Variant report
Variant | nsv544054 |
---|---|
Chromosome Location | chr19:52147399-52271247 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3464)
- CpG islands (count:4033)
- Chromatin interactive region (count:116)
- LncRNA region (count:5)
- Mature miRNA region (count: 6)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr19:52164382-52164598 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr19:52168345-52168570 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr19:52207264-52207483 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr19:52160074-52160493 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr19:52204981-52205633 | K562 | blood: | n/a | n/a |
6 | ARID3A | chr19:52216127-52216237 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr19:52237226-52237413 | K562 | blood: | n/a | n/a |
8 | ATF1 | chr19:52237092-52237389 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr19:52204949-52205376 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr19:52239296-52239871 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr19:52243137-52243393 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr19:52154746-52155090 | K562 | blood: | n/a | n/a |
13 | ATF2 | chr19:52205683-52206074 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | ATF2 | chr19:52207454-52207804 | GM12878 | blood: | n/a | chr19:52207657-52207671 |
15 | ATF2 | chr19:52154376-52154835 | GM12878 | blood: | n/a | n/a |
16 | ATF3 | chr19:52207129-52207570 | A549 | lung: | n/a | chr19:52207448-52207457 chr19:52207161-52207170 chr19:52207444-52207464 chr19:52207214-52207223 |
17 | ATF3 | chr19:52193598-52194206 | A549 | lung: | n/a | chr19:52194168-52194177 |
18 | ATF3 | chr19:52191900-52192528 | A549 | lung: | n/a | n/a |
19 | ATF3 | chr19:52207096-52207734 | A549 | lung: | n/a | chr19:52207448-52207457 chr19:52207161-52207170 chr19:52207444-52207464 chr19:52207214-52207223 |
20 | ATF3 | chr19:52191947-52192445 | A549 | lung: | n/a | n/a |
21 | BACH1 | chr19:52205255-52205374 | K562 | blood: | n/a | n/a |
22 | BACH1 | chr19:52222347-52223096 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | BACH1 | chr19:52216051-52216193 | K562 | blood: | n/a | n/a |
24 | BACH1 | chr19:52207236-52207418 | K562 | blood: | n/a | n/a |
25 | BACH1 | chr19:52237319-52237585 | K562 | blood: | n/a | n/a |
26 | BACH1 | chr19:52207183-52207531 | H1-hESC | embryonic stem cell: | n/a | n/a |
27 | BATF | chr19:52149947-52150214 | GM12878 | blood: | n/a | n/a |
28 | BCL11A | chr19:52149937-52150305 | GM12878 | blood: | n/a | n/a |
29 | BCL3 | chr19:52214225-52215393 | A549 | lung: | n/a | n/a |
30 | BCL3 | chr19:52216373-52217627 | A549 | lung: | n/a | n/a |
31 | BCL3 | chr19:52226655-52227156 | GM12878 | blood: | n/a | n/a |
32 | BCL3 | chr19:52192898-52193378 | A549 | lung: | n/a | chr19:52193326-52193335 chr19:52193169-52193182 chr19:52193321-52193334 |
33 | BCL3 | chr19:52194287-52195011 | A549 | lung: | n/a | n/a |
34 | BCL3 | chr19:52212749-52214169 | A549 | lung: | n/a | n/a |
35 | BCL3 | chr19:52206715-52208030 | A549 | lung: | n/a | n/a |
36 | BCL3 | chr19:52191885-52194262 | A549 | lung: | n/a | chr19:52193326-52193335 chr19:52194168-52194181 chr19:52192591-52192604 chr19:52192366-52192379 chr19:52194169-52194178 chr19:52193878-52193887 chr19:52192370-52192383 chr19:52193169-52193182 chr19:52193321-52193334 |
37 | BCL3 | chr19:52212784-52213373 | A549 | lung: | n/a | n/a |
38 | BCL3 | chr19:52226672-52227115 | GM12878 | blood: | n/a | n/a |
39 | BCL3 | chr19:52205649-52206142 | A549 | lung: | n/a | n/a |
40 | BCL3 | chr19:52217768-52219081 | A549 | lung: | n/a | n/a |
41 | BCL3 | chr19:52226278-52226570 | GM12878 | blood: | n/a | n/a |
42 | BCL3 | chr19:52212019-52212532 | A549 | lung: | n/a | n/a |
43 | BCL3 | chr19:52193536-52194197 | A549 | lung: | n/a | chr19:52194168-52194181 chr19:52194169-52194178 chr19:52193878-52193887 |
44 | BCL3 | chr19:52190975-52191703 | A549 | lung: | n/a | n/a |
45 | BCL3 | chr19:52215627-52217718 | A549 | lung: | n/a | n/a |
46 | BCL3 | chr19:52207014-52207930 | A549 | lung: | n/a | n/a |
47 | BCL3 | chr19:52191210-52191841 | A549 | lung: | n/a | n/a |
48 | BCL3 | chr19:52218019-52218627 | A549 | lung: | n/a | n/a |
49 | BCL3 | chr19:52191859-52192877 | A549 | lung: | n/a | chr19:52192591-52192604 chr19:52192366-52192379 chr19:52192370-52192383 |
50 | BCL3 | chr19:52213388-52214137 | A549 | lung: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:52207792-52207842 | BJ | skin: | n/a |
2 | chr19:52268814-52268864 | HCF | heart: | n/a |
3 | chr19:52228400-52228450 | PANC-1 | pancreas: | n/a |
4 | chr19:52210193-52210243 | HL-60 | blood: | n/a |
5 | chr19:52206912-52206962 | GM19239 | blood: | n/a |
6 | chr19:52150230-52150280 | AG04450 | lung: | fetal |
7 | chr19:52255673-52255723 | SKMC | muscle: | n/a |
8 | chr19:52207792-52207842 | BJ | skin: | n/a |
9 | chr19:52268814-52268864 | HCF | heart: | n/a |
10 | chr19:52228400-52228450 | PANC-1 | pancreas: | n/a |
11 | chr19:52210193-52210243 | HL-60 | blood: | n/a |
12 | chr19:52206912-52206962 | GM19239 | blood: | n/a |
13 | chr19:52150230-52150280 | AG04450 | lung: | fetal |
14 | chr19:52255673-52255723 | SKMC | muscle: | n/a |
15 | chr19:52216726-52216776 | AoSMC | blood vessel: | n/a |
16 | chr19:52266482-52266532 | T-47D | breast: | n/a |
17 | chr19:52148354-52148404 | U87 | brain: | n/a |
18 | chr19:52256460-52256510 | NT2-D1 | testis: | n/a |
19 | chr19:52193933-52193983 | HUVEC | blood vessel: | n/a |
20 | chr19:52206258-52206308 | HCPEpiC | choroid plexus: | n/a |
21 | chr19:52222446-52222496 | SAEC | small airway: | n/a |
22 | chr19:52193776-52193826 | SAEC | small airway: | n/a |
23 | chr19:52217388-52217438 | HCT-116 | colon: | n/a |
24 | chr19:52254222-52254272 | BJ | skin: | n/a |
25 | chr19:52206912-52206962 | HCM | heart: | n/a |
26 | chr19:52217388-52217438 | HepG2 | liver: | n/a |
27 | chr19:52206258-52206308 | NHDF-neo | bronchial: | n/a |
28 | chr19:52256460-52256510 | CMK | blood: | n/a |
29 | chr19:52206446-52206496 | ECC-1 | luminal epithelium: | n/a |
30 | chr19:52219484-52219534 | SK-N-MC | brain: | n/a |
31 | chr19:52266482-52266532 | SK-N-SH_RA | brain: | n/a |
32 | chr19:52228038-52228088 | HPAEpiC | pulmonary alveolar: | n/a |
33 | chr19:52228048-52228098 | HRE | kidney: | n/a |
34 | chr19:52213977-52214027 | SAEC | small airway: | n/a |
35 | chr19:52210193-52210243 | GM12891 | blood: | n/a |
36 | chr19:52150230-52150280 | SAEC | small airway: | n/a |
37 | chr19:52206446-52206496 | GM19239 | blood: | n/a |
38 | chr19:52264413-52264463 | NHDF-neo | bronchial: | n/a |
39 | chr19:52253373-52253423 | AG04449 | skin: | fetal |
40 | chr19:52219484-52219534 | AG09309 | skin: | n/a |
41 | chr19:52148354-52148404 | Hepatocyte | liver: | n/a |
42 | chr19:52266642-52266692 | HMEC | breast: | n/a |
43 | chr19:52264413-52264463 | NT2-D1 | testis: | n/a |
44 | chr19:52195291-52195341 | IMR90 | lung: | fetal |
45 | chr19:52207592-52207642 | SK-N-SH | brain: | n/a |
46 | chr19:52222198-52222248 | HNPCEpiC | eye: | n/a |
47 | chr19:52223620-52223670 | HAEpiC | amniotic membrane: | n/a |
48 | chr19:52210193-52210243 | RPTEC | kidney: | n/a |
49 | chr19:52218453-52218503 | AG10803 | skin: | n/a |
50 | chr19:52268814-52268864 | HRCEpiC | kidney: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:51874861..51877749-chr19:52158879..52160406,2 | K562 | blood: | |
2 | chr19:52164333..52164883-chr19:52286275..52287235,2 | K562 | blood: | |
3 | chr19:52204536..52207246-chr19:52231773..52233515,2 | K562 | blood: | |
4 | chr19:52110880..52111497-chr19:52159833..52160812,2 | MCF-7 | breast: | |
5 | chr19:51925281..51925822-chr19:52159922..52160574,2 | MCF-7 | breast: | |
6 | chr19:52159931..52161750-chr19:52173076..52176072,2 | K562 | blood: | |
7 | chr19:52176923..52179869-chr19:52183377..52186044,2 | MCF-7 | breast: | |
8 | chr19:52173378..52174120-chr19:52182262..52182939,2 | MCF-7 | breast: | |
9 | chr19:52017645..52019212-chr19:52145235..52147486,2 | MCF-7 | breast: | |
10 | chr19:52197003..52199691-chr19:52213714..52215992,2 | MCF-7 | breast: | |
11 | chr19:52191310..52193737-chr19:54959271..54961784,2 | MCF-7 | breast: | |
12 | chr19:51979609..51981467-chr19:52190733..52192569,2 | K562 | blood: | |
13 | chr19:52198700..52202637-chr19:52203349..52207450,6 | K562 | blood: | |
14 | chr19:52173378..52174120-chr19:52182262..52182939,2 | MCF-7 | breast: | |
15 | chr12:50135431..50136207-chr19:52207060..52207844,2 | Hela-S3 | cervix: | |
16 | chr19:52213445..52215561-chr19:52311102..52312961,2 | MCF-7 | breast: | |
17 | chr19:52143293..52145764-chr19:52146395..52148250,2 | K562 | blood: | |
18 | chr19:52176167..52177672-chr19:52190052..52191714,2 | MCF-7 | breast: | |
19 | chr1:207864559..207865301-chr19:52230447..52231080,2 | MCF-7 | breast: | |
20 | chr19:52239428..52239928-chr2:10262235..10262765,2 | NB4 | blood: | |
21 | chr19:52214081..52217958-chr19:52222891..52225862,3 | K562 | blood: | |
22 | chr19:51975672..51976584-chr19:52164011..52164572,3 | MCF-7 | breast: | |
23 | chr19:52140352..52141294-chr19:52160036..52160673,2 | K562 | blood: | |
24 | chr19:52196159..52199511-chr19:52202868..52206043,4 | K562 | blood: | |
25 | chr19:52200661..52202641-chr19:52206213..52209050,2 | K562 | blood: | |
26 | chr19:52205873..52210007-chr19:52211189..52216257,9 | K562 | blood: | |
27 | chr19:52246760..52248265-chr19:52275668..52277593,2 | K562 | blood: | |
28 | chr19:52163388..52165647-chr19:52189785..52191588,2 | MCF-7 | breast: | |
29 | chr19:52014761..52015333-chr19:52159948..52160615,2 | MCF-7 | breast: | |
30 | chr19:52218179..52219711-chr19:52309357..52312195,2 | MCF-7 | breast: | |
31 | chr19:52239198..52241673-chr19:52241897..52244050,2 | MCF-7 | breast: | |
32 | chr19:52213601..52216157-chr19:52216893..52219769,2 | MCF-7 | breast: | |
33 | chr19:52246232..52248265-chr19:52275684..52277593,2 | K562 | blood: | |
34 | chr19:52264566..52267681-chr19:52268997..52272339,3 | K562 | blood: | |
35 | chr19:52186234..52189243-chr19:52190984..52192960,3 | K562 | blood: | |
36 | chr19:52213474..52218033-chr19:52227253..52233222,6 | K562 | blood: | |
37 | chr19:52215661..52216484-chr19:52286408..52287282,3 | MCF-7 | breast: | |
38 | chr19:52165001..52167520-chr19:52168782..52171133,2 | K562 | blood: | |
39 | chr19:52205132..52207221-chr19:52208927..52210926,2 | K562 | blood: | |
40 | chr19:52210301..52211912-chr19:52215119..52217997,2 | K562 | blood: | |
41 | chr19:52216500..52217173-chr19:52286806..52287310,2 | MCF-7 | breast: | |
42 | chr19:52219107..52222029-chr19:52222398..52224089,2 | K562 | blood: | |
43 | chr19:52191235..52193231-chr19:52302966..52304607,2 | MCF-7 | breast: | |
44 | chr19:52191774..52192450-chr3:55003928..55004428,2 | HCT-116 | colon: | |
45 | chr19:51869555..51871818-chr19:52192464..52195337,3 | MCF-7 | breast: | |
46 | chr19:51868121..51870952-chr19:52184825..52187480,2 | MCF-7 | breast: | |
47 | chr19:52191800..52194773-chr19:52195976..52198030,3 | K562 | blood: | |
48 | chr19:52163388..52165647-chr19:52189785..52191588,2 | MCF-7 | breast: | |
49 | chr19:52187385..52189056-chr2:236481480..236484200,2 | MCF-7 | breast: | |
50 | chr19:52160319..52160911-chr19:52311474..52312517,3 | K562 | blood: |
(count:5 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-HAS1-1 | chr19:52190491-52192335 | NONHSAT067461 |
2 | lnc-FPR2-1 | chr19:52204911-52205023 | ENSG00000182310.8 |
3 | lnc-FPR2-1 | chr19:52197463-52197808 | ENSG00000182310.8 |
4 | lnc-ZNF175-5 | chr19:52152115-52152863 | NONHSAT067458 |
5 | lnc-SIGLEC14-1 | chr19:52148730-52148798 | ENSG00000258669.1 |
miRNA name | Chromosome Location | mirBase accession |
---|---|---|
hsa-miR-99b-3p | chr19:52195909-52195930 | MIMAT0004678 |
hsa-miR-125a-5p | chr19:52196521-52196544 | MIMAT0000443 |
hsa-let-7e-5p | chr19:52196046-52196067 | MIMAT0000066 |
hsa-miR-125a-3p | chr19:52196559-52196580 | MIMAT0004602 |
hsa-miR-99b-5p | chr19:52195871-52195892 | MIMAT0000689 |
hsa-let-7e-3p | chr19:52196091-52196112 | MIMAT0004485 |
No data |
Variant related genes | Relation type |
---|---|
HAS1 | TF binding region |
SIGLEC14 | TF binding region |
ENSG00000238486 | TF binding region |
MIR99B | TF binding region |
FPR1 | TF binding region |
SPACA6P-AS | TF binding region |
MIR125A | TF binding region |
FPR2 | TF binding region |
MIRLET7E | TF binding region |
SPACA6P | TF binding region |
ENSG00000268500 | TF binding region |
RPL7P51 | TF binding region |
SIGLEC5 | TF binding region |
ENSG00000273318 | TF binding region |
HAS1 | CpG island |
SIGLEC14 | CpG island |
ENSG00000238486 | CpG island |
MIR99B | CpG island |
FPR1 | CpG island |
SPACA6P-AS | CpG island |
MIR125A | CpG island |
FPR2 | CpG island |
MIRLET7E | CpG island |
SPACA6P | CpG island |
ENSG00000268500 | CpG island |
RPL7P51 | CpG island |
SIGLEC5 | CpG island |
ENSG00000273318 | CpG island |
ENSG00000269959 | chromatin interactions |
ENSG00000160318 | chromatin interactions |
ENSG00000208008 | chromatin interactions |
ENSG00000105374 | chromatin interactions |
ENSG00000171049 | chromatin interactions |
ENSG00000198972 | chromatin interactions |
ENSG00000226696 | chromatin interactions |
ENSG00000171848 | chromatin interactions |
ENSG00000213822 | chromatin interactions |
ENSG00000167615 | chromatin interactions |
ENSG00000268520 | chromatin interactions |
ENSG00000207550 | chromatin interactions |
ENSG00000269403 | chromatin interactions |
ENSG00000182310 | chromatin interactions |
ENSG00000238486 | chromatin interactions |
ENSG00000105379 | chromatin interactions |
ENSG00000273318 | chromatin interactions |
ENSG00000141232 | chromatin interactions |
ENSG00000139644 | chromatin interactions |
ENSG00000105509 | chromatin interactions |
ENSG00000229980 | chromatin interactions |
STAT2 | Mature miRNA region |
VEGFA | Mature miRNA region |
CDKAL1 | Mature miRNA region |
NCKAP5L | Mature miRNA region |
SCD | Mature miRNA region |
SPCS3 | Mature miRNA region |
HOXC4 | Mature miRNA region |
MAPK8 | Mature miRNA region |
TANC2 | Mature miRNA region |
ATXN7L3 | Mature miRNA region |
SEMA4B | Mature miRNA region |
SPRTN | Mature miRNA region |
TP53 | Mature miRNA region |
DIP2A | Mature miRNA region |
RNMT | Mature miRNA region |
SRSF2 | Mature miRNA region |
MS4A10 | Mature miRNA region |
SLFN11 | Mature miRNA region |
PUM2 | Mature miRNA region |
NIN | Mature miRNA region |
CDH18 | Mature miRNA region |
TOR1AIP2 | Mature miRNA region |
RACGAP1 | Mature miRNA region |
SSB | Mature miRNA region |
ETV6 | Mature miRNA region |
CCDC106 | Mature miRNA region |
OGT | Mature miRNA region |
CCRN4L | Mature miRNA region |
SLC38A2 | Mature miRNA region |
BSDC1 | Mature miRNA region |
HIPK1 | Mature miRNA region |
UGGT1 | Mature miRNA region |
IRGQ | Mature miRNA region |
MAP2K7 | Mature miRNA region |
CASC4 | Mature miRNA region |
FERMT1 | Mature miRNA region |
EIF4EBP2 | Mature miRNA region |
TOR4A | Mature miRNA region |
FDPS | Mature miRNA region |
SCMH1 | Mature miRNA region |
COX16 | Mature miRNA region |
OTUB2 | Mature miRNA region |
HIF1AN | Mature miRNA region |
PIP4K2B | Mature miRNA region |
IGF2BP2 | Mature miRNA region |
MACF1 | Mature miRNA region |
DYRK2 | Mature miRNA region |
EDC3 | Mature miRNA region |
PC | Mature miRNA region |
MRPL50 | Mature miRNA region |
VAMP2 | Mature miRNA region |
CD34 | Mature miRNA region |
ELAVL1 | Mature miRNA region |
NDEL1 | Mature miRNA region |
SPTBN1 | Mature miRNA region |
RBM4 | Mature miRNA region |
UBL7 | Mature miRNA region |
RUNX1T1 | Mature miRNA region |
OSTM1 | Mature miRNA region |
EEF2 | Mature miRNA region |
LRRC8A | Mature miRNA region |
MYO9B | Mature miRNA region |
C11orf91 | Mature miRNA region |
SLCO4A1 | Mature miRNA region |
OCLN | Mature miRNA region |
CGNL1 | Mature miRNA region |
NPDC1 | Mature miRNA region |
XPO1 | Mature miRNA region |
ZNF805 | Mature miRNA region |
JAZF1 | Mature miRNA region |
SLC1A5 | Mature miRNA region |
IGF2BP3 | Mature miRNA region |
RPS27 | Mature miRNA region |
DCBLD2 | Mature miRNA region |
FAM219B | Mature miRNA region |
YWHAE | Mature miRNA region |
DSP | Mature miRNA region |
TIMM50 | Mature miRNA region |
SEPW1 | Mature miRNA region |
PYCR1 | Mature miRNA region |
THADA | Mature miRNA region |
UNC45A | Mature miRNA region |
ZNF793 | Mature miRNA region |
ZNF284 | Mature miRNA region |
OR7D2 | Mature miRNA region |
RPLP2 | Mature miRNA region |
HS6ST2 | Mature miRNA region |
NCKIPSD | Mature miRNA region |
CREBBP | Mature miRNA region |
NOLC1 | Mature miRNA region |
DUSP3 | Mature miRNA region |
SLC12A4 | Mature miRNA region |
ZFAND5 | Mature miRNA region |
PIGN | Mature miRNA region |
RALBP1 | Mature miRNA region |
USE1 | Mature miRNA region |
YWHAQ | Mature miRNA region |
PRPF8 | Mature miRNA region |
CENPP | Mature miRNA region |
KATNAL1 | Mature miRNA region |
USP37 | Mature miRNA region |
RCOR3 | Mature miRNA region |
RMND5A | Mature miRNA region |
COIL | Mature miRNA region |
ENO1 | Mature miRNA region |
MED13L | Mature miRNA region |
GGCT | Mature miRNA region |
MT-ND6 | Mature miRNA region |
CNTNAP2 | Mature miRNA region |
ATP5G2 | Mature miRNA region |
JMJD1C | Mature miRNA region |
UBE2G2 | Mature miRNA region |
NME2 | Mature miRNA region |
PIGS | Mature miRNA region |
HNRNPUL1 | Mature miRNA region |
TTC8 | Mature miRNA region |
CELF2 | Mature miRNA region |
CCL5 | Mature miRNA region |
SERF2 | Mature miRNA region |
TUBB4B | Mature miRNA region |
MAT2A | Mature miRNA region |
KRBOX4 | Mature miRNA region |
PIGP | Mature miRNA region |
TMEM107 | Mature miRNA region |
UBAP2L | Mature miRNA region |
ELMSAN1 | Mature miRNA region |
LYPLA1 | Mature miRNA region |
EIF4A1 | Mature miRNA region |
ATXN2L | Mature miRNA region |
CA2 | Mature miRNA region |
UBE2H | Mature miRNA region |
RPS2 | Mature miRNA region |
RNF26 | Mature miRNA region |
NUDT15 | Mature miRNA region |
CNBP | Mature miRNA region |
MTFR1 | Mature miRNA region |
MTOR | Mature miRNA region |
RPRD2 | Mature miRNA region |
EIF4EBP1 | Mature miRNA region |
MYCN | Mature miRNA region |
DTNB | Mature miRNA region |
E2F7 | Mature miRNA region |
ZNF770 | Mature miRNA region |
SPATA13 | Mature miRNA region |
TRRAP | Mature miRNA region |
NCLN | Mature miRNA region |
CYP2B6 | Mature miRNA region |
MT-ATP6 | Mature miRNA region |
PAX3 | Mature miRNA region |
PPIG | Mature miRNA region |
PSD3 | Mature miRNA region |
E2F8 | Mature miRNA region |
DHX15 | Mature miRNA region |
CDC5L | Mature miRNA region |
MTCH2 | Mature miRNA region |
LUZP1 | Mature miRNA region |
DGCR8 | Mature miRNA region |
ATP6V1B2 | Mature miRNA region |
TDG | Mature miRNA region |
HK2 | Mature miRNA region |
WNK3 | Mature miRNA region |
TCF4 | Mature miRNA region |
NF1 | Mature miRNA region |
OSBPL9 | Mature miRNA region |
LMNA | Mature miRNA region |
HMGB1 | Mature miRNA region |
EIF4A3 | Mature miRNA region |
XIAP | Mature miRNA region |
TDRD7 | Mature miRNA region |
ERBB2 | Mature miRNA region |
RARA | Mature miRNA region |
CLDN12 | Mature miRNA region |
BAK1 | Mature miRNA region |
ZNF652 | Mature miRNA region |
GMPS | Mature miRNA region |
TPI1 | Mature miRNA region |
BRCA1 | Mature miRNA region |
CHD7 | Mature miRNA region |
IP6K2 | Mature miRNA region |
USMG5 | Mature miRNA region |
SCYL1 | Mature miRNA region |
MT-ND5 | Mature miRNA region |
NDUFB6 | Mature miRNA region |
SKA2 | Mature miRNA region |
RBAK | Mature miRNA region |
FAM160B1 | Mature miRNA region |
ZMYND19 | Mature miRNA region |
NNT | Mature miRNA region |
SUB1 | Mature miRNA region |
NUDT8 | Mature miRNA region |
YES1 | Mature miRNA region |
ARHGAP19 | Mature miRNA region |
GUCD1 | Mature miRNA region |
PEG10 | Mature miRNA region |
COPS6 | Mature miRNA region |
COPG1 | Mature miRNA region |
LSR | Mature miRNA region |
RAP1A | Mature miRNA region |
BTRC | Mature miRNA region |
WDFY3 | Mature miRNA region |
H2AFZ | Mature miRNA region |
PLCXD1 | Mature miRNA region |
KIAA0232 | Mature miRNA region |
WDR4 | Mature miRNA region |
PAPD4 | Mature miRNA region |
AGMAT | Mature miRNA region |
LIF | Mature miRNA region |
NDUFA3 | Mature miRNA region |
DIAPH1 | Mature miRNA region |
MSMO1 | Mature miRNA region |
TMEM97 | Mature miRNA region |
CREB5 | Mature miRNA region |
PRRC2A | Mature miRNA region |
MARCH5 | Mature miRNA region |
DDHD2 | Mature miRNA region |
ALDH1B1 | Mature miRNA region |
GTPBP8 | Mature miRNA region |
GALNT2 | Mature miRNA region |
UTP15 | Mature miRNA region |
SHANK1 | Mature miRNA region |
CA5B | Mature miRNA region |
RRP1B | Mature miRNA region |
PHKA1 | Mature miRNA region |
PFN1 | Mature miRNA region |
STAM | Mature miRNA region |
YOD1 | Mature miRNA region |
PGD | Mature miRNA region |
MTUS1 | Mature miRNA region |
CARM1 | Mature miRNA region |
NUP62 | Mature miRNA region |
SALL1 | Mature miRNA region |
SVIL | Mature miRNA region |
SGSM3 | Mature miRNA region |
NUP155 | Mature miRNA region |
PRAMEF13 | Mature miRNA region |
BMP2K | Mature miRNA region |
WDR48 | Mature miRNA region |
UBE2V2 | Mature miRNA region |
TNFAIP3 | Mature miRNA region |
QSOX1 | Mature miRNA region |
RPL35A | Mature miRNA region |
WBSCR16 | Mature miRNA region |
MATR3 | Mature miRNA region |
SUGP2 | Mature miRNA region |
PPP1R10 | Mature miRNA region |
RANBP2 | Mature miRNA region |
SPCS2 | Mature miRNA region |
ERBB3 | Mature miRNA region |
NICN1 | Mature miRNA region |
EN2 | Mature miRNA region |
KIRREL | Mature miRNA region |
DLST | Mature miRNA region |
PHF23 | Mature miRNA region |
MT-CO1 | Mature miRNA region |
CTSA | Mature miRNA region |
PLA2G4F | Mature miRNA region |
SKIV2L | Mature miRNA region |
CORO1C | Mature miRNA region |
ARID1A | Mature miRNA region |
RPS10 | Mature miRNA region |
DHFR | Mature miRNA region |
STAT3 | Mature miRNA region |
UBN2 | Mature miRNA region |
SUPT4H1 | Mature miRNA region |
COX14 | Mature miRNA region |
PDPK1 | Mature miRNA region |
KATNB1 | Mature miRNA region |
PDCD11 | Mature miRNA region |
YWHAG | Mature miRNA region |
NAA60 | Mature miRNA region |
DDX39A | Mature miRNA region |
ZDHHC9 | Mature miRNA region |
TRPS1 | Mature miRNA region |
RRAGC | Mature miRNA region |
RPN2 | Mature miRNA region |
TTLL12 | Mature miRNA region |
C12orf49 | Mature miRNA region |
PAM | Mature miRNA region |
DYRK1A | Mature miRNA region |
SP1 | Mature miRNA region |
SUZ12 | Mature miRNA region |
GTF2I | Mature miRNA region |
STARD7 | Mature miRNA region |
CCDC113 | Mature miRNA region |
PPP2R5E | Mature miRNA region |
PARD6B | Mature miRNA region |
VARS | Mature miRNA region |
SERBP1 | Mature miRNA region |
CLDN4 | Mature miRNA region |
GPM6B | Mature miRNA region |
COPS8 | Mature miRNA region |
RBM17 | Mature miRNA region |
HOXA3 | Mature miRNA region |
OTUD5 | Mature miRNA region |
GPS1 | Mature miRNA region |
MFN2 | Mature miRNA region |
LMLN | Mature miRNA region |
PET112 | Mature miRNA region |
PFAS | Mature miRNA region |
TPM4 | Mature miRNA region |
ARPC5 | Mature miRNA region |
LIN28A | Mature miRNA region |
NOP16 | Mature miRNA region |
MCM3 | Mature miRNA region |
PLS3 | Mature miRNA region |
SYK | Mature miRNA region |
PSME4 | Mature miRNA region |
PPP5C | Mature miRNA region |
EMID1 | Mature miRNA region |
RPSA | Mature miRNA region |
ENSA | Mature miRNA region |
DAAM1 | Mature miRNA region |
MT-ND2 | Mature miRNA region |
SMC1A | Mature miRNA region |
ALMS1 | Mature miRNA region |
CDKN1A | Mature miRNA region |
VPS13D | Mature miRNA region |
EDF1 | Mature miRNA region |
ZFAND1 | Mature miRNA region |
NTRK3 | Mature miRNA region |
TNFAIP1 | Mature miRNA region |
RPL27A | Mature miRNA region |
ZBTB10 | Mature miRNA region |
KLF13 | Mature miRNA region |
HMGA2 | Mature miRNA region |
KIF6 | Mature miRNA region |
SEC23IP | Mature miRNA region |
KIAA0355 | Mature miRNA region |
PRC1 | Mature miRNA region |
RPL9 | Mature miRNA region |
LAMB1 | Mature miRNA region |
CAMSAP3 | Mature miRNA region |
MORC2 | Mature miRNA region |
SLC2A11 | Mature miRNA region |
IP6K1 | Mature miRNA region |
SMAP2 | Mature miRNA region |
SQLE | Mature miRNA region |
ZNF236 | Mature miRNA region |
RDX | Mature miRNA region |
CLCN7 | Mature miRNA region |
LEPRE1 | Mature miRNA region |
TFRC | Mature miRNA region |
TTC30B | Mature miRNA region |
FBXO10 | Mature miRNA region |
ACTR1B | Mature miRNA region |
RHBDD2 | Mature miRNA region |
ERMP1 | Mature miRNA region |
G2E3 | Mature miRNA region |
PHF3 | Mature miRNA region |
C19orf48 | Mature miRNA region |
OMA1 | Mature miRNA region |
MT-CO3 | Mature miRNA region |
VGLL4 | Mature miRNA region |
C17orf80 | Mature miRNA region |
NME4 | Mature miRNA region |
COL4A1 | Mature miRNA region |
HIST1H1C | Mature miRNA region |
RSL1D1 | Mature miRNA region |
LHFPL2 | Mature miRNA region |
PREPL | Mature miRNA region |
DHX57 | Mature miRNA region |
HIST2H2BF | Mature miRNA region |
EIF3C | Mature miRNA region |
PES1 | Mature miRNA region |
POLD1 | Mature miRNA region |
AGO1 | Mature miRNA region |
MAP3K1 | Mature miRNA region |
PGM3 | Mature miRNA region |
ARCN1 | Mature miRNA region |
AMPD2 | Mature miRNA region |
RABL6 | Mature miRNA region |
RAI2 | Mature miRNA region |
FAM8A1 | Mature miRNA region |
PANX1 | Mature miRNA region |
NCBP1 | Mature miRNA region |
EIF3J | Mature miRNA region |
TBC1D31 | Mature miRNA region |
LBX2 | Mature miRNA region |
IRS2 | Mature miRNA region |
ANKRD40 | Mature miRNA region |
ZFP62 | Mature miRNA region |
GNG5 | Mature miRNA region |
MMP11 | Mature miRNA region |
SLCO3A1 | Mature miRNA region |
TBC1D1 | Mature miRNA region |
NDST1 | Mature miRNA region |
POLR3D | Mature miRNA region |
DZIP1 | Mature miRNA region |
ENO2 | Mature miRNA region |
PCDHGB2 | Mature miRNA region |
BRI3 | Mature miRNA region |
RBBP4 | Mature miRNA region |
SPN | Mature miRNA region |
FKBP4 | Mature miRNA region |
AGTRAP | Mature miRNA region |
CHEK1 | Mature miRNA region |
LIN28B | Mature miRNA region |
CBX5 | Mature miRNA region |
PDCL3 | Mature miRNA region |
ZKSCAN7 | Mature miRNA region |
RBM8A | Mature miRNA region |
ZFP3 | Mature miRNA region |
EEF1A1 | Mature miRNA region |
SPAG9 | Mature miRNA region |
RBM14 | Mature miRNA region |
CCNG1 | Mature miRNA region |
PCBP2 | Mature miRNA region |
GLUL | Mature miRNA region |
MT-ND3 | Mature miRNA region |
PPP1R2 | Mature miRNA region |
TRPV1 | Mature miRNA region |
MKI67 | Mature miRNA region |
PPP2R1A | Mature miRNA region |
MT-ND1 | Mature miRNA region |
IRS4 | Mature miRNA region |
SREBF1 | Mature miRNA region |
PDP2 | Mature miRNA region |
ATL2 | Mature miRNA region |
CCDC97 | Mature miRNA region |
TRMT2A | Mature miRNA region |
IGF2BP1 | Mature miRNA region |
RPL12 | Mature miRNA region |
TNPO2 | Mature miRNA region |
ZNF776 | Mature miRNA region |
HNRNPC | Mature miRNA region |
CRK | Mature miRNA region |
ZNF256 | Mature miRNA region |
DCAF6 | Mature miRNA region |
TCEB2 | Mature miRNA region |
APPL1 | Mature miRNA region |
UROC1 | Mature miRNA region |
RPA1 | Mature miRNA region |
MRPS2 | Mature miRNA region |
TMEM127 | Mature miRNA region |
AGO2 | Mature miRNA region |
PACS2 | Mature miRNA region |
SETD1A | Mature miRNA region |
ATXN1 | Mature miRNA region |
CWC15 | Mature miRNA region |
ARID3B | Mature miRNA region |
RAVER2 | Mature miRNA region |
ALG13 | Mature miRNA region |
ZNF451 | Mature miRNA region |
TUBA1B | Mature miRNA region |
LRRC41 | Mature miRNA region |
UHRF1BP1 | Mature miRNA region |
RNF213 | Mature miRNA region |
SRGAP2 | Mature miRNA region |
PA2G4 | Mature miRNA region |
OTUB1 | Mature miRNA region |
ACTG1 | Mature miRNA region |
MTMR14 | Mature miRNA region |
ARHGAP12 | Mature miRNA region |
COX10 | Mature miRNA region |
TNFRSF1A | Mature miRNA region |
IGF1R | Mature miRNA region |
SNX4 | Mature miRNA region |
RPL10 | Mature miRNA region |
NDUFS5 | Mature miRNA region |
TERF1 | Mature miRNA region |
MT-ND4 | Mature miRNA region |
KIAA0100 | Mature miRNA region |
THRAP3 | Mature miRNA region |
DCAF8 | Mature miRNA region |
FAM171A2 | Mature miRNA region |
BAZ1B | Mature miRNA region |
BAHCC1 | Mature miRNA region |
CABLES1 | Mature miRNA region |
CDCA3 | Mature miRNA region |
TMEM101 | Mature miRNA region |
NPM1 | Mature miRNA region |
PSMD2 | Mature miRNA region |
ZZEF1 | Mature miRNA region |
GTF3C1 | Mature miRNA region |
NR1D2 | Mature miRNA region |
NT5DC2 | Mature miRNA region |
PTK2 | Mature miRNA region |
MPL | Mature miRNA region |
AEBP2 | Mature miRNA region |
PSMA6P1 | Mature miRNA region |
HK1 | Mature miRNA region |
TXNRD1 | Mature miRNA region |
NRSN2 | Mature miRNA region |
HLA-C | Mature miRNA region |
WNT1 | Mature miRNA region |
CTC1 | Mature miRNA region |
YIPF4 | Mature miRNA region |
AHSA1 | Mature miRNA region |
FOXD4L6 | Mature miRNA region |
IVD | Mature miRNA region |
OAT | Mature miRNA region |
ARNT2 | Mature miRNA region |
CHD9 | Mature miRNA region |
TIMP3 | Mature miRNA region |
PMPCA | Mature miRNA region |
CLTC | Mature miRNA region |
COL6A1 | Mature miRNA region |
ARFGEF1 | Mature miRNA region |
ATP5J2 | Mature miRNA region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs199792248 | chr19:52147441-52147442 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
2 | rs187760752 | chr19:52147486-52147487 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
3 | rs200517476 | chr19:52147508-52147509 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
4 | rs559896384 | chr19:52147534-52147535 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
5 | rs4802833 | chr19:52147594-52147595 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs10420915 | chr19:52147613-52147614 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs114401941 | chr19:52147632-52147633 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
8 | rs537750812 | chr19:52147640-52147641 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
9 | rs12979621 | chr19:52147706-52147707 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs536242225 | chr19:52147779-52147780 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
11 | rs1868951 | chr19:52147799-52147800 | Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
12 | rs536728648 | chr19:52147841-52147842 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs10426897 | chr19:52147877-52147878 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
14 | rs192644257 | chr19:52147883-52147884 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
15 | rs534363815 | chr19:52147895-52147896 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
16 | rs12972367 | chr19:52147904-52147905 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
17 | rs558888857 | chr19:52147905-52147906 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
18 | rs12985513 | chr19:52147907-52147908 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
19 | rs76025857 | chr19:52147913-52147914 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
20 | rs12972546 | chr19:52147924-52147925 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
21 | rs12972565 | chr19:52147944-52147945 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
22 | rs10426737 | chr19:52147969-52147970 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs36109667 | chr19:52148001-52148002 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | n/a | n/a | Overlapped CNVs | n/a |
24 | rs562131200 | chr19:52148029-52148030 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs12972802 | chr19:52148039-52148040 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs61335671 | chr19:52148084-52148085 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs541523144 | chr19:52148133-52148134 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs78879098 | chr19:52148161-52148162 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs527402177 | chr19:52148182-52148183 | Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs2864906 | chr19:52148241-52148242 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs564145179 | chr19:52148242-52148243 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs148111966 | chr19:52148272-52148273 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs5828488 | chr19:52148293-52148294 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
34 | rs3063335 | chr19:52148294-52148295 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs12971378 | chr19:52148302-52148303 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
36 | rs7245765 | chr19:52148305-52148306 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs7245866 | chr19:52148313-52148314 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs556417616 | chr19:52148329-52148330 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs74361350 | chr19:52148389-52148390 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs533746769 | chr19:52148403-52148404 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs141853835 | chr19:52148427-52148428 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs36016041 | chr19:52148460-52148461 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs548691243 | chr19:52148473-52148474 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs371564944 | chr19:52148507-52148508 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs7507210 | chr19:52148556-52148557 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs552235909 | chr19:52148567-52148568 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs374178644 | chr19:52148574-52148575 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs566910729 | chr19:52148597-52148598 | Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs184038214 | chr19:52148604-52148605 | Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs559073793 | chr19:52148608-52148609 | Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Wilms tumour | 21544195 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18852474 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Cervical cancer | 21062161 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Prostate cancer | 16573809 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Gastric adenocarcinoma | 19115996 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Adrenocortical carcinoma | 18281524 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Lung cancer | 18438408 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Cancer | 20164920 | CNVD |
Melanoma | 17363583 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Ovarian cancer | 22355333 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:52143600-52147800 | Genic enhancers | Primary monocytes fromperipheralblood | blood |
2 | chr19:52143600-52147800 | Genic enhancers | Primary B cells from peripheral blood | blood |
3 | chr19:52145400-52148000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
4 | chr19:52145600-52147800 | Enhancers | Primary B cells from cord blood | blood |
5 | chr19:52145600-52147800 | Transcr. at gene 5' and 3' | Monocytes-CD14+_RO01746 | blood |
6 | chr19:52146400-52147800 | Strong transcription | Primary mononuclear cells fromperipheralblood | Blood |
7 | chr19:52146400-52148400 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
8 | chr19:52146800-52147800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
9 | chr19:52146800-52148000 | Genic enhancers | Spleen | Spleen |
10 | chr19:52146800-52150200 | Active TSS | Primary neutrophils fromperipheralblood | blood |
11 | chr19:52147200-52147400 | Enhancers | Lung | lung |
12 | chr19:52147200-52148200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
13 | chr19:52147200-52153400 | Weak transcription | Right Atrium | heart |
14 | chr19:52147400-52147600 | Bivalent Enhancer | Skeletal Muscle Female | skeletal muscle |
15 | chr19:52147400-52149200 | Enhancers | GM12878-XiMat | blood |
16 | chr19:52147600-52147800 | Bivalent Enhancer | Rectal Mucosa Donor 29 | rectum |
17 | chr19:52147600-52147800 | Enhancers | Rectal Mucosa Donor 31 | rectum |
18 | chr19:52147600-52148000 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
19 | chr19:52147800-52148000 | Genic enhancers | Primary mononuclear cells fromperipheralblood | Blood |
20 | chr19:52147800-52148000 | Flanking Bivalent TSS/Enh | Rectal Mucosa Donor 29 | rectum |
21 | chr19:52147800-52148200 | Transcr. at gene 5' and 3' | Primary monocytes fromperipheralblood | blood |
22 | chr19:52147800-52148200 | Bivalent/Poised TSS | Brain Anterior Caudate | brain |
23 | chr19:52147800-52148400 | Enhancers | H9 Cell Line | embryonic stem cell |
24 | chr19:52147800-52148400 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
25 | chr19:52147800-52148400 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
26 | chr19:52147800-52149000 | Flanking Active TSS | Primary B cells from cord blood | blood |
27 | chr19:52147800-52149000 | Transcr. at gene 5' and 3' | Primary B cells from peripheral blood | blood |
28 | chr19:52147800-52149000 | Enhancers | Primary hematopoietic stem cells | blood |
29 | chr19:52147800-52149200 | Active TSS | Brain Substantia Nigra | brain |
30 | chr19:52147800-52149600 | Active TSS | Thymus | Thymus |
31 | chr19:52148000-52148200 | Bivalent Enhancer | ES-WA7 Cell Line | embryonic stem cell |
32 | chr19:52148000-52148200 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
33 | chr19:52148000-52148200 | Flanking Active TSS | Primary mononuclear cells fromperipheralblood | Blood |
34 | chr19:52148000-52148200 | Flanking Active TSS | Rectal Mucosa Donor 29 | rectum |
35 | chr19:52148000-52148200 | Bivalent Enhancer | HepG2 | liver |
36 | chr19:52148000-52148400 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
37 | chr19:52148000-52148600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
38 | chr19:52148000-52148600 | Weak transcription | Spleen | Spleen |
39 | chr19:52148200-52148400 | Flanking Active TSS | Primary monocytes fromperipheralblood | blood |
40 | chr19:52148200-52148400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
41 | chr19:52148200-52148600 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
42 | chr19:52148200-52148800 | Active TSS | Brain Anterior Caudate | brain |
43 | chr19:52148200-52149000 | Active TSS | Primary mononuclear cells fromperipheralblood | Blood |
44 | chr19:52148200-52149000 | Active TSS | Rectal Mucosa Donor 29 | rectum |
45 | chr19:52148400-52148600 | Active TSS | Primary monocytes fromperipheralblood | blood |
46 | chr19:52148400-52148600 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
47 | chr19:52148400-52148600 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
48 | chr19:52148400-52148600 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
49 | chr19:52148400-52149000 | Bivalent/Poised TSS | Brain Inferior Temporal Lobe | brain |
50 | chr19:52148400-52149200 | Bivalent/Poised TSS | Brain Hippocampus Middle | brain |