Variant report

Variant	nsv541162
Chromosome Location	chr11:106718613-106774766
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:106729646..106731875-chr11:106736556..106738444,2	MCF-7	breast:
2	chr11:106751125..106753536-chr11:106754192..106756756,2	K562	blood:
3	chr11:106751125..106753536-chr11:106754192..106756756,2	K562	blood:
4	chr11:106770027..106773007-chr11:106773541..106775762,2	K562	blood:
5	chr11:106767415..106770075-chr11:106776264..106779232,2	K562	blood:
6	chr11:106770027..106773007-chr11:106773541..106775762,2	K562	blood:
7	chr11:106729646..106731875-chr11:106736556..106738444,2	MCF-7	breast:

No data

Extended variants
information (count: 949 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:949 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187295737	chr11:106719004-106719005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs138316027	chr11:106719025-106719026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs114000550	chr11:106719042-106719043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs375027440	chr11:106719067-106719068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs192200468	chr11:106719084-106719085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs117608750	chr11:106719109-106719110	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs114647667	chr11:106719157-106719158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs535826727	chr11:106719164-106719165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs551022382	chr11:106719238-106719239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569737044	chr11:106719239-106719240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs367552498	chr11:106719283-106719284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569571205	chr11:106719348-106719349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540081898	chr11:106719398-106719399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558394800	chr11:106719414-106719415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573446014	chr11:106719459-106719460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs143888685	chr11:106719515-106719516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553014477	chr11:106719608-106719609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200794139	chr11:106719610-106719611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs112406123	chr11:106719652-106719653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs184585873	chr11:106719693-106719694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs367855526	chr11:106719701-106719702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541806453	chr11:106719713-106719714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs565968076	chr11:106719743-106719744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs575183098	chr11:106719751-106719752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545645572	chr11:106719770-106719771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563963440	chr11:106719774-106719775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528256737	chr11:106719782-106719783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74827267	chr11:106719795-106719796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562192503	chr11:106719854-106719855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs542188316	chr11:106719857-106719858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190433902	chr11:106719905-106719906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs192534466	chr11:106719935-106719936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs138846851	chr11:106719951-106719952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs540156642	chr11:106720016-106720017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114362207	chr11:106720019-106720020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs566163434	chr11:106720073-106720074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs567101285	chr11:106720101-106720102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs534885436	chr11:106720119-106720120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs116885065	chr11:106720120-106720121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574642531	chr11:106720211-106720212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs552839527	chr11:106720261-106720262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs17106116	chr11:106720308-106720309	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs535160772	chr11:106720355-106720356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201507667	chr11:106720426-106720427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141414909	chr11:106720429-106720430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556540390	chr11:106720448-106720449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs184301659	chr11:106720469-106720470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs574866454	chr11:106720484-106720485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556378657	chr11:106720540-106720541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545709035	chr11:106720546-106720547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106719000-106719200	Enhancers	Fetal Lung	lung
2	chr11:106719200-106730400	Weak transcription	Fetal Lung	lung
3	chr11:106721200-106721800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:106724600-106724800	ZNF genes & repeats	Right Ventricle	heart
5	chr11:106724600-106725000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:106724600-106725600	ZNF genes & repeats	Fetal Stomach	stomach
7	chr11:106724600-106726000	ZNF genes & repeats	Pancreas	Pancrea
8	chr11:106724800-106725000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:106724800-106725400	ZNF genes & repeats	Spleen	Spleen
10	chr11:106724800-106725600	Weak transcription	Right Ventricle	heart
11	chr11:106724800-106726000	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr11:106726000-106726200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:106726000-106726400	Weak transcription	Pancreas	Pancrea
14	chr11:106727600-106728000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:106730400-106730600	Enhancers	Fetal Lung	lung
16	chr11:106730400-106730800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:106730600-106731200	Weak transcription	Fetal Lung	lung
18	chr11:106731200-106731400	Enhancers	Fetal Lung	lung
19	chr11:106731200-106731600	Enhancers	Fetal Heart	heart
20	chr11:106731400-106731800	Enhancers	Brain Germinal Matrix	brain
21	chr11:106731600-106732000	Enhancers	Brain Anterior Caudate	brain
22	chr11:106733200-106733600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:106733200-106733800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:106741400-106742400	Enhancers	Fetal Heart	heart
25	chr11:106742400-106742800	Flanking Active TSS	Fetal Heart	heart
26	chr11:106742800-106743400	Enhancers	Fetal Heart	heart
27	chr11:106743400-106745800	Weak transcription	Fetal Heart	heart
28	chr11:106745600-106746200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:106745800-106746000	Enhancers	Fetal Lung	lung
30	chr11:106745800-106746400	Enhancers	Fetal Heart	heart
31	chr11:106746000-106752800	Weak transcription	Fetal Lung	lung
32	chr11:106750600-106751200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr11:106750600-106751200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:106750800-106751200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:106750800-106751200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr11:106750800-106751200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr11:106750800-106751400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:106750800-106751400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr11:106750800-106751400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:106750800-106751400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:106764400-106765000	Enhancers	Fetal Heart	heart
42	chr11:106774000-106776800	Enhancers	Fetal Heart	heart

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