Variant report

Variant	nsv544000
Chromosome Location	chr19:37274915-37458788
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1751)
CpG islands
(count:3907)
Chromatin interactive
region (count:58)
LncRNA
region (count:38)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:37328527-37329626	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:37407439-37407639	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:37340907-37341297	HepG2	liver:	n/a	n/a
4	ATF1	chr19:37328824-37329485	K562	blood:	n/a	n/a
5	ATF2	chr19:37341530-37341899	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr19:37288349-37288854	GM12878	blood:	n/a	n/a
7	ATF2	chr19:37288266-37288826	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF2	chr19:37288313-37288853	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr19:37328799-37329407	GM12878	blood:	n/a	n/a
10	ATF2	chr19:37328843-37329475	GM12878	blood:	n/a	n/a
11	ATF2	chr19:37288150-37288903	GM12878	blood:	n/a	n/a
12	ATF3	chr19:37407123-37407453	H1-hESC	embryonic stem cell:	n/a	chr19:37407148-37407156
13	BACH1	chr19:37406796-37407749	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr19:37288340-37288738	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr19:37329030-37329437	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr19:37340771-37342363	H1-hESC	embryonic stem cell:	n/a	n/a
17	BATF	chr19:37340499-37340785	GM12878	blood:	n/a	n/a
18	BATF	chr19:37329019-37329346	GM12878	blood:	n/a	n/a
19	BATF	chr19:37328877-37329423	GM12878	blood:	n/a	n/a
20	BCL11A	chr19:37338953-37339190	GM12878	blood:	n/a	n/a
21	BCLAF1	chr19:37340807-37342313	GM12878	blood:	n/a	n/a
22	BCLAF1	chr19:37340487-37340876	GM12878	blood:	n/a	n/a
23	BCLAF1	chr19:37406973-37407538	GM12878	blood:	n/a	chr19:37407255-37407264 chr19:37407385-37407398 chr19:37407195-37407204
24	BCLAF1	chr19:37328768-37329490	GM12878	blood:	n/a	chr19:37328976-37328984
25	BCLAF1	chr19:37328619-37329574	GM12878	blood:	n/a	chr19:37328976-37328984
26	BHLHE40	chr19:37340497-37342133	GM12878	blood:	n/a	n/a
27	BHLHE40	chr19:37288254-37288650	GM12878	blood:	n/a	n/a
28	BHLHE40	chr19:37328717-37329498	GM12878	blood:	n/a	chr19:37329058-37329074
29	BHLHE40	chr19:37329976-37330000	K562	blood:	n/a	n/a
30	BHLHE40	chr19:37407226-37407625	GM12878	blood:	n/a	chr19:37407387-37407403 chr19:37407364-37407380
31	BHLHE40	chr19:37330068-37330070	A549	lung:	n/a	n/a
32	BHLHE40	chr19:37328961-37329263	K562	blood:	n/a	chr19:37329058-37329074
33	BRCA1	chr19:37328965-37329531	H1-hESC	embryonic stem cell:	n/a	n/a
34	BRCA1	chr19:37288417-37288862	H1-hESC	embryonic stem cell:	n/a	chr19:37288775-37288782
35	BRCA1	chr19:37406852-37407051	HepG2	liver:	n/a	n/a
36	BRCA1	chr19:37406863-37407378	GM12878	blood:	n/a	n/a
37	BRCA1	chr19:37340791-37342011	H1-hESC	embryonic stem cell:	n/a	chr19:37341729-37341738
38	BRCA1	chr19:37328954-37329755	HepG2	liver:	n/a	n/a
39	BRCA1	chr19:37342206-37342225	GM12878	blood:	n/a	n/a
40	BRCA1	chr19:37340977-37342008	HepG2	liver:	n/a	chr19:37341729-37341738
41	BRCA1	chr19:37288525-37288715	GM12878	blood:	n/a	n/a
42	BRCA1	chr19:37406771-37407709	H1-hESC	embryonic stem cell:	n/a	n/a
43	BRCA1	chr19:37341252-37341986	GM12878	blood:	n/a	chr19:37341729-37341738
44	CEBPB	chr19:37406755-37407818	IMR90	lung:	n/a	n/a
45	CEBPB	chr19:37322087-37322331	IMR90	lung:	n/a	chr19:37322182-37322193
46	CEBPB	chr19:37322099-37322299	A549	lung:	n/a	chr19:37322182-37322193
47	CEBPB	chr19:37358231-37358415	HepG2	liver:	n/a	chr19:37358324-37358335
48	CEBPB	chr19:37322092-37322312	HepG2	liver:	n/a	chr19:37322182-37322193
49	CEBPB	chr19:37406812-37407114	HepG2	liver:	n/a	n/a
50	CEBPB	chr19:37440679-37440845	A549	lung:	n/a	n/a

(count:3907 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:37282931-37282981	SK-N-SH_RA	brain:	n/a
2	chr19:37288450-37288500	GM06990	blood:	n/a
3	chr19:37329498-37329548	SKMC	muscle:	n/a
4	chr19:37282931-37282981	SK-N-SH_RA	brain:	n/a
5	chr19:37288450-37288500	GM06990	blood:	n/a
6	chr19:37329498-37329548	SKMC	muscle:	n/a
7	chr19:37407374-37407424	SAEC	small airway:	n/a
8	chr19:37329403-37329453	HPAEpiC	pulmonary alveolar:	n/a
9	chr19:37407284-37407334	MCF10A-Er-Src	breast:	n/a
10	chr19:37288705-37288755	Jurkat	blood:	n/a
11	chr19:37288793-37288843	HEEpiC	esophagus:	n/a
12	chr19:37406949-37406999	SKMC	muscle:	n/a
13	chr19:37342585-37342635	BE2_C	brain:	n/a
14	chr19:37329381-37329431	LNCaP	prostate:	n/a
15	chr19:37407413-37407463	SKMC	muscle:	n/a
16	chr19:37341261-37341311	GM12892	blood:	n/a
17	chr19:37282931-37282981	MCF10A-Er-Src	breast:	n/a
18	chr19:37329500-37329550	AG04450	lung:	fetal
19	chr19:37341166-37341216	AoSMC	blood vessel:	n/a
20	chr19:37409826-37409876	NHBE	bronchial:	n/a
21	chr19:37341169-37341219	PFSK-1	brain:	n/a
22	chr19:37407216-37407266	HRPEpiC	eye:	n/a
23	chr19:37329431-37329481	LNCaP	prostate:	n/a
24	chr19:37282653-37282703	RPTEC	kidney:	n/a
25	chr19:37407257-37407307	SK-N-SH	brain:	n/a
26	chr19:37286158-37286208	SK-N-SH	brain:	n/a
27	chr19:37341103-37341153	PrEC	prostate:	n/a
28	chr19:37329517-37329567	ECC-1	luminal epithelium:	n/a
29	chr19:37329330-37329380	NB4	blood:	n/a
30	chr19:37282931-37282981	HCT-116	colon:	n/a
31	chr19:37288509-37288559	CMK	blood:	n/a
32	chr19:37407257-37407307	PFSK-1	brain:	n/a
33	chr19:37282931-37282981	HCPEpiC	choroid plexus:	n/a
34	chr19:37329403-37329453	GM19239	blood:	n/a
35	chr19:37328842-37328892	ECC-1	luminal epithelium:	n/a
36	chr19:37407413-37407463	NHBE	bronchial:	n/a
37	chr19:37341078-37341128	HCF	heart:	n/a
38	chr19:37406349-37406399	CMK	blood:	n/a
39	chr19:37407486-37407536	SK-N-MC	brain:	n/a
40	chr19:37329448-37329498	HCM	heart:	n/a
41	chr19:37407257-37407307	AG09319	gingival:	n/a
42	chr19:37341870-37341920	PANC-1	pancreas:	n/a
43	chr19:37407284-37407334	Hepatocyte	liver:	n/a
44	chr19:37341373-37341423	Jurkat	blood:	n/a
45	chr19:37288705-37288755	HCPEpiC	choroid plexus:	n/a
46	chr19:37329498-37329548	HUVEC	blood vessel:	n/a
47	chr19:37288509-37288559	AG10803	skin:	n/a
48	chr19:37341103-37341153	HEEpiC	esophagus:	n/a
49	chr19:37329431-37329481	AG09319	gingival:	n/a
50	chr19:37329274-37329324	IMR90	lung:	fetal

(count:58 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:37341751..37343883-chr19:37348520..37351258,2	K562	blood:
2	chr19:37402448..37404618-chr19:37405463..37407897,2	MCF-7	breast:
3	chr19:37328893..37331026-chr19:37332754..37334779,3	K562	blood:
4	chr19:37321003..37323816-chr19:37327418..37329618,3	MCF-7	breast:
5	chr19:37428613..37430520-chr19:37430554..37432406,2	MCF-7	breast:
6	chr19:37411760..37413673-chr19:37428843..37431824,2	MCF-7	breast:
7	chr19:37339729..37341977-chr19:37344945..37346837,2	K562	blood:
8	chr19:37332133..37336118-chr19:37338996..37342341,4	MCF-7	breast:
9	chr19:37331659..37333471-chr19:37334083..37336419,2	MCF-7	breast:
10	chr19:37323948..37326050-chr19:37340760..37342851,2	MCF-7	breast:
11	chr19:37327731..37330688-chr19:37341355..37343335,2	K562	blood:
12	chr19:37287538..37289947-chr19:37340425..37342708,2	MCF-7	breast:
13	chr19:37341751..37345172-chr19:37348520..37351258,3	K562	blood:
14	chr19:37368925..37371871-chr19:37383138..37385642,2	MCF-7	breast:
15	chr19:37341026..37342586-chr19:37347410..37350051,2	MCF-7	breast:
16	chr19:37309306..37311965-chr19:37314564..37316601,2	MCF-7	breast:
17	chr19:37342451..37344780-chr19:37351760..37354112,2	K562	blood:
18	chr19:37316189..37318568-chr19:37320159..37322444,2	K562	blood:
19	chr19:37329308..37331359-chr19:37364409..37366170,2	K562	blood:
20	chr19:37341751..37343883-chr19:37348520..37351258,2	K562	blood:
21	chr19:37331659..37333471-chr19:37334083..37336419,2	MCF-7	breast:
22	chr19:37327752..37331008-chr19:37336124..37344037,12	MCF-7	breast:
23	chr19:37368925..37371871-chr19:37383138..37385642,2	MCF-7	breast:
24	chr19:37328191..37330014-chr19:37367737..37370320,2	MCF-7	breast:
25	chr19:37309306..37311965-chr19:37314564..37316601,2	MCF-7	breast:
26	chr19:37329308..37331359-chr19:37364409..37366170,2	K562	blood:
27	chr19:37341916..37344029-chr19:37407089..37408811,2	MCF-7	breast:
28	chr19:37308302..37310543-chr19:37312851..37314907,2	K562	blood:
29	chr19:37316189..37318568-chr19:37320159..37322444,2	K562	blood:
30	chr19:37316955..37318690-chr19:37340374..37342532,2	MCF-7	breast:
31	chr19:37411760..37413673-chr19:37428843..37431824,2	MCF-7	breast:
32	chr19:37327731..37330688-chr19:37341355..37343335,2	K562	blood:
33	chr19:37287538..37289947-chr19:37340425..37342708,2	MCF-7	breast:
34	chr19:37341916..37344029-chr19:37407089..37408811,2	MCF-7	breast:
35	chr19:37327831..37331190-chr19:37339964..37343241,7	MCF-7	breast:
36	chr19:37341026..37342586-chr19:37347410..37350051,2	MCF-7	breast:
37	chr19:37417109..37418736-chr19:37419934..37422422,2	MCF-7	breast:
38	chr19:37329288..37331381-chr19:37334889..37337614,2	K562	blood:
39	chr19:37327831..37331190-chr19:37339964..37343241,7	MCF-7	breast:
40	chr19:37335646..37338151-chr19:37339338..37341642,2	K562	blood:
41	chr19:37341751..37345172-chr19:37348520..37351258,3	K562	blood:
42	chr19:36629161..36631921-chr19:37341375..37343285,2	MCF-7	breast:
43	chr19:37428613..37430520-chr19:37430554..37432406,2	MCF-7	breast:
44	chr19:37340586..37343118-chr19:37344104..37346997,2	MCF-7	breast:
45	chr19:37329288..37331381-chr19:37334889..37337614,2	K562	blood:
46	chr19:37328417..37330040-chr19:37708183..37710302,2	MCF-7	breast:
47	chr19:37288230..37290127-chr19:37296601..37299448,2	MCF-7	breast:
48	chr19:37290133..37291956-chr19:37293759..37296212,2	MCF-7	breast:
49	chr19:37325206..37326948-chr19:37327588..37329435,2	MCF-7	breast:
50	chr19:37338913..37342435-chr19:37343992..37346462,3	K562	blood:

(count:38 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF790-1	chr19:37341779-37342087	ENSG00000254435.1
2	lnc-ZNF345-1	chr19:37316282-37316424	NONHSAT066049
3	lnc-ZNF345-1	chr19:37292778-37292835	NONHSAT066050
4	lnc-ZNF345-2	chr19:37403629-37403931	NONHSAT066054
5	lnc-ZNF345-2	chr19:37383720-37383887	NONHSAT066054
6	lnc-ZNF345-2	chr19:37341832-37341870	NONHSAT066054
7	lnc-ZNF345-1	chr19:37288452-37288713	NONHSAT066049
8	lnc-ZNF345-1	chr19:37318552-37319003	ENSG00000247207
9	lnc-ZNF345-1	chr19:37288465-37288713	ENSG00000247207
10	lnc-ZNF345-1	chr19:37318552-37319013	NONHSAT066050
11	lnc-ZNF345-2	chr19:37342647-37342806	NONHSAT066056
12	lnc-ZNF345-1	chr19:37292778-37292835	ENSG00000267254.1
13	lnc-ZNF345-1	chr19:37314633-37314723	NONHSAT066050
14	lnc-ZNF345-1	chr19:37314633-37314723	NONHSAT066049
15	lnc-ZNF345-2	chr19:37383720-37384120	NONHSAT066053
16	lnc-ZNF345-2	chr19:37345352-37345496	NONHSAT066057
17	lnc-ZNF345-2	chr19:37342732-37342806	NONHSAT066055
18	lnc-ZNF345-2	chr19:37383720-37383936	NONHSAT066055
19	lnc-ZNF345-2	chr19:37383720-37383932	NONHSAT066057
20	lnc-ZNF790-1	chr19:37342310-37342418	ENSG00000254435.1
21	lnc-ZNF345-2	chr19:37342754-37342806	NONHSAT066057
22	lnc-ZNF345-2	chr19:37342732-37342806	NONHSAT066053
23	lnc-ZNF345-1	chr19:37288465-37288713	NONHSAT066050
24	lnc-ZNF345-1	chr19:37318552-37319013	NONHSAT066049
25	lnc-ZNF345-2	chr19:37342732-37342806	NONHSAT066054
26	lnc-ZNF345-1	chr19:37303412-37303508	ENSG00000267254.1
27	lnc-ZNF345-2	chr19:37342557-37342625	NONHSAT066055
28	lnc-ZNF345-4	chr19:37389239-37389247	l_1678_chr19:37389066-37399110_whiteBloodCell
29	lnc-ZNF345-4	chr19:37399035-37399110	l_1678_chr19:37389066-37399110_whiteBloodCell
30	lnc-ZNF345-1	chr19:37292111-37292142	ENSG00000267254.1
31	lnc-ZNF345-2	chr19:37341788-37341870	NONHSAT066053
32	lnc-ZNF345-4	chr19:37389067-37389188	l_1678_chr19:37389066-37399110_whiteBloodCell
33	lnc-ZNF345-1	chr19:37292105-37292142	NONHSAT066049
34	lnc-ZNF345-1	chr19:37292778-37292835	NONHSAT066049
35	lnc-ZNF345-2	chr19:37383720-37383936	NONHSAT066056
36	lnc-ZNF345-1	chr19:37292778-37292835	ENSG00000247207
37	lnc-ZNF345-1	chr19:37318552-37319017	ENSG00000267254.1
38	lnc-ZNF345-1	chr19:37314633-37314723	ENSG00000247207

No data

Variant related genes	Relation type
ZNF568	TF binding region
ENSG00000206669	TF binding region
ZNF790	TF binding region
RPL31P61	TF binding region
ENSG00000267254	TF binding region
ZNF345	TF binding region
ZNF829	TF binding region
ZNF568	CpG island
ENSG00000206669	CpG island
ZNF790	CpG island
RPL31P61	CpG island
ENSG00000267254	CpG island
ZNF345	CpG island
ZNF829	CpG island
ENSG00000197863	chromatin interactions
ENSG00000185869	chromatin interactions
ENSG00000206669	chromatin interactions
ENSG00000251247	chromatin interactions
ENSG00000188283	chromatin interactions
ENSG00000245680	chromatin interactions
ENSG00000198453	chromatin interactions
ENSG00000126247	chromatin interactions
ENSG00000267254	chromatin interactions
GIGYF1	miRNA target sites
KCTD2	miRNA target sites
CDKN1B	miRNA target sites
FAM47B	miRNA target sites

Extended variants
information (count: 6367 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:6367 , 50 per page) page: 1 2 3 4 5 6 7 ... 128

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551540136	chr19:37274956-37274957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs143355399	chr19:37274996-37274997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs368343098	chr19:37275094-37275095	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs554941586	chr19:37275122-37275123	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs199746307	chr19:37275147-37275148	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs190029065	chr19:37275153-37275154	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs181143046	chr19:37275213-37275214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185333487	chr19:37275226-37275227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577763344	chr19:37275229-37275230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190590864	chr19:37275268-37275269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545144933	chr19:37275337-37275338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs537251704	chr19:37275338-37275339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553692330	chr19:37275365-37275366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs571928167	chr19:37275425-37275426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1227801	chr19:37275430-37275431	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs141555283	chr19:37275465-37275466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs531674550	chr19:37275466-37275467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs1227802	chr19:37275558-37275559	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs71356020	chr19:37275571-37275572	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs532443456	chr19:37275572-37275573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs1227803	chr19:37275585-37275586	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs150825948	chr19:37275593-37275594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs2385567	chr19:37275596-37275597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530037456	chr19:37275616-37275617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs548604711	chr19:37275701-37275702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570212012	chr19:37275728-37275729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187434618	chr19:37275743-37275744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs191940937	chr19:37275820-37275821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs571068665	chr19:37275827-37275828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs139566520	chr19:37275912-37275913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs542616957	chr19:37275936-37275937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs368973098	chr19:37275961-37275962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs553567698	chr19:37275966-37275967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545344183	chr19:37275989-37275990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs557658352	chr19:37275996-37275997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572155763	chr19:37275997-37275998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542251511	chr19:37276029-37276030	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs372750096	chr19:37276085-37276086	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs183051332	chr19:37276087-37276088	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs575887188	chr19:37276093-37276094	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs543335890	chr19:37276104-37276105	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs564704867	chr19:37276154-37276155	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs532160495	chr19:37276156-37276157	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs575702720	chr19:37276174-37276175	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs541266923	chr19:37276286-37276287	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs559583725	chr19:37276300-37276301	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs530220163	chr19:37276391-37276392	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs113178181	chr19:37276394-37276395	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs548241949	chr19:37276428-37276429	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs570051660	chr19:37276429-37276430	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:6343 , 50 per page) page: 1 2 3 4 5 6 7 ... 127

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37267400-37282400	Weak transcription	Ovary	ovary
2	chr19:37267600-37275000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr19:37267600-37282000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37275000-37275200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr19:37276000-37280600	ZNF genes & repeats	Liver	Liver
6	chr19:37277600-37278000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:37278000-37280000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:37280000-37281000	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:37281800-37282000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr19:37281800-37282000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:37281800-37282200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:37281800-37282200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:37281800-37282600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:37281800-37283000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
15	chr19:37281800-37283200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr19:37281800-37283200	Enhancers	Placenta	Placenta
17	chr19:37282000-37282200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr19:37282000-37282200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr19:37282000-37282400	Enhancers	Fetal Heart	heart
20	chr19:37282000-37282600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr19:37282000-37282600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:37282000-37282600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:37282000-37282600	Enhancers	Brain Cingulate Gyrus	brain
24	chr19:37282000-37283000	Active TSS	Primary T cells from cord blood	blood
25	chr19:37282000-37283000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr19:37282000-37283200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr19:37282000-37283200	Active TSS	Brain Anterior Caudate	brain
28	chr19:37282000-37283400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:37282000-37283400	Active TSS	Brain Substantia Nigra	brain
30	chr19:37282200-37282400	Enhancers	Fetal Lung	lung
31	chr19:37282200-37282600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr19:37282200-37282600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr19:37282200-37282600	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr19:37282200-37282800	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr19:37282200-37282800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr19:37282200-37283000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:37282200-37283000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:37282200-37283000	ZNF genes & repeats	Brain Germinal Matrix	brain
39	chr19:37282200-37283000	Active TSS	Colon Smooth Muscle	Colon
40	chr19:37282200-37283200	Active TSS	Right Ventricle	heart
41	chr19:37282200-37283200	Active TSS	Osteobl	bone
42	chr19:37282400-37282600	Enhancers	Fetal Muscle Trunk	muscle
43	chr19:37282400-37282600	Flanking Active TSS	Left Ventricle	heart
44	chr19:37282400-37282600	Active TSS	Placenta Amnion	Placenta Amnion
45	chr19:37282400-37282800	Active TSS	H9 Cell Line	embryonic stem cell
46	chr19:37282400-37282800	Active TSS	Fetal Kidney	kidney
47	chr19:37282400-37283000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:37282400-37283000	Active TSS	Brain Angular Gyrus	brain
49	chr19:37282400-37283000	Active TSS	Brain Hippocampus Middle	brain
50	chr19:37282400-37283000	Active TSS	Stomach Smooth Muscle	stomach

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