Variant report
Variant | nsv543957 |
---|---|
Chromosome Location | chr19:22359491-23153773 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1450)
- CpG islands (count:5433)
- Chromatin interactive region (count:3)
- LncRNA region (count:101)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr19:22877506-22877691 | HepG2 | liver: | n/a | n/a |
2 | ATF1 | chr19:22877658-22877858 | K562 | blood: | n/a | n/a |
3 | ATF3 | chr19:22642573-22642702 | GM12878 | blood: | n/a | n/a |
4 | BACH1 | chr19:22443441-22443605 | H1-hESC | embryonic stem cell: | n/a | n/a |
5 | BACH1 | chr19:22443461-22443584 | K562 | blood: | n/a | n/a |
6 | BACH1 | chr19:22647599-22647613 | K562 | blood: | n/a | n/a |
7 | BACH1 | chr19:22778087-22778102 | K562 | blood: | n/a | n/a |
8 | BACH1 | chr19:22509041-22509220 | K562 | blood: | n/a | n/a |
9 | BACH1 | chr19:22815831-22815842 | K562 | blood: | n/a | n/a |
10 | BATF | chr19:22877551-22877732 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr19:22544504-22544653 | GM12878 | blood: | n/a | n/a |
12 | BCL11A | chr19:22877505-22877742 | GM12878 | blood: | n/a | n/a |
13 | BCL11A | chr19:22877558-22877746 | GM12878 | blood: | n/a | n/a |
14 | BHLHE40 | chr19:22728577-22728773 | K562 | blood: | n/a | n/a |
15 | BRCA1 | chr19:22994463-22994538 | GM12878 | blood: | n/a | n/a |
16 | CBX3 | chr19:23128402-23128691 | HCT-116 | colon: | n/a | n/a |
17 | CBX3 | chr19:23128448-23128739 | K562 | blood: | n/a | n/a |
18 | CBX3 | chr19:23128373-23128734 | K562 | blood: | n/a | n/a |
19 | CEBPB | chr19:23118313-23118486 | IMR90 | lung: | n/a | n/a |
20 | CEBPB | chr19:22916167-22916466 | A549 | lung: | n/a | n/a |
21 | CEBPB | chr19:22998228-22998229 | HepG2 | liver: | n/a | n/a |
22 | CEBPB | chr19:23118289-23118446 | HepG2 | liver: | n/a | n/a |
23 | CEBPB | chr19:22910729-22911321 | HepG2 | liver: | n/a | chr19:22911202-22911213 |
24 | CEBPB | chr19:22833844-22834030 | IMR90 | lung: | n/a | chr19:22833871-22833882 |
25 | CEBPB | chr19:23097511-23097684 | IMR90 | lung: | n/a | n/a |
26 | CEBPB | chr19:22508487-22508554 | K562 | blood: | n/a | n/a |
27 | CEBPB | chr19:23116861-23117528 | HepG2 | liver: | n/a | n/a |
28 | CEBPB | chr19:22998315-22998467 | A549 | lung: | n/a | n/a |
29 | CEBPB | chr19:23003921-23004324 | HepG2 | liver: | n/a | n/a |
30 | CEBPB | chr19:22511948-22512805 | A549 | lung: | n/a | n/a |
31 | CEBPB | chr19:22516851-22517438 | A549 | lung: | n/a | chr19:22516901-22516912 |
32 | CEBPB | chr19:23118365-23118458 | A549 | lung: | n/a | n/a |
33 | CEBPB | chr19:22874635-22874837 | HepG2 | liver: | n/a | chr19:22874736-22874747 |
34 | CEBPB | chr19:22905300-22905768 | A549 | lung: | n/a | chr19:22905338-22905349 |
35 | CEBPB | chr19:22687591-22687843 | HepG2 | liver: | n/a | chr19:22687678-22687689 |
36 | CEBPB | chr19:22655610-22655740 | A549 | lung: | n/a | chr19:22655662-22655673 chr19:22655661-22655674 |
37 | CEBPB | chr19:22905317-22905370 | HepG2 | liver: | n/a | chr19:22905338-22905349 |
38 | CEBPB | chr19:22439629-22440035 | HepG2 | liver: | n/a | n/a |
39 | CEBPB | chr19:22510256-22510694 | IMR90 | lung: | n/a | n/a |
40 | CEBPB | chr19:23024786-23024905 | A549 | lung: | n/a | chr19:23024862-23024873 |
41 | CEBPB | chr19:22508303-22508602 | Hela-S3 | cervix: | n/a | n/a |
42 | CEBPB | chr19:22519640-22520060 | A549 | lung: | n/a | chr19:22519735-22519746 |
43 | CEBPB | chr19:22910687-22911305 | A549 | lung: | n/a | chr19:22911202-22911213 |
44 | CEBPB | chr19:22620961-22621192 | Hela-S3 | cervix: | n/a | chr19:22621023-22621034 |
45 | CEBPB | chr19:23118721-23118923 | HepG2 | liver: | n/a | n/a |
46 | CEBPB | chr19:22435325-22435617 | A549 | lung: | n/a | n/a |
47 | CEBPB | chr19:22905591-22905703 | HepG2 | liver: | n/a | n/a |
48 | CEBPB | chr19:22620851-22621195 | A549 | lung: | n/a | chr19:22621023-22621034 |
49 | CEBPB | chr19:22903066-22903342 | A549 | lung: | n/a | n/a |
50 | CEBPB | chr19:22997001-22997613 | HepG2 | liver: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:22816508-22816558 | Hela-S3 | cervix: | n/a |
2 | chr19:22606486-22606536 | HRE | kidney: | n/a |
3 | chr19:22798522-22798572 | RPTEC | kidney: | n/a |
4 | chr19:22715575-22715625 | NT2-D1 | testis: | n/a |
5 | chr19:22816508-22816558 | Hela-S3 | cervix: | n/a |
6 | chr19:22606486-22606536 | HRE | kidney: | n/a |
7 | chr19:22798522-22798572 | RPTEC | kidney: | n/a |
8 | chr19:22715575-22715625 | NT2-D1 | testis: | n/a |
9 | chr19:22838537-22838587 | HepG2 | liver: | n/a |
10 | chr19:22806448-22806498 | GM12892 | blood: | n/a |
11 | chr19:22697330-22697380 | AG04450 | lung: | fetal |
12 | chr19:22605234-22605284 | HRPEpiC | eye: | n/a |
13 | chr19:22702156-22702206 | IMR90 | lung: | fetal |
14 | chr19:22817096-22817146 | HL-60 | blood: | n/a |
15 | chr19:23079190-23079240 | AG04449 | skin: | fetal |
16 | chr19:22800693-22800743 | HMEC | breast: | n/a |
17 | chr19:22715575-22715625 | BJ | skin: | n/a |
18 | chr19:22604979-22605029 | K562 | blood: | n/a |
19 | chr19:22801034-22801084 | ProgFib | skin: | n/a |
20 | chr19:22806184-22806234 | HCT-116 | colon: | n/a |
21 | chr19:22817371-22817421 | SK-N-SH | brain: | n/a |
22 | chr19:22444509-22444559 | AG04449 | skin: | fetal |
23 | chr19:22803398-22803448 | GM12878 | blood: | n/a |
24 | chr19:23084470-23084520 | HIPEpiC | eye: | n/a |
25 | chr19:22444509-22444559 | ProgFib | skin: | n/a |
26 | chr19:22809024-22809074 | Hepatocyte | liver: | n/a |
27 | chr19:22891847-22891897 | HEEpiC | esophagus: | n/a |
28 | chr19:22469533-22469583 | HEEpiC | esophagus: | n/a |
29 | chr19:22701260-22701310 | NB4 | blood: | n/a |
30 | chr19:22702156-22702206 | AG04449 | skin: | fetal |
31 | chr19:22990378-22990428 | PFSK-1 | brain: | n/a |
32 | chr19:22444509-22444559 | HUVEC | blood vessel: | n/a |
33 | chr19:22466877-22466927 | ECC-1 | luminal epithelium: | n/a |
34 | chr19:23077806-23077856 | HL-60 | blood: | n/a |
35 | chr19:22701260-22701310 | GM06990 | blood: | n/a |
36 | chr19:22604979-22605029 | CMK | blood: | n/a |
37 | chr19:22701260-22701310 | HEK293 | kidney: | embryo |
38 | chr19:22806448-22806498 | AG10803 | skin: | n/a |
39 | chr19:22816896-22816946 | ovcar-3 | ovarian: | n/a |
40 | chr19:23086385-23086435 | SAEC | small airway: | n/a |
41 | chr19:22804548-22804598 | H1-hESC | embryonic stem cell: | embryo |
42 | chr19:22801034-22801084 | Caco-2 | colon: | n/a |
43 | chr19:22715697-22715747 | HCM | heart: | n/a |
44 | chr19:22699252-22699302 | SKMC | muscle: | n/a |
45 | chr19:22817096-22817146 | SK-N-MC | brain: | n/a |
46 | chr19:22988136-22988186 | H1-hESC | embryonic stem cell: | embryo |
47 | chr19:22718926-22718976 | SK-N-SH | brain: | n/a |
48 | chr19:22988442-22988492 | BE2_C | brain: | n/a |
49 | chr19:22816508-22816558 | NHBE | bronchial: | n/a |
50 | chr19:22953960-22954010 | HL-60 | blood: | n/a |
(count:3 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-AC024563.1-6 | chr19:22897254-22897364 | ENSG00000268981.1 |
2 | lnc-ZNF98-9 | chr19:22697187-22697432 | NONHSAT063793 |
3 | lnc-ZNF730-4 | chr19:23102467-23102684 | NONHSAT063828 |
4 | lnc-ZNF492-1 | chr19:22716002-22716297 | XLOC_013014 |
5 | lnc-AC024563.1-1 | chr19:22798359-22799355 | ENSG00000268038.1 |
6 | lnc-ZNF729-1 | chr19:22467343-22467809 | XLOC_013011 |
7 | lnc-ZNF676-1 | chr19:22428580-22428995 | XLOC_013266 |
8 | lnc-AC024563.1-1 | chr19:22806659-22806773 | ENSG00000268038.1 |
9 | lnc-AC024563.1-6 | chr19:22854156-22854260 | ENSG00000268981.1 |
10 | lnc-ZNF99-2 | chr19:23128467-23128510 | XLOC_013271 |
11 | lnc-ZNF98-2 | chr19:22703797-22704068 | ENSG00000260599.1 |
12 | lnc-ZNF98-8 | chr19:22482336-22482670 | NONHSAT063779 |
13 | lnc-AC024563.1-1 | chr19:22806659-22806773 | XLOC_013269 |
14 | lnc-AC024563.1-6 | chr19:22899565-22899793 | ENSG00000268981.1 |
15 | lnc-ZNF98-9 | chr19:22715141-22715368 | NONHSAT063793 |
16 | lnc-ZNF676-1 | chr19:22439228-22439237 | XLOC_013266 |
17 | lnc-ZNF676-1 | chr19:22429547-22429561 | NONHSAT063770 |
18 | lnc-ZNF492-3 | chr19:22675412-22676132 | XLOC_013012 |
19 | lnc-AC011467.1-3 | chr19:22956655-22957226 | NONHSAT063821 |
20 | lnc-ZNF676-1 | chr19:22428580-22428688 | NONHSAT063770 |
21 | lnc-ZNF98-5 | chr19:22640131-22640292 | NONHSAT063790 |
22 | lnc-ZNF730-4 | chr19:23101230-23101476 | XLOC_013016 |
23 | lnc-ZNF98-4 | chr19:22631148-22631579 | NONHSAT063788 |
24 | lnc-ZNF98-2 | chr19:22707423-22707539 | ENSG00000260599.1 |
25 | lnc-AC011467.1-2 | chr19:22882154-22882487 | NONHSAT063816 |
26 | lnc-ZNF676-4 | chr19:22598499-22598613 | ucscGeneNc_uc002nqv_2 |
27 | lnc-AC011467.1-5 | chr19:23031998-23032095 | NONHSAT063825 |
28 | lnc-AC011467.1-1 | chr19:23003902-23004064 | XLOC_013015 |
29 | lnc-ZNF730-4 | chr19:23102895-23103160 | XLOC_013016 |
30 | lnc-ZNF729-4 | chr19:22545391-22545627 | NONHSAT063784 |
31 | lnc-ZNF676-1 | chr19:22427343-22428234 | NONHSAT063770 |
32 | lnc-ZNF98-5 | chr19:22640608-22641014 | NONHSAT063790 |
33 | lnc-ZNF730-4 | chr19:23098271-23098302 | NONHSAT063831 |
34 | lnc-ZNF492-1 | chr19:22719309-22719350 | XLOC_013014 |
35 | lnc-ZNF98-9 | chr19:22715141-22715287 | NONHSAT063787 |
36 | lnc-AC024563.1-6 | chr19:22848354-22848526 | ENSG00000268981.1 |
37 | lnc-ZNF729-3 | chr19:22534271-22534424 | NONHSAT063783 |
38 | lnc-ZNF98-2 | chr19:22704753-22704995 | ENSG00000260599.1 |
39 | lnc-ZNF492-4 | chr19:22803285-22803526 | NONHSAT063813 |
40 | lnc-ZNF98-1 | chr19:22514172-22514194 | XLOC_013267 |
41 | lnc-AC024563.1-6 | chr19:22880922-22881173 | ENSG00000268981.1 |
42 | lnc-ZNF729-6 | chr19:22638790-22639261 | ENSG00000270947.1 |
43 | lnc-ZNF99-1 | chr19:23089888-23090041 | ENSG00000268296.1 |
44 | lnc-ZNF730-4 | chr19:23102895-23103055 | NONHSAT063831 |
45 | lnc-AC024563.1-2 | chr19:22778876-22778965 | NONHSAT063804 |
46 | lnc-ZNF98-6 | chr19:22506254-22506708 | NONHSAT063780 |
47 | lnc-ZNF676-1 | chr19:22427128-22427457 | XLOC_013266 |
48 | lnc-ZNF676-1 | chr19:22428580-22428995 | XLOC_013266 |
49 | lnc-AC011467.1-5 | chr19:23039920-23040249 | NONHSAT063825 |
50 | lnc-ZNF676-1 | chr19:22426056-22428149 | ENSG00000267872.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ZNF729 | TF binding region |
ENSG00000268589 | TF binding region |
VN1R85P | TF binding region |
ENSG00000269316 | TF binding region |
ZNF723 | TF binding region |
RN7SL860P | TF binding region |
ZNF99 | TF binding region |
ENSG00000260599 | TF binding region |
ENSG00000268038 | TF binding region |
ENSG00000270191 | TF binding region |
ENSG00000268823 | TF binding region |
ZNF849P | TF binding region |
ZNF209P | TF binding region |
ENSG00000269364 | TF binding region |
ENSG00000267872 | TF binding region |
ENSG00000268830 | TF binding region |
ENSG00000268296 | TF binding region |
ENSG00000268079 | TF binding region |
ZNF676 | TF binding region |
RPL34P34 | TF binding region |
ENSG00000270317 | TF binding region |
ENSG00000270947 | TF binding region |
ENSG00000269332 | TF binding region |
ENSG00000270475 | TF binding region |
VN1R88P | TF binding region |
ENSG00000268685 | TF binding region |
ENSG00000269796 | TF binding region |
ENSG00000221790 | TF binding region |
RNU6-1179P | TF binding region |
ENSG00000271655 | TF binding region |
ENSG00000269025 | TF binding region |
ENSG00000180081 | TF binding region |
VN1R87P | TF binding region |
RPL34P33 | TF binding region |
ENSG00000269509 | TF binding region |
ENSG00000271149 | TF binding region |
ENSG00000269458 | TF binding region |
ENSG00000268981 | TF binding region |
ZNF98 | TF binding region |
ENSG00000268597 | TF binding region |
ENSG00000268717 | TF binding region |
ZNF492 | TF binding region |
ZNF729 | CpG island |
ENSG00000268589 | CpG island |
VN1R85P | CpG island |
ENSG00000269316 | CpG island |
ZNF723 | CpG island |
RN7SL860P | CpG island |
ZNF99 | CpG island |
ENSG00000260599 | CpG island |
ENSG00000268038 | CpG island |
ENSG00000270191 | CpG island |
ENSG00000268823 | CpG island |
ZNF849P | CpG island |
ZNF209P | CpG island |
ENSG00000269364 | CpG island |
ENSG00000267872 | CpG island |
ENSG00000268830 | CpG island |
ENSG00000268296 | CpG island |
ENSG00000268079 | CpG island |
ZNF676 | CpG island |
RPL34P34 | CpG island |
ENSG00000270317 | CpG island |
ENSG00000270947 | CpG island |
ENSG00000269332 | CpG island |
ENSG00000270475 | CpG island |
VN1R88P | CpG island |
ENSG00000268685 | CpG island |
ENSG00000269796 | CpG island |
ENSG00000221790 | CpG island |
RNU6-1179P | CpG island |
ENSG00000271655 | CpG island |
ENSG00000269025 | CpG island |
ENSG00000180081 | CpG island |
VN1R87P | CpG island |
RPL34P33 | CpG island |
ENSG00000269509 | CpG island |
ENSG00000271149 | CpG island |
ENSG00000269458 | CpG island |
ENSG00000268981 | CpG island |
ZNF98 | CpG island |
ENSG00000268597 | CpG island |
ENSG00000268717 | CpG island |
ZNF492 | CpG island |
ENSG00000269615 | chromatin interactions |
ENSG00000154359 | chromatin interactions |
CREBL2 | miRNA target sites |
PQBP1 | miRNA target sites |
CREBZF | miRNA target sites |
CEBPB | miRNA target sites |
PSME1 | miRNA target sites |
MRS2 | miRNA target sites |
EIF4E2 | miRNA target sites |
PHF19 | miRNA target sites |
MAP7 | miRNA target sites |
LASP1 | miRNA target sites |
FOXM1 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs113674168 | chr19:22359504-22359505 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs201506052 | chr19:22359517-22359518 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs376921071 | chr19:22359521-22359522 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs186938134 | chr19:22359523-22359524 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs150896117 | chr19:22359538-22359539 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs191358202 | chr19:22359543-22359544 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs563274806 | chr19:22359558-22359559 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs528645752 | chr19:22359580-22359581 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs539421240 | chr19:22359598-22359599 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs183375149 | chr19:22359611-22359612 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs565403360 | chr19:22359624-22359625 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs539130146 | chr19:22359656-22359657 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs187878409 | chr19:22359691-22359692 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs569305543 | chr19:22359697-22359698 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs536686777 | chr19:22359717-22359718 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs555593396 | chr19:22359739-22359740 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs573853846 | chr19:22359743-22359744 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs193172552 | chr19:22359790-22359791 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs536774570 | chr19:22359842-22359843 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs185021093 | chr19:22359853-22359854 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs139370510 | chr19:22359917-22359918 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs545498985 | chr19:22359956-22359957 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs141335857 | chr19:22360013-22360014 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs371160286 | chr19:22360022-22360023 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs147771435 | chr19:22360027-22360028 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs189348180 | chr19:22360028-22360029 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs530919775 | chr19:22360045-22360046 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs192693439 | chr19:22360072-22360073 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs561581829 | chr19:22360111-22360112 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs367926489 | chr19:22360123-22360124 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs547305825 | chr19:22360208-22360209 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs564401900 | chr19:22360220-22360221 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs112883809 | chr19:22360222-22360223 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
34 | rs59504091 | chr19:22360223-22360224 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs575092109 | chr19:22360237-22360238 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
36 | rs538927473 | chr19:22360239-22360240 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs184671708 | chr19:22360242-22360243 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs558941734 | chr19:22360264-22360265 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs374325816 | chr19:22360285-22360286 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs372869064 | chr19:22360303-22360304 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs682866 | chr19:22360309-22360310 | ZNF genes & repeats | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
42 | rs144434159 | chr19:22360318-22360319 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs567520255 | chr19:22360412-22360413 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs188293261 | chr19:22360416-22360417 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs35066480 | chr19:22360495-22360496 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs553334599 | chr19:22360507-22360508 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs180767143 | chr19:22360576-22360577 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs562228135 | chr19:22360598-22360599 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs3035023 | chr19:22360599-22360600 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs71822369 | chr19:22360608-22360609 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 16783165 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Prostate cancer | 16573809 | CNVD |
Chordoma | 18071362 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Oral cancer | 21386901 | CNVD |
ovarian endometriomas | 16273235 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Cervical cancer | 21063398 | CNVD |
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Lung cancer | 18438408 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Cancer | 21183584 | CNVD |
Colorectal cancer | 20459617 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Cancer | 20164920 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Breast cancer | 22522925 | CNVD |
Melanoma | 20877625 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Schizophrenia | 23813976 | CNVD |
Glioma | 20126413 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:22359400-22361200 | ZNF genes & repeats | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr19:22360400-22368800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
3 | chr19:22361800-22362800 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
4 | chr19:22361800-22365000 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
5 | chr19:22361800-22365600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
6 | chr19:22362200-22363000 | ZNF genes & repeats | Colon Smooth Muscle | Colon |
7 | chr19:22362200-22363200 | ZNF genes & repeats | Brain Angular Gyrus | brain |
8 | chr19:22362200-22363400 | ZNF genes & repeats | Brain Hippocampus Middle | brain |
9 | chr19:22362200-22365200 | ZNF genes & repeats | Liver | Liver |
10 | chr19:22362400-22365000 | ZNF genes & repeats | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
11 | chr19:22363200-22365000 | ZNF genes & repeats | Colon Smooth Muscle | Colon |
12 | chr19:22365000-22366200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
13 | chr19:22366200-22368200 | ZNF genes & repeats | Aorta | Aorta |
14 | chr19:22366200-22369800 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
15 | chr19:22366800-22368000 | ZNF genes & repeats | Left Ventricle | heart |
16 | chr19:22367000-22367600 | ZNF genes & repeats | Liver | Liver |
17 | chr19:22367000-22367800 | ZNF genes & repeats | Pancreas | Pancrea |
18 | chr19:22367000-22368200 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
19 | chr19:22367000-22369200 | ZNF genes & repeats | Colon Smooth Muscle | Colon |
20 | chr19:22368000-22373800 | Weak transcription | Left Ventricle | heart |
21 | chr19:22368200-22374000 | Weak transcription | Aorta | Aorta |
22 | chr19:22372200-22372800 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
23 | chr19:22373800-22374200 | ZNF genes & repeats | Left Ventricle | heart |
24 | chr19:22374000-22374600 | ZNF genes & repeats | Aorta | Aorta |
25 | chr19:22374000-22374800 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
26 | chr19:22374200-22374600 | ZNF genes & repeats | Colon Smooth Muscle | Colon |
27 | chr19:22374600-22376000 | Weak transcription | Aorta | Aorta |
28 | chr19:22374600-22377800 | Weak transcription | Colon Smooth Muscle | Colon |
29 | chr19:22374800-22376400 | Weak transcription | Right Ventricle | heart |
30 | chr19:22375400-22379200 | ZNF genes & repeats | Adipose Nuclei | Adipose |
31 | chr19:22376000-22377200 | ZNF genes & repeats | Brain Anterior Caudate | brain |
32 | chr19:22376000-22379200 | ZNF genes & repeats | Aorta | Aorta |
33 | chr19:22376400-22376800 | Strong transcription | Right Ventricle | heart |
34 | chr19:22376800-22377000 | ZNF genes & repeats | Stomach Smooth Muscle | stomach |
35 | chr19:22376800-22377200 | ZNF genes & repeats | Right Ventricle | heart |
36 | chr19:22377400-22377600 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
37 | chr19:22377800-22378200 | Strong transcription | Colon Smooth Muscle | Colon |
38 | chr19:22378200-22397600 | Weak transcription | Colon Smooth Muscle | Colon |
39 | chr19:22379200-22383400 | Weak transcription | Aorta | Aorta |
40 | chr19:22383400-22383600 | ZNF genes & repeats | Aorta | Aorta |
41 | chr19:22391400-22391600 | ZNF genes & repeats | Left Ventricle | heart |
42 | chr19:22391400-22391800 | ZNF genes & repeats | Aorta | Aorta |
43 | chr19:22391600-22395000 | Weak transcription | Left Ventricle | heart |
44 | chr19:22391800-22392200 | Weak transcription | Aorta | Aorta |
45 | chr19:22391800-22396200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
46 | chr19:22392000-22392600 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
47 | chr19:22392200-22393000 | Strong transcription | Aorta | Aorta |
48 | chr19:22392600-22397800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
49 | chr19:22393000-22394000 | Weak transcription | Aorta | Aorta |
50 | chr19:22394000-22394200 | ZNF genes & repeats | Aorta | Aorta |