Variant report
Variant | nsv544010 |
---|---|
Chromosome Location | chr19:43173814-43584478 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5160)
- CpG islands (count:2932)
- Chromatin interactive region (count:17)
- LncRNA region (count:46)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr19:43208643-43208644 | K562 | blood: | n/a | n/a |
2 | ATF3 | chr19:43335307-43336092 | A549 | lung: | n/a | n/a |
3 | ATF3 | chr19:43355048-43355947 | A549 | lung: | n/a | n/a |
4 | ATF3 | chr19:43336349-43336838 | A549 | lung: | n/a | n/a |
5 | ATF3 | chr19:43355412-43355889 | A549 | lung: | n/a | n/a |
6 | ATF3 | chr19:43335349-43336094 | A549 | lung: | n/a | n/a |
7 | ATF3 | chr19:43336336-43336928 | A549 | lung: | n/a | n/a |
8 | BATF | chr19:43246213-43246502 | GM12878 | blood: | n/a | n/a |
9 | BATF | chr19:43179178-43179402 | GM12878 | blood: | n/a | n/a |
10 | BATF | chr19:43302238-43302533 | GM12878 | blood: | n/a | chr19:43302344-43302355 |
11 | BATF | chr19:43552261-43552460 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
12 | BATF | chr19:43552186-43552537 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
13 | BATF | chr19:43361555-43361754 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr19:43442962-43443231 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr19:43271446-43271728 | GM12878 | blood: | n/a | n/a |
16 | BCL11A | chr19:43179101-43179287 | GM12878 | blood: | n/a | n/a |
17 | BCL3 | chr19:43335242-43336126 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
18 | BCL3 | chr19:43336972-43337663 | A549 | lung: | n/a | n/a |
19 | BCL3 | chr19:43402518-43403428 | A549 | lung: | n/a | n/a |
20 | BCL3 | chr19:43354910-43356058 | A549 | lung: | n/a | n/a |
21 | BCL3 | chr19:43336292-43336877 | A549 | lung: | n/a | n/a |
22 | BCL3 | chr19:43336159-43337656 | A549 | lung: | n/a | chr19:43336227-43336234 |
23 | BCL3 | chr19:43354946-43356043 | A549 | lung: | n/a | n/a |
24 | BCL3 | chr19:43335292-43335990 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
25 | BCL3 | chr19:43323095-43323355 | GM12878 | blood: | n/a | n/a |
26 | BCL3 | chr19:43297507-43298116 | A549 | lung: | n/a | n/a |
27 | BHLHE40 | chr19:43385480-43385517 | K562 | blood: | n/a | n/a |
28 | BHLHE40 | chr19:43427453-43427512 | GM12878 | blood: | n/a | n/a |
29 | BHLHE40 | chr19:43355572-43355890 | A549 | lung: | n/a | n/a |
30 | BHLHE40 | chr19:43582147-43582203 | K562 | blood: | n/a | n/a |
31 | BRCA1 | chr19:43436723-43436914 | Hela-S3 | cervix: | n/a | n/a |
32 | BRCA1 | chr19:43297623-43297950 | Hela-S3 | cervix: | n/a | n/a |
33 | BRCA1 | chr19:43355288-43355847 | Hela-S3 | cervix: | n/a | n/a |
34 | BRCA1 | chr19:43525934-43526309 | Hela-S3 | cervix: | n/a | n/a |
35 | BRCA1 | chr19:43265411-43265577 | Hela-S3 | cervix: | n/a | n/a |
36 | CBX3 | chr19:43190821-43191075 | K562 | blood: | n/a | n/a |
37 | CBX3 | chr19:43190865-43191064 | K562 | blood: | n/a | n/a |
38 | CBX3 | chr19:43385431-43385838 | K562 | blood: | n/a | n/a |
39 | CBX3 | chr19:43385505-43385738 | K562 | blood: | n/a | n/a |
40 | CBX3 | chr19:43188032-43188426 | HCT-116 | colon: | n/a | n/a |
41 | CEBPB | chr19:43562867-43563067 | Hela-S3 | cervix: | n/a | n/a |
42 | CEBPB | chr19:43345870-43346046 | IMR90 | lung: | n/a | n/a |
43 | CEBPB | chr19:43328208-43328426 | Hela-S3 | cervix: | n/a | chr19:43328257-43328268 |
44 | CEBPB | chr19:43336488-43336863 | Hela-S3 | cervix: | n/a | n/a |
45 | CEBPB | chr19:43496486-43496642 | K562 | blood: | n/a | n/a |
46 | CEBPB | chr19:43562943-43563108 | MCF-7 | breast: | n/a | n/a |
47 | CEBPB | chr19:43337158-43337425 | Hela-S3 | cervix: | n/a | n/a |
48 | CEBPB | chr19:43496316-43496617 | A549 | lung: | n/a | n/a |
49 | CEBPB | chr19:43516550-43516678 | K562 | blood: | n/a | n/a |
50 | CEBPB | chr19:43355051-43355897 | A549 | lung: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43423119-43423169 | Hepatocyte | liver: | n/a |
2 | chr19:43423176-43423226 | ProgFib | skin: | n/a |
3 | chr19:43410455-43410505 | GM12891 | blood: | n/a |
4 | chr19:43384780-43384830 | HEK293 | kidney: | embryo |
5 | chr19:43423119-43423169 | Hepatocyte | liver: | n/a |
6 | chr19:43423176-43423226 | ProgFib | skin: | n/a |
7 | chr19:43410455-43410505 | GM12891 | blood: | n/a |
8 | chr19:43384780-43384830 | HEK293 | kidney: | embryo |
9 | chr19:43245860-43245910 | LNCaP | prostate: | n/a |
10 | chr19:43442804-43442854 | GM12891 | blood: | n/a |
11 | chr19:43244635-43244685 | HEK293 | kidney: | embryo |
12 | chr19:43421584-43421634 | HCT-116 | colon: | n/a |
13 | chr19:43441294-43441344 | MCF10A-Er-Src | breast: | n/a |
14 | chr19:43530536-43530586 | HL-60 | blood: | n/a |
15 | chr19:43257346-43257396 | SAEC | small airway: | n/a |
16 | chr19:43202122-43202172 | HMEC | breast: | n/a |
17 | chr19:43265778-43265828 | HUVEC | blood vessel: | n/a |
18 | chr19:43528994-43529044 | ProgFib | skin: | n/a |
19 | chr19:43442804-43442854 | HCPEpiC | choroid plexus: | n/a |
20 | chr19:43423119-43423169 | SK-N-SH_RA | brain: | n/a |
21 | chr19:43202312-43202362 | PANC-1 | pancreas: | n/a |
22 | chr19:43423119-43423169 | NH-A | brain: | n/a |
23 | chr19:43530623-43530673 | BE2_C | brain: | n/a |
24 | chr19:43361218-43361268 | GM12878 | blood: | n/a |
25 | chr19:43385047-43385097 | RPTEC | kidney: | n/a |
26 | chr19:43531821-43531871 | AG04449 | skin: | fetal |
27 | chr19:43531821-43531871 | T-47D | breast: | n/a |
28 | chr19:43202312-43202362 | NHBE | bronchial: | n/a |
29 | chr19:43244680-43244730 | AG04450 | lung: | fetal |
30 | chr19:43383799-43383849 | GM12892 | blood: | n/a |
31 | chr19:43385047-43385097 | ProgFib | skin: | n/a |
32 | chr19:43530623-43530673 | LNCaP | prostate: | n/a |
33 | chr19:43244635-43244685 | AG04449 | skin: | fetal |
34 | chr19:43383405-43383455 | AG09309 | skin: | n/a |
35 | chr19:43202312-43202362 | HUVEC | blood vessel: | n/a |
36 | chr19:43383799-43383849 | HIPEpiC | eye: | n/a |
37 | chr19:43410455-43410505 | PFSK-1 | brain: | n/a |
38 | chr19:43385100-43385150 | AG04450 | lung: | fetal |
39 | chr19:43421584-43421634 | Hepatocyte | liver: | n/a |
40 | chr19:43198154-43198204 | A549 | lung: | n/a |
41 | chr19:43360229-43360279 | GM12891 | blood: | n/a |
42 | chr19:43383986-43384036 | RPTEC | kidney: | n/a |
43 | chr19:43383799-43383849 | BJ | skin: | n/a |
44 | chr19:43271112-43271162 | SK-N-MC | brain: | n/a |
45 | chr19:43245921-43245971 | HepG2 | liver: | n/a |
46 | chr19:43361218-43361268 | GM06990 | blood: | n/a |
47 | chr19:43355659-43355709 | H1-hESC | embryonic stem cell: | embryo |
48 | chr19:43271004-43271054 | GM12891 | blood: | n/a |
49 | chr19:43269877-43269927 | A549 | lung: | n/a |
50 | chr19:43580600-43580650 | AG04449 | skin: | fetal |
(count:17 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43110594..43111450-chr19:43197610..43198160,2 | MCF-7 | breast: | |
2 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
3 | chr19:43531581..43532101-chr2:1136088..1136613,2 | MCF-7 | breast: | |
4 | chr19:43265768..43266290-chr19:43769932..43770473,2 | MCF-7 | breast: | |
5 | chr19:43197619..43198590-chr19:43246174..43246898,3 | MCF-7 | breast: | |
6 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
7 | chr19:43197626..43198528-chr19:43245881..43246809,2 | MCF-7 | breast: | |
8 | chr19:43196586..43198250-chr19:43213574..43216161,2 | MCF-7 | breast: | |
9 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
10 | chr19:43197619..43198590-chr19:43246174..43246898,3 | MCF-7 | breast: | |
11 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
12 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
13 | chr19:43196586..43198250-chr19:43213574..43216161,2 | MCF-7 | breast: | |
14 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
15 | chr19:43197626..43198528-chr19:43245881..43246809,2 | MCF-7 | breast: | |
16 | chr19:43297087..43297875-chr19:43423005..43423976,2 | MCF-7 | breast: | |
17 | chr19:43139154..43139986-chr19:43246322..43246897,2 | MCF-7 | breast: |
(count:46 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT066571 |
2 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT066571 |
3 | lnc-PSG6-3 | chr19:43372908-43374797 | NONHSAT066572 |
4 | lnc-PSG8-1 | chr19:43285358-43285449 | NONHSAT066567 |
5 | lnc-PSG6-1 | chr19:43439556-43439921 | NR_073194 |
6 | lnc-PSG6-3 | chr19:43370618-43371302 | NONHSAT066572 |
7 | lnc-PSG6-3 | chr19:43372253-43372507 | NONHSAT066572 |
8 | lnc-PSG8-1 | chr19:43289879-43290117 | NONHSAT066567 |
9 | lnc-PSG6-2 | chr19:43453655-43453909 | NONHSAT066575 |
10 | lnc-PSG6-1 | chr19:43429925-43431729 | NONHSAT066573 |
11 | lnc-PSG1-1 | chr19:43343708-43343916 | NONHSAT066571 |
12 | lnc-PSG2-4 | chr19:43521383-43521753 | NONHSAT066578 |
13 | lnc-PSG1-1 | chr19:43343520-43343530 | NONHSAT146988 |
14 | lnc-PSG1-1 | chr19:43343708-43343916 | NONHSAT146988 |
15 | lnc-PSG6-1 | chr19:43441165-43441330 | NONHSAT066574 |
16 | lnc-PSG1-1 | chr19:43570669-43570753 | NONHSAT066570 |
17 | lnc-PSG2-2 | chr19:43575923-43576106 | NONHSAT066580 |
18 | lnc-PSG2-5 | chr19:43514422-43514579 | NONHSAT066577 |
19 | lnc-PSG3-1 | chr19:43258485-43260276 | NONHSAT066566 |
20 | lnc-PSG2-2 | chr19:43576503-43576781 | NONHSAT066580 |
21 | lnc-PSG3-1 | chr19:43256843-43257528 | NONHSAT066566 |
22 | lnc-PSG11-1 | chr19:43540021-43540112 | NONHSAT066579 |
23 | lnc-PSG6-1 | chr19:43441165-43441330 | NR_073194 |
24 | lnc-PSG6-1 | chr19:43429925-43430179 | NR_073194 |
25 | lnc-PSG2-5 | chr19:43519268-43519426 | NONHSAT066577 |
26 | lnc-PSG8-1 | chr19:43290505-43290747 | NONHSAT066567 |
27 | lnc-PSG2-4 | chr19:43522922-43523199 | NONHSAT066578 |
28 | lnc-PSG6-1 | chr19:43428284-43428976 | NR_073194 |
29 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT146988 |
30 | lnc-PSG11-1 | chr19:43545168-43545400 | NONHSAT066579 |
31 | lnc-PSG1-1 | chr19:43343447-43343530 | NONHSAT066571 |
32 | lnc-PSG6-1 | chr19:43440309-43440647 | NONHSAT066574 |
33 | lnc-PSG1-1 | chr19:43341149-43341534 | NONHSAT066571 |
34 | lnc-PSG6-2 | chr19:43454299-43454539 | NONHSAT066575 |
35 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT146988 |
36 | lnc-PSG6-1 | chr19:43433594-43433872 | NR_073194 |
37 | lnc-PSG1-1 | chr19:43341149-43341602 | NONHSAT066570 |
38 | lnc-PSG6-1 | chr19:43430590-43430868 | NR_073194 |
39 | lnc-PSG2-5 | chr19:43514110-43514858 | NONHSAT066576 |
40 | lnc-PSG2-5 | chr19:43511982-43512194 | NONHSAT066576 |
41 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT146988 |
42 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT146988 |
43 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT066571 |
44 | lnc-PSG11-1 | chr19:43544526-43544780 | NONHSAT066579 |
45 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT066571 |
46 | lnc-PSG6-1 | chr19:43428286-43428976 | NONHSAT066573 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CEACAMP7 | TF binding region |
PSG8 | TF binding region |
CEACAMP8 | TF binding region |
PSG1 | TF binding region |
PSG2 | TF binding region |
RPS10P28 | TF binding region |
PSG7 | TF binding region |
PSG11 | TF binding region |
ENSG00000225877 | TF binding region |
PSG6 | TF binding region |
CEACAMP6 | TF binding region |
PSG3 | TF binding region |
PSG10P | TF binding region |
CEACAMP7 | CpG island |
PSG8 | CpG island |
CEACAMP8 | CpG island |
PSG1 | CpG island |
PSG2 | CpG island |
RPS10P28 | CpG island |
PSG7 | CpG island |
PSG11 | CpG island |
ENSG00000225877 | CpG island |
PSG6 | CpG island |
CEACAMP6 | CpG island |
PSG3 | CpG island |
PSG10P | CpG island |
ENSG00000170848 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs546365147 | chr19:43173821-43173822 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs34775251 | chr19:43173833-43173834 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs139394456 | chr19:43173836-43173837 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs149941880 | chr19:43173855-43173856 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs543242326 | chr19:43173897-43173898 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs182081171 | chr19:43173911-43173912 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs555154134 | chr19:43173974-43173975 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs570133160 | chr19:43173990-43173991 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs73562346 | chr19:43174038-43174039 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
10 | rs554166278 | chr19:43174069-43174070 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs73562347 | chr19:43174103-43174104 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs111296495 | chr19:43174147-43174148 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs75780037 | chr19:43174156-43174157 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs540642668 | chr19:43174169-43174170 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs538394658 | chr19:43174176-43174177 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs577711982 | chr19:43174178-43174179 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs552344502 | chr19:43174184-43174185 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs397859452 | chr19:43174197-43174198 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs148638719 | chr19:43174251-43174252 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs559305402 | chr19:43174288-43174289 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs113532833 | chr19:43174292-43174293 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs554456040 | chr19:43174350-43174351 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs542579078 | chr19:43174358-43174359 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs545709543 | chr19:43174362-43174363 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs186680875 | chr19:43174363-43174364 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs560104291 | chr19:43174373-43174374 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs537024197 | chr19:43174440-43174441 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs557108677 | chr19:43174478-43174479 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs577260903 | chr19:43174497-43174498 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs546029584 | chr19:43174505-43174506 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs559854930 | chr19:43174631-43174632 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs573369513 | chr19:43174720-43174721 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs542507650 | chr19:43174762-43174763 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs549985995 | chr19:43186863-43186864 | Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
35 | rs115437551 | chr19:43186887-43186888 | Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
36 | rs190796930 | chr19:43186895-43186896 | Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
37 | rs540056450 | chr19:43186912-43186913 | Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
38 | rs180721832 | chr19:43186969-43186970 | Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
39 | rs187395390 | chr19:43186970-43186971 | Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
40 | rs4141247 | chr19:43198010-43198011 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs111932096 | chr19:43198015-43198016 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs10421714 | chr19:43198035-43198036 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
43 | rs532726348 | chr19:43198044-43198045 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs535667847 | chr19:43198063-43198064 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs76758542 | chr19:43198108-43198109 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs555665363 | chr19:43198120-43198121 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs150278901 | chr19:43198126-43198127 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs544569010 | chr19:43198134-43198135 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs182182299 | chr19:43198154-43198155 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs566226059 | chr19:43198158-43198159 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21364760 | CNVD |
Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Gastric cancer | 18160780 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Astrocytoma | 22246337 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Ependymoma | 20639864 | CNVD |
Autism | 19492091 | CNVD |
Ovarian cancer | 20800559 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 16272173 | CNVD |
Spondylocostal dysostosis | 21085971 | CNVD |
Nicotine metabolism | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Melanoma | 20877625 | CNVD |
Ovarian cancer | 21240255 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Primary Severe Spermatogenic Failure | 20378930 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:43160200-43174800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
2 | chr19:43186800-43187000 | Flanking Bivalent TSS/Enh | A549 | lung |
3 | chr19:43198000-43199400 | Enhancers | Placenta | Placenta |
4 | chr19:43199400-43200600 | Weak transcription | Placenta | Placenta |
5 | chr19:43200000-43200400 | Bivalent Enhancer | A549 | lung |
6 | chr19:43200400-43201000 | Enhancers | A549 | lung |
7 | chr19:43200600-43200800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
8 | chr19:43200600-43201000 | Bivalent Enhancer | HUES6 Cell Line | embryonic stem cell |
9 | chr19:43200600-43203000 | Enhancers | Placenta | Placenta |
10 | chr19:43202200-43202400 | Bivalent Enhancer | IMR90 fetal lung fibroblasts Cell Line | lung |
11 | chr19:43203000-43204600 | Weak transcription | Placenta | Placenta |
12 | chr19:43204000-43204200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
13 | chr19:43204600-43204800 | Enhancers | Placenta | Placenta |
14 | chr19:43213600-43215000 | Enhancers | Placenta | Placenta |
15 | chr19:43214400-43214800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
16 | chr19:43215000-43215600 | Enhancers | A549 | lung |
17 | chr19:43215000-43216600 | Weak transcription | Placenta | Placenta |
18 | chr19:43216600-43217400 | Enhancers | Placenta | Placenta |
19 | chr19:43217400-43217800 | Weak transcription | Placenta | Placenta |
20 | chr19:43217800-43218000 | Enhancers | Placenta | Placenta |
21 | chr19:43218000-43227200 | Weak transcription | Placenta | Placenta |
22 | chr19:43227200-43229200 | Strong transcription | Placenta | Placenta |
23 | chr19:43229200-43233600 | Weak transcription | Placenta | Placenta |
24 | chr19:43232400-43233600 | Enhancers | Brain Hippocampus Middle | brain |
25 | chr19:43232600-43233200 | Enhancers | Brain Cingulate Gyrus | brain |
26 | chr19:43232800-43233200 | Enhancers | Brain Substantia Nigra | brain |
27 | chr19:43233200-43236800 | Weak transcription | Brain Substantia Nigra | brain |
28 | chr19:43233600-43233800 | Genic enhancers | Placenta | Placenta |
29 | chr19:43233800-43234200 | Weak transcription | Placenta | Placenta |
30 | chr19:43234200-43235000 | Genic enhancers | Placenta | Placenta |
31 | chr19:43235000-43236600 | Weak transcription | Placenta | Placenta |
32 | chr19:43236600-43237600 | Genic enhancers | Placenta | Placenta |
33 | chr19:43236800-43237200 | Active TSS | Brain Substantia Nigra | brain |
34 | chr19:43237600-43238400 | Weak transcription | Placenta | Placenta |
35 | chr19:43238400-43241600 | Active TSS | Placenta | Placenta |
36 | chr19:43239000-43240400 | Enhancers | NHDF-Ad | bronchial |
37 | chr19:43239000-43242200 | Enhancers | Osteobl | bone |
38 | chr19:43239000-43242800 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
39 | chr19:43239200-43242000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
40 | chr19:43239400-43240400 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
41 | chr19:43239400-43242000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
42 | chr19:43239400-43242200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
43 | chr19:43239400-43242400 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
44 | chr19:43239400-43242400 | Enhancers | HMEC | breast |
45 | chr19:43239400-43242800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
46 | chr19:43239800-43240400 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
47 | chr19:43239800-43242000 | Enhancers | NH-A | brain |
48 | chr19:43239800-43242600 | Enhancers | NHEK | skin |
49 | chr19:43240000-43240200 | Enhancers | Foreskin Fibroblast Primary Cells skin02 | Skin |
50 | chr19:43240000-43240200 | Enhancers | HSMM | muscle |