n/a
6	chr11:33156837-33156887	HRE	kidney:	n/a
7	chr11:33396859-33396909	HL-60	blood:	n/a
8	chr11:33397153-33397203	IMR90	lung:	fetal
9	chr11:33209645-33209695	ECC-1	luminal epithelium:	n/a
10	chr11:33279091-33279141	HIPEpiC	eye:	n/a
11	chr11:33396983-33397033	AG10803	skin:	n/a
12	chr11:33398366-33398416	HEK293	kidney:	embryo
13	chr11:33399978-33400028	HRPEpiC	eye:	n/a
14	chr11:33217195-33217245	ECC-1	luminal epithelium:	n/a
15	chr11:33182787-33182837	SAEC	small airway:	n/a
16	chr11:33279087-33279137	Hela-S3	cervix:	n/a
17	chr11:33334443-33334493	HRCEpiC	kidney:	n/a
18	chr11:33317015-33317065	GM06990	blood:	n/a
19	chr11:33279136-33279186	BJ	skin:	n/a
20	chr11:33183110-33183160	HRPEpiC	eye:	n/a
21	chr11:33199839-33199889	LNCaP	prostate:	n/a
22	chr11:33308269-33308319	PrEC	prostate:	n/a
23	chr11:33183263-33183313	HCM	heart:	n/a
24	chr11:33214297-33214347	MCF10A-Er-Src	breast:	n/a
25	chr11:33397821-33397871	NHBE	bronchial:	n/a
26	chr11:33156837-33156887	HNPCEpiC	eye:	n/a
27	chr11:33276523-33276573	Jurkat	blood:	n/a
28	chr11:33211414-33211464	SK-N-SH	brain:	n/a
29	chr11:33397153-33397203	PrEC	prostate:	n/a
30	chr11:33182890-33182940	BJ	skin:	n/a
31	chr11:33317039-33317089	HEEpiC	esophagus:	n/a
32	chr11:33278186-33278236	GM12891	blood:	n/a
33	chr11:33398366-33398416	NB4	blood:	n/a
34	chr11:33280157-33280207	HMEC	breast:	n/a
35	chr11:33265440-33265490	ECC-1	luminal epithelium:	n/a
36	chr11:33397387-33397437	HEEpiC	esophagus:	n/a
37	chr11:33156837-33156887	HAEpiC	amniotic membrane:	n/a
38	chr11:33317093-33317143	HCPEpiC	choroid plexus:	n/a
39	chr11:33279252-33279302	T-47D	breast:	n/a
40	chr11:33346306-33346356	GM12878	blood:	n/a
41	chr11:33394273-33394323	GM12878	blood:	n/a
42	chr11:33308269-33308319	HEK293	kidney:	embryo
43	chr11:33276523-33276573	Hela-S3	cervix:	n/a
44	chr11:33214297-33214347	NHBE	bronchial:	n/a
45	chr11:33317015-33317065	MCF10A-Er-Src	breast:	n/a
46	chr11:33334443-33334493	BE2_C	brain:	n/a
47	chr11:33182799-33182849	HCPEpiC	choroid plexus:	n/a
48	chr11:33276523-33276573	U87	brain:	n/a
49	chr11:33375412-33375462	AoSMC	blood vessel:	n/a
50	chr11:33280012-33280062	H1-hESC	embryonic stem cell:	embryo

(count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Distal block	Cell Line	Cell type
1	chr11:33295510..33298168-chr11:33350276..33353237,2	K562	blood:
2	chr11:33161983..33167383-chr11:33177368..33180644,5	K562	blood:
3	chr11:33241181..33243191-chr11:33245641..33247862,2	MCF-7	breast:
4	chr11:33165074..33167895-chr11:33168095..33170897,3	K562	blood:
5	chr11:33292487..33295323-chr11:33297832..33299611,2	K562	blood:
6	chr11:33372537..33375934-chr11:33378619..33381344,3	MCF-7	breast:
7	chr11:33278153..33279017-chr7:128379096..128379858,2	Hela-S3	cervix:
8	chr11:32913171..32916144-chr11:33182605..33184521,3	K562	blood:
9	chr11:33279068..33280061-chr11:67195914..67196832,2	Hela-S3	cervix:
10	chr11:33345288..33347427-chr11:33347864..33349944,2	MCF-7	breast:
11	chr11:33278311..33281091-chr22:19157790..19160697,2	MCF-7	breast:
12	chr11:33265908..33267622-chr11:33278289..33281327,3	MCF-7	breast:
13	chr11:33187786..33191779-chr11:33278023..33282064,7	MCF-7	breast:
14	chr11:33278431..33280994-chr11:33343148..33345280,2	MCF-7	breast:
15	chr11:33267480..33271185-chr11:33277468..33280694,5	MCF-7	breast:
16	chr11:33278289..33280501-chr11:33334175..33335713,2	MCF-7	breast:
17	chr11:33399022..33400859-chr11:33402110..33404984,2	K562	blood:
18	chr11:33327923..33330739-chr11:33334207..33336221,2	K562	blood:
19	chr11:33171924..33174713-chr11:33176095..33179551,3	MCF-7	breast:
20	chr11:33278060..33280845-chr11:33344585..33346232,2	MCF-7	breast:
21	chr11:33133887..33136865-chr11:33162527..33165170,2	K562	blood:
22	chr11:33300641..33303261-chr11:33311159..33314863,3	K562	blood:
23	chr11:33173832..33178118-chr11:33179757..33183730,5	MCF-7	breast:
24	chr11:33303628..33306131-chr11:33323858..33326842,2	MCF-7	breast:
25	chr11:33330031..33332498-chr11:33332591..33335075,2	MCF-7	breast:
26	chr11:33277371..33280516-chr11:33349638..33353162,5	MCF-7	breast:
27	chr11:33278606..33279290-chr11:33341646..33342645,2	MCF-7	breast:
28	chr11:33180427..33182793-chr11:33208448..33210251,2	K562	blood:
29	chr11:33182577..33183118-chr15:64387933..64388627,2	Hela-S3	cervix:
30	chr11:33290160..33295323-chr11:33296264..33299611,6	K562	blood:
31	chr11:33426996..33428983-chr11:33431666..33434178,3	K562	blood:
32	chr11:33157170..33158945-chr11:33172836..33175107,2	K562	blood:
33	chr11:33384382..33386417-chr11:33393888..33396516,2	K562	blood:
34	chr11:33180325..33183648-chr11:33198463..33201450,3	K562	blood:
35	chr11:33246835..33249604-chr11:33278881..33281547,2	K562	blood:
36	chr11:33277741..33279641-chr11:33288313..33289989,2	MCF-7	breast:
37	chr11:33160988..33163262-chr11:33164443..33166161,2	MCF-7	breast:
38	chr11:33277797..33278342-chr14:60715056..60715739,2	Hela-S3	cervix:
39	chr11:33278424..33279208-chr12:46766017..46766703,2	NB4	blood:
40	chr11:33249691..33251734-chr11:33277747..33280256,2	K562	blood:
41	chr11:33308929..33311681-chr11:33352469..33354383,2	MCF-7	breast:
42	chr11:33395838..33399105-chr11:33400150..33402846,3	MCF-7	breast:
43	chr11:33266904..33268879-chr11:33348214..33350841,2	K562	blood:
44	chr11:33215749..33218318-chr11:33225000..33226573,2	K562	blood:
45	chr11:33118081..33120716-chr11:33128955..33131930,2	MCF-7	breast:
46	chr11:33253729..33256615-chr11:33278156..33280553,2	MCF-7	breast:
47	chr11:33278197..33279052-chr5:134240296..134240970,2	Hela-S3	cervix:
48	chr11:33181442..33182010-chr15:57615799..57616300,2	Hela-S3	cervix:
49	chr11:33277710..33282201-chr11:33292143..33296310,6	K562	blood:
50	chr11:33360349..33362095-chr11:33370787..33373728,2	MCF-7	breast:

(count:18 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP11L1-1	chr11:33210914-33211103	ENSG00000247151
2	lnc-CSTF3-4	chr11:33212346-33212446	NONHSAT018694
3	lnc-TCP11L1-1	chr11:33210316-33210396	ENSG00000247151
4	lnc-TCP11L1-1	chr11:33183203-33183327	ENSG00000247151
5	lnc-TCP11L1-1	chr11:33211479-33213144	ENSG00000247151
6	lnc-TCP11L1-4	chr11:33334713-33335041	expReg_chr11_2985_+
7	lnc-TCP11L1-1	chr11:33210316-33210396	ENSG00000247151
8	lnc-CSTF3-4	chr11:33212459-33213144	NONHSAT018694
9	lnc-TCP11L1-1	chr11:33210914-33211103	NONHSAT018691
10	lnc-CSTF3-5	chr11:33222131-33222464	NONHSAT018696
11	lnc-TCP11L1-1	chr11:33183203-33183327	NONHSAT018691
12	lnc-TCP11L1-1	chr11:33183234-33183327	ENSG00000247151
13	lnc-TCP11L1-1	chr11:33211479-33211840	ENSG00000247151
14	lnc-HIPK3-2	chr11:33424762-33425151	NONHSAT018700
15	lnc-TCP11L1-1	chr11:33210316-33210396	NONHSAT018691
16	lnc-TCP11L1-3	chr11:33333205-33333598	expReg_chr11_2971_+
17	lnc-CSTF3-3	chr11:33211608-33212049	NONHSAT018693
18	lnc-TCP11L1-1	chr11:33211479-33213142	NONHSAT018691

No data

(count:14 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	HIPK3	hsa-miR-19b-3p	chr11:33358682-33358704
2	HIPK3	hsa-miR-20b-5p	chr11:33375709-33375730
3	HIPK3	hsa-miR-124-3p	chr11:33375663-33375670
4	HIPK3	hsa-miR-19b-3p	chr11:33375275-33375282
5	HIPK3	hsa-miR-20b-5p	chr11:33375245-33375267
6	HIPK3	hsa-miR-19b-3p	chr11:33375260-33375282
7	HIPK3	hsa-miR-92a-3p	chr11:33375388-33375409
8	HIPK3	hsa-miR-124-3p	chr11:33375376-33375395
9	HIPK3	hsa-miR-92a-3p	chr11:33375228-33375234
10	HIPK3	hsa-miR-92a-3p	chr11:33375214-33375235
11	HIPK3	hsa-miR-124-3p	chr11:33375651-33375670
12	HIPK3	hsa-miR-106a-5p	chr11:33375245-33375267
13	HIPK3	hsa-miR-335-5p	chr11:33375589-33375614
14	HIPK3	hsa-miR-106a-5p	chr11:33375709-33375730

Variant related genes	Relation type
ENSG00000200485	TF binding region
CSTF3	TF binding region
ENSG00000241255	TF binding region
CSTF3-AS1	TF binding region
ENSG00000206808	TF binding region
HIPK3	TF binding region
RPL29P23	TF binding region
ENSG00000254537	TF binding region
ENSG00000223134	TF binding region
ENSG00000200485	CpG island
CSTF3	CpG island
ENSG00000241255	CpG island
CSTF3-AS1	CpG island
ENSG00000206808	CpG island
HIPK3	CpG island
RPL29P23	CpG island
ENSG00000254537	CpG island
ENSG00000223134	CpG island
ENSG00000176102	chromatin interactions
ENSG00000102786	chromatin interactions
ENSG00000141522	chromatin interactions
ENSG00000060749	chromatin interactions
ENSG00000130066	chromatin interactions
ENSG00000236778	chromatin interactions
ENSG00000202198	chromatin interactions
ENSG00000182718	chromatin interactions
ENSG00000117335	chromatin interactions
ENSG00000114779	chromatin interactions
ENSG00000206573	chromatin interactions
ENSG00000248487	chromatin interactions
ENSG00000247151	chromatin interactions
ENSG00000135387	chromatin interactions
ENSG00000206808	chromatin interactions
ENSG00000254718	chromatin interactions
ENSG00000272762	chromatin interactions
ENSG00000028528	chromatin interactions
ENSG00000263004	chromatin interactions
ENSG00000128595	chromatin interactions
ENSG00000177542	chromatin interactions
ENSG00000105479	chromatin interactions
ENSG00000132570	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000200485	chromatin interactions
ENSG00000110422	chromatin interactions
ENSG00000175634	chromatin interactions
ENSG00000111669	chromatin interactions
ENSG00000079805	chromatin interactions
ENSG00000176148	chromatin interactions
ENSG00000207972	chromatin interactions
ENSG00000170899	chromatin interactions
ENSG00000260924	chromatin interactions
ENSG00000134294	chromatin interactions
ENSG00000108846	chromatin interactions
ENSG00000085063	chromatin interactions
ENSG00000223134	chromatin interactions
ENSG00000115904	chromatin interactions
ENSG00000196331	chromatin interactions
ENSG00000254537	chromatin interactions
ENSG00000107745	chromatin interactions
PSME3	miRNA target sites
ARID2	miRNA target sites
ERI2	miRNA target sites
YWHAZ	miRNA target sites
MICALL1	miRNA target sites
NUP160	miRNA target sites

Extended variants
information (count: 11430 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:11430 , 50 per page) page: 1 2 3 4 5 6 7 ... 229

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535016352	chr11:33117838-33117839	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs540140664	chr11:33117844-33117845	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111413622	chr11:33117880-33117881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201000740	chr11:33117958-33117959	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs374757793	chr11:33117982-33117983	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs75467356	chr11:33117987-33117988	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111991690	chr11:33118029-33118030	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs183428366	chr11:33118076-33118077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs188827312	chr11:33118093-33118094	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs7104129	chr11:33118137-33118138	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs557137623	chr11:33118171-33118172	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576936278	chr11:33118200-33118201	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs190151503	chr11:33118223-33118224	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs7103953	chr11:33118274-33118275	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs528533457	chr11:33118329-33118330	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200504390	chr11:33118352-33118353	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201188605	chr11:33118358-33118359	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561886549	chr11:33118393-33118394	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs11553357	chr11:33118430-33118431	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74989023	chr11:33118436-33118437	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371439797	chr11:33118516-33118517	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148810783	chr11:33118522-33118523	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201347951	chr11:33118530-33118531	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs202039933	chr11:33118535-33118536	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs369352025	chr11:33118556-33118557	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571054597	chr11:33118587-33118588	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs149486074	chr11:33118644-33118645	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372760393	chr11:33118653-33118654	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs60351229	chr11:33118692-33118693	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs182745457	chr11:33118698-33118699	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554560841	chr11:33118813-33118814	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186652143	chr11:33118817-33118818	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs10836021	chr11:33118888-33118889	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs191455249	chr11:33118908-33118909	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113906826	chr11:33118920-33118921	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs559195635	chr11:33118922-33118923	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs185500385	chr11:33118939-33118940	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs577000196	chr11:33118962-33118963	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546009359	chr11:33118978-33118979	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs143988222	chr11:33118979-33118980	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs573177486	chr11:33118999-33119000	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542105304	chr11:33119011-33119012	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs562127734	chr11:33119035-33119036	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569138130	chr11:33119059-33119060	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs188760901	chr11:33119076-33119077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs148252261	chr11:33119104-33119105	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544728010	chr11:33119126-33119127	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564415413	chr11:33119157-33119158	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs10767989	chr11:33119205-33119206	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs536021714	chr11:33119221-33119222	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	22286061	CNVD
Aniridia syndrome	21572526	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Retinoblastoma	22278416	CNVD
Denys-drash syndrome	21085971	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
WAGR syndrome	16773131	CNVD
Disorders of sex development	22290220	CNVD
Aniridia syndrome	17204608	CNVD
Mental retardation	17204608	CNVD
WAGR syndrome	19617690	CNVD
genitourinary abnormalities	17204608	CNVD
Breast cancer	16397240	CNVD
Mental retardation	16773131	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17160897	CNVD
Cancer	21183584	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
WAGR syndrome	22470819	CNVD
Neurodevelopmental disorder	22521361	CNVD
Denys-drash syndrome	19566914	CNVD
Familial wilms tumor	19566914	CNVD
Frasier syndrome	19566914	CNVD
Non-small cell lung cancer	21829676	CNVD
WAGR syndrome	20603712	CNVD
Autism	17322880	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21858162	CNVD
Cancer	20164920	CNVD
Breast cancer	16620391	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:7185 , 50 per page) page: 1 2 3 4 5 6 7 ... 144

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33075000-33130200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:33076000-33129600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:33085600-33122000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:33086200-33122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:33086400-33127400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:33086600-33119400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:33087200-33129400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:33087800-33138000	Weak transcription	Stomach Mucosa	stomach
9	chr11:33094400-33121400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:33094800-33119400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:33095000-33126800	Weak transcription	Right Ventricle	heart
12	chr11:33095200-33119600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:33098000-33121400	Weak transcription	Small Intestine	intestine
14	chr11:33098000-33122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:33098800-33127400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:33099200-33129400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:33099400-33118800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:33100600-33121400	Weak transcription	Aorta	Aorta
19	chr11:33100800-33122000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:33100800-33123800	Weak transcription	Fetal Brain Male	brain
21	chr11:33101600-33122400	Weak transcription	Esophagus	oesophagus
22	chr11:33103600-33128600	Weak transcription	Gastric	stomach
23	chr11:33104200-33128400	Weak transcription	Pancreas	Pancrea
24	chr11:33104800-33122600	Weak transcription	Spleen	Spleen
25	chr11:33104800-33133600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:33105000-33118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:33106800-33119200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:33106800-33131600	Weak transcription	Psoas Muscle	Psoas
29	chr11:33107000-33119400	Weak transcription	Thymus	Thymus
30	chr11:33107200-33121400	Weak transcription	Lung	lung
31	chr11:33107200-33124600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:33107600-33118200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:33107600-33125600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:33107600-33131200	Weak transcription	Fetal Heart	heart
35	chr11:33107800-33119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:33107800-33122000	Weak transcription	Brain Substantia Nigra	brain
37	chr11:33107800-33125400	Weak transcription	Colonic Mucosa	Colon
38	chr11:33107800-33131000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:33108000-33119400	Weak transcription	Brain Angular Gyrus	brain
40	chr11:33108200-33121400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:33108600-33122000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:33108800-33118000	Weak transcription	HUVEC	blood vessel
43	chr11:33108800-33118200	Weak transcription	HMEC	breast
44	chr11:33108800-33119400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:33108800-33119400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:33108800-33119600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:33109000-33119400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:33109000-33119400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:33109000-33119600	Weak transcription	NHLF	lung
50	chr11:33109000-33122200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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