Variant report
Variant | nsv544008 |
---|---|
Chromosome Location | chr19:43141984-43741311 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:7646)
- CpG islands (count:4092)
- Chromatin interactive region (count:26)
- LncRNA region (count:84)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr19:43208643-43208644 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr19:43733581-43733686 | K562 | blood: | n/a | n/a |
3 | ATF3 | chr19:43335307-43336092 | A549 | lung: | n/a | n/a |
4 | ATF3 | chr19:43686016-43686763 | A549 | lung: | n/a | n/a |
5 | ATF3 | chr19:43336336-43336928 | A549 | lung: | n/a | n/a |
6 | ATF3 | chr19:43355048-43355947 | A549 | lung: | n/a | n/a |
7 | ATF3 | chr19:43336349-43336838 | A549 | lung: | n/a | n/a |
8 | ATF3 | chr19:43355412-43355889 | A549 | lung: | n/a | n/a |
9 | ATF3 | chr19:43335349-43336094 | A549 | lung: | n/a | n/a |
10 | BATF | chr19:43246213-43246502 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr19:43692257-43692526 | GM12878 | blood: | n/a | n/a |
12 | BATF | chr19:43361555-43361754 | GM12878 | blood: | n/a | n/a |
13 | BATF | chr19:43179178-43179402 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr19:43552186-43552537 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
15 | BATF | chr19:43271446-43271728 | GM12878 | blood: | n/a | n/a |
16 | BATF | chr19:43588401-43588710 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr19:43302238-43302533 | GM12878 | blood: | n/a | chr19:43302344-43302355 |
18 | BATF | chr19:43552261-43552460 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
19 | BATF | chr19:43692397-43692675 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr19:43738081-43738296 | GM12878 | blood: | n/a | chr19:43738185-43738196 |
21 | BATF | chr19:43591924-43592150 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr19:43613006-43613315 | GM12878 | blood: | n/a | chr19:43613110-43613121 |
23 | BATF | chr19:43442962-43443231 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr19:43711409-43711658 | GM12878 | blood: | n/a | n/a |
25 | BCL11A | chr19:43179101-43179287 | GM12878 | blood: | n/a | n/a |
26 | BCL3 | chr19:43335292-43335990 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
27 | BCL3 | chr19:43354910-43356058 | A549 | lung: | n/a | n/a |
28 | BCL3 | chr19:43402518-43403428 | A549 | lung: | n/a | n/a |
29 | BCL3 | chr19:43323095-43323355 | GM12878 | blood: | n/a | n/a |
30 | BCL3 | chr19:43336159-43337656 | A549 | lung: | n/a | chr19:43336227-43336234 |
31 | BCL3 | chr19:43335242-43336126 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
32 | BCL3 | chr19:43354946-43356043 | A549 | lung: | n/a | n/a |
33 | BCL3 | chr19:43297507-43298116 | A549 | lung: | n/a | n/a |
34 | BCL3 | chr19:43336292-43336877 | A549 | lung: | n/a | n/a |
35 | BCL3 | chr19:43336972-43337663 | A549 | lung: | n/a | n/a |
36 | BHLHE40 | chr19:43733601-43733620 | K562 | blood: | n/a | n/a |
37 | BHLHE40 | chr19:43709323-43709343 | K562 | blood: | n/a | n/a |
38 | BHLHE40 | chr19:43427453-43427512 | GM12878 | blood: | n/a | n/a |
39 | BHLHE40 | chr19:43355572-43355890 | A549 | lung: | n/a | n/a |
40 | BHLHE40 | chr19:43385480-43385517 | K562 | blood: | n/a | n/a |
41 | BHLHE40 | chr19:43582147-43582203 | K562 | blood: | n/a | n/a |
42 | BRCA1 | chr19:43265411-43265577 | Hela-S3 | cervix: | n/a | n/a |
43 | BRCA1 | chr19:43297623-43297950 | Hela-S3 | cervix: | n/a | n/a |
44 | BRCA1 | chr19:43624776-43624937 | Hela-S3 | cervix: | n/a | n/a |
45 | BRCA1 | chr19:43436723-43436914 | Hela-S3 | cervix: | n/a | n/a |
46 | BRCA1 | chr19:43168346-43168356 | GM12878 | blood: | n/a | n/a |
47 | BRCA1 | chr19:43525934-43526309 | Hela-S3 | cervix: | n/a | n/a |
48 | BRCA1 | chr19:43355288-43355847 | Hela-S3 | cervix: | n/a | n/a |
49 | CBX3 | chr19:43385505-43385738 | K562 | blood: | n/a | n/a |
50 | CBX3 | chr19:43190821-43191075 | K562 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43355659-43355709 | Jurkat | blood: | n/a |
2 | chr19:43709360-43709410 | SK-N-MC | brain: | n/a |
3 | chr19:43203368-43203418 | HIPEpiC | eye: | n/a |
4 | chr19:43673501-43673551 | NHBE | bronchial: | n/a |
5 | chr19:43531821-43531871 | ECC-1 | luminal epithelium: | n/a |
6 | chr19:43355659-43355709 | Jurkat | blood: | n/a |
7 | chr19:43709360-43709410 | SK-N-MC | brain: | n/a |
8 | chr19:43203368-43203418 | HIPEpiC | eye: | n/a |
9 | chr19:43673501-43673551 | NHBE | bronchial: | n/a |
10 | chr19:43531821-43531871 | ECC-1 | luminal epithelium: | n/a |
11 | chr19:43442693-43442743 | BJ | skin: | n/a |
12 | chr19:43673501-43673551 | HEEpiC | esophagus: | n/a |
13 | chr19:43442809-43442859 | ovcar-3 | ovarian: | n/a |
14 | chr19:43709832-43709882 | AG10803 | skin: | n/a |
15 | chr19:43691930-43691980 | H1-hESC | embryonic stem cell: | embryo |
16 | chr19:43383986-43384036 | AG09309 | skin: | n/a |
17 | chr19:43245921-43245971 | Caco-2 | colon: | n/a |
18 | chr19:43710277-43710327 | ECC-1 | luminal epithelium: | n/a |
19 | chr19:43690622-43690672 | HUVEC | blood vessel: | n/a |
20 | chr19:43198154-43198204 | HepG2 | liver: | n/a |
21 | chr19:43359870-43359920 | AG04450 | lung: | fetal |
22 | chr19:43244680-43244730 | HRPEpiC | eye: | n/a |
23 | chr19:43361218-43361268 | Caco-2 | colon: | n/a |
24 | chr19:43423176-43423226 | BJ | skin: | n/a |
25 | chr19:43385100-43385150 | HCT-116 | colon: | n/a |
26 | chr19:43244680-43244730 | LNCaP | prostate: | n/a |
27 | chr19:43383986-43384036 | HPAEpiC | pulmonary alveolar: | n/a |
28 | chr19:43442484-43442534 | GM19239 | blood: | n/a |
29 | chr19:43691878-43691928 | MCF10A-Er-Src | breast: | n/a |
30 | chr19:43410455-43410505 | HRCEpiC | kidney: | n/a |
31 | chr19:43384780-43384830 | Hela-S3 | cervix: | n/a |
32 | chr19:43385047-43385097 | IMR90 | lung: | fetal |
33 | chr19:43269832-43269882 | NH-A | brain: | n/a |
34 | chr19:43710277-43710327 | HUVEC | blood vessel: | n/a |
35 | chr19:43711064-43711114 | PANC-1 | pancreas: | n/a |
36 | chr19:43360229-43360279 | GM12891 | blood: | n/a |
37 | chr19:43257346-43257396 | HepG2 | liver: | n/a |
38 | chr19:43580600-43580650 | HPAEpiC | pulmonary alveolar: | n/a |
39 | chr19:43423119-43423169 | GM19239 | blood: | n/a |
40 | chr19:43530623-43530673 | T-47D | breast: | n/a |
41 | chr19:43245921-43245971 | GM12892 | blood: | n/a |
42 | chr19:43709754-43709804 | HepG2 | liver: | n/a |
43 | chr19:43588055-43588105 | MCF-7 | breast: | n/a |
44 | chr19:43410455-43410505 | HRPEpiC | eye: | n/a |
45 | chr19:43423176-43423226 | NHBE | bronchial: | n/a |
46 | chr19:43588069-43588119 | Caco-2 | colon: | n/a |
47 | chr19:43709754-43709804 | AG04450 | lung: | fetal |
48 | chr19:43360229-43360279 | GM12878 | blood: | n/a |
49 | chr19:43580600-43580650 | MCF-7 | breast: | n/a |
50 | chr19:43587500-43587550 | U87 | brain: | n/a |
(count:26 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43167897..43169449-chr19:43169988..43172834,2 | MCF-7 | breast: | |
2 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
3 | chr19:43197619..43198590-chr19:43246174..43246898,3 | MCF-7 | breast: | |
4 | chr19:43110921..43111495-chr19:43166501..43167328,2 | MCF-7 | breast: | |
5 | chr19:43149390..43151656-chr19:43158079..43159963,2 | MCF-7 | breast: | |
6 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
7 | chr19:43197619..43198590-chr19:43246174..43246898,3 | MCF-7 | breast: | |
8 | chr19:43265768..43266290-chr19:43769932..43770473,2 | MCF-7 | breast: | |
9 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
10 | chr19:43531581..43532101-chr2:1136088..1136613,2 | MCF-7 | breast: | |
11 | chr19:43167897..43169449-chr19:43169988..43172834,2 | MCF-7 | breast: | |
12 | chr19:43139185..43139985-chr19:43166999..43167914,2 | MCF-7 | breast: | |
13 | chr19:43196586..43198250-chr19:43213574..43216161,2 | MCF-7 | breast: | |
14 | chr19:43196586..43198250-chr19:43213574..43216161,2 | MCF-7 | breast: | |
15 | chr19:43197626..43198528-chr19:43245881..43246809,2 | MCF-7 | breast: | |
16 | chr19:43197626..43198528-chr19:43245881..43246809,2 | MCF-7 | breast: | |
17 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
18 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
19 | chr19:43148558..43149434-chr20:53015100..53015659,2 | MCF-7 | breast: | |
20 | chr19:43678340..43681333-chr19:43698109..43700078,2 | MCF-7 | breast: | |
21 | chr19:43138891..43139734-chr19:43166436..43166942,2 | MCF-7 | breast: | |
22 | chr19:43139154..43139986-chr19:43246322..43246897,2 | MCF-7 | breast: | |
23 | chr19:43110594..43111450-chr19:43197610..43198160,2 | MCF-7 | breast: | |
24 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
25 | chr19:43297087..43297875-chr19:43423005..43423976,2 | MCF-7 | breast: | |
26 | chr19:43608137..43608719-chr19:43820621..43821519,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PSG2-3 | chr19:43600608-43600855 | NONHSAT066582 |
2 | lnc-PSG9-2 | chr19:43728324-43728464 | NONHSAT066591 |
3 | lnc-PSG6-1 | chr19:43440309-43440647 | NONHSAT066574 |
4 | lnc-PSG9-2 | chr19:43724140-43724394 | NONHSAT066593 |
5 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT146988 |
6 | lnc-PSG6-1 | chr19:43441165-43441330 | NR_073194 |
7 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT066571 |
8 | lnc-PSG9-2 | chr19:43724783-43725023 | NONHSAT066593 |
9 | lnc-PSG2-2 | chr19:43576503-43576781 | NONHSAT066580 |
10 | lnc-PSG5-1 | chr19:43699147-43699301 | NONHSAT066589 |
11 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT066571 |
12 | lnc-PSG9-2 | chr19:43715943-43716627 | NONHSAT066591 |
13 | lnc-PSG6-3 | chr19:43370618-43371302 | NONHSAT066572 |
14 | lnc-PSG2-1 | chr19:43585939-43586423 | NONHSAT066581 |
15 | lnc-PSG9-2 | chr19:43737376-43737446 | NONHSAT066591 |
16 | lnc-PSG9-2 | chr19:43719405-43719531 | NONHSAT066591 |
17 | lnc-PSG5-1 | chr19:43696890-43697540 | NONHSAT066588 |
18 | lnc-PSG9-2 | chr19:43724140-43724394 | NONHSAT066591 |
19 | lnc-PSG6-3 | chr19:43372908-43374797 | NONHSAT066572 |
20 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT146988 |
21 | lnc-PSG9-2 | chr19:43727043-43727110 | NONHSAT066591 |
22 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT146988 |
23 | lnc-AC011497.1-2 | chr19:43155239-43156171 | ENSG00000213904.4 |
24 | lnc-PSG4-3 | chr19:43674207-43674723 | NONHSAT066585 |
25 | lnc-PSG6-1 | chr19:43430590-43430868 | NR_073194 |
26 | lnc-CD177-1 | chr19:43665002-43665014 | ENSG00000227606.1 |
27 | lnc-PSG6-1 | chr19:43429925-43430179 | NR_073194 |
28 | lnc-PSG5-1 | chr19:43698492-43699038 | NONHSAT066588 |
29 | lnc-PSG4-1 | chr19:43710321-43711451 | NONHSAT066590 |
30 | lnc-PSG5-1 | chr19:43698107-43698746 | NONHSAT066589 |
31 | lnc-CD177-1 | chr19:43657431-43657763 | ENSG00000227606.1 |
32 | lnc-AC011497.1-2 | chr19:43155388-43155602 | NONHSAT066564 |
33 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT066571 |
34 | lnc-PSG6-2 | chr19:43453655-43453909 | NONHSAT066575 |
35 | lnc-CD177-1 | chr19:43658863-43659311 | ENSG00000227606.1 |
36 | lnc-PSG9-2 | chr19:43734076-43734177 | NONHSAT066591 |
37 | lnc-PSG6-1 | chr19:43439556-43439921 | NR_073194 |
38 | lnc-PSG6-3 | chr19:43372253-43372507 | NONHSAT066572 |
39 | lnc-PSG6-1 | chr19:43433594-43433872 | NR_073194 |
40 | lnc-PSG4-1 | chr19:43707241-43708403 | NONHSAT066590 |
41 | lnc-PSG8-1 | chr19:43289879-43290117 | NONHSAT066567 |
42 | lnc-PSG8-1 | chr19:43285358-43285449 | NONHSAT066567 |
43 | lnc-PSG2-5 | chr19:43514422-43514579 | NONHSAT066577 |
44 | lnc-PSG4-3 | chr19:43671924-43672287 | NONHSAT066585 |
45 | lnc-PSG4-3 | chr19:43674207-43674717 | NONHSAT066586 |
46 | lnc-PSG1-1 | chr19:43343520-43343530 | NONHSAT146988 |
47 | lnc-PSG11-1 | chr19:43540021-43540112 | NONHSAT066579 |
48 | lnc-PSG6-2 | chr19:43454299-43454539 | NONHSAT066575 |
49 | lnc-PSG2-5 | chr19:43511982-43512194 | NONHSAT066576 |
50 | lnc-PSG4-2 | chr19:43688934-43689087 | NONHSAT066587 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CEACAMP7 | TF binding region |
PSG4 | TF binding region |
CEACAMP1 | TF binding region |
CEACAMP9 | TF binding region |
PSG8 | TF binding region |
CEACAMP8 | TF binding region |
PSG1 | TF binding region |
PSG2 | TF binding region |
ENSG00000227606 | TF binding region |
RPS10P28 | TF binding region |
PSG5 | TF binding region |
PSG7 | TF binding region |
PSG11 | TF binding region |
ENSG00000225877 | TF binding region |
CEACAMP5 | TF binding region |
PSG6 | TF binding region |
CEACAMP10 | TF binding region |
CEACAMP6 | TF binding region |
PSG3 | TF binding region |
PSG10P | TF binding region |
CEACAMP7 | CpG island |
PSG4 | CpG island |
CEACAMP1 | CpG island |
CEACAMP9 | CpG island |
PSG8 | CpG island |
CEACAMP8 | CpG island |
PSG1 | CpG island |
PSG2 | CpG island |
ENSG00000227606 | CpG island |
RPS10P28 | CpG island |
PSG5 | CpG island |
PSG7 | CpG island |
PSG11 | CpG island |
ENSG00000225877 | CpG island |
CEACAMP5 | CpG island |
PSG6 | CpG island |
CEACAMP10 | CpG island |
CEACAMP6 | CpG island |
PSG3 | CpG island |
PSG10P | CpG island |
ENSG00000170848 | chromatin interactions |
ENSG00000231561 | chromatin interactions |
ENSG00000243137 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs138111763 | chr19:43149434-43149435 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs386809437 | chr19:43149435-43149436 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs78857130 | chr19:43149436-43149437 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs545088133 | chr19:43149437-43149438 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs375538841 | chr19:43149462-43149463 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs372189545 | chr19:43149494-43149495 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs575299822 | chr19:43149593-43149594 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs370622175 | chr19:43149604-43149605 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs116359333 | chr19:43149613-43149614 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs551222560 | chr19:43149616-43149617 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs565080588 | chr19:43149621-43149622 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs527528823 | chr19:43149726-43149727 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs542690231 | chr19:43149761-43149762 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs143719983 | chr19:43149775-43149776 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs536621440 | chr19:43149843-43149844 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs186338383 | chr19:43149859-43149860 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs550127690 | chr19:43149878-43149879 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs569984360 | chr19:43149923-43149924 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs114970392 | chr19:43149944-43149945 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs558833799 | chr19:43149986-43149987 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs572555599 | chr19:43150006-43150007 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs566248622 | chr19:43150056-43150057 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs8108816 | chr19:43150071-43150072 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs548336772 | chr19:43150078-43150079 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs554805642 | chr19:43150127-43150128 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs574812623 | chr19:43150132-43150133 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
27 | rs74413120 | chr19:43150155-43150156 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs56978333 | chr19:43150164-43150165 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
29 | rs191598398 | chr19:43150209-43150210 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs118025601 | chr19:43150214-43150215 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs183500580 | chr19:43150251-43150252 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs201624433 | chr19:43150362-43150363 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs8109269 | chr19:43150440-43150441 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs188141870 | chr19:43150444-43150445 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs573270375 | chr19:43150448-43150449 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
36 | rs561094883 | chr19:43150493-43150494 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs377451256 | chr19:43150526-43150527 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs557514043 | chr19:43150572-43150573 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs570896245 | chr19:43150581-43150582 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs532461111 | chr19:43150737-43150738 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs530000582 | chr19:43150764-43150765 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs145972780 | chr19:43150807-43150808 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs191410901 | chr19:43150835-43150836 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs532406958 | chr19:43150883-43150884 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs182695459 | chr19:43150899-43150900 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs544902549 | chr19:43150904-43150905 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs375383379 | chr19:43151019-43151020 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs368922404 | chr19:43151113-43151114 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs551046264 | chr19:43151115-43151116 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs138777675 | chr19:43151132-43151133 | Weak transcription | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21364760 | CNVD |
Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Gastric cancer | 18160780 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Astrocytoma | 22246337 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Ependymoma | 20639864 | CNVD |
Autism | 19492091 | CNVD |
Ovarian cancer | 20800559 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 16272173 | CNVD |
Spondylocostal dysostosis | 21085971 | CNVD |
Nicotine metabolism | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Melanoma | 20877625 | CNVD |
Ovarian cancer | 21240255 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Primary Severe Spermatogenic Failure | 20378930 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:43150400-43150600 | ZNF genes & repeats | Brain Hippocampus Middle | brain |
2 | chr19:43150600-43159800 | Weak transcription | Brain Hippocampus Middle | brain |
3 | chr19:43153200-43158000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
4 | chr19:43154000-43154200 | Bivalent Enhancer | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
5 | chr19:43154400-43156000 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
6 | chr19:43154800-43159800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
7 | chr19:43155200-43155400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
8 | chr19:43155400-43156000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
9 | chr19:43155400-43157600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
10 | chr19:43155800-43157800 | Weak transcription | Adipose Nuclei | Adipose |
11 | chr19:43156000-43156600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
12 | chr19:43156000-43156600 | Strong transcription | Brain Dorsolateral Prefrontal Cortex | brain |
13 | chr19:43156000-43162000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
14 | chr19:43156400-43156800 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
15 | chr19:43156600-43159800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
16 | chr19:43156800-43157800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
17 | chr19:43157200-43158000 | Enhancers | Esophagus | oesophagus |
18 | chr19:43157400-43157800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
19 | chr19:43157400-43158600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
20 | chr19:43157600-43160000 | Weak transcription | Brain Angular Gyrus | brain |
21 | chr19:43157600-43160200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
22 | chr19:43157800-43158000 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
23 | chr19:43157800-43158000 | Enhancers | Pancreas | Pancrea |
24 | chr19:43157800-43158600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
25 | chr19:43157800-43163000 | Enhancers | Adipose Nuclei | Adipose |
26 | chr19:43158000-43158600 | Flanking Active TSS | Foreskin Melanocyte Primary Cells skin01 | Skin |
27 | chr19:43158200-43159800 | Weak transcription | Pancreas | Pancrea |
28 | chr19:43158600-43162400 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
29 | chr19:43159200-43163000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
30 | chr19:43159400-43162000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
31 | chr19:43159600-43159800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
32 | chr19:43159800-43160000 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
33 | chr19:43159800-43160600 | Enhancers | Pancreas | Pancrea |
34 | chr19:43159800-43161800 | Enhancers | Brain Inferior Temporal Lobe | brain |
35 | chr19:43159800-43161800 | Enhancers | Brain Substantia Nigra | brain |
36 | chr19:43159800-43162000 | Enhancers | Brain Hippocampus Middle | brain |
37 | chr19:43160000-43160400 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
38 | chr19:43160000-43160600 | Enhancers | Gastric | stomach |
39 | chr19:43160000-43161400 | Enhancers | Brain Anterior Caudate | brain |
40 | chr19:43160000-43161600 | Enhancers | Brain Cingulate Gyrus | brain |
41 | chr19:43160000-43162000 | Enhancers | Brain Angular Gyrus | brain |
42 | chr19:43160200-43161800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
43 | chr19:43160200-43174800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
44 | chr19:43160400-43161200 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
45 | chr19:43160800-43161000 | Enhancers | Left Ventricle | heart |
46 | chr19:43161000-43161400 | Enhancers | Colon Smooth Muscle | Colon |
47 | chr19:43161400-43161800 | Weak transcription | Colon Smooth Muscle | Colon |
48 | chr19:43161400-43163000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
49 | chr19:43161800-43162600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
50 | chr19:43161800-43162600 | Enhancers | Colon Smooth Muscle | Colon |