Variant report

Variant	nsv544096
Chromosome Location	chr19:56905651-56933455
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:434)
CpG islands
(count:1038)
Chromatin interactive
region (count:23)
LncRNA
region (count:81)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:434 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:56915260-56915738	HepG2	liver:	n/a	n/a
2	ATF3	chr19:56915514-56915819	K562	blood:	n/a	chr19:56915650-56915659
3	ATF3	chr19:56915297-56915505	K562	blood:	n/a	n/a
4	ATF3	chr19:56915310-56915485	GM12878	blood:	n/a	n/a
5	ATF3	chr19:56915162-56915692	A549	lung:	n/a	chr19:56915650-56915659
6	BACH1	chr19:56915357-56915904	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr19:56915472-56915593	K562	blood:	n/a	n/a
8	BATF	chr19:56914712-56915009	GM12878	blood:	n/a	n/a
9	BCL3	chr19:56915688-56916871	GM12878	blood:	n/a	chr19:56915723-56915736 chr19:56915722-56915735
10	BCL3	chr19:56915682-56916866	GM12878	blood:	n/a	chr19:56915723-56915736 chr19:56915722-56915735
11	BCL3	chr19:56915760-56916356	A549	lung:	n/a	n/a
12	BHLHE40	chr19:56915310-56916331	K562	blood:	n/a	chr19:56915676-56915692 chr19:56915606-56915622
13	BRCA1	chr19:56915774-56915919	H1-hESC	embryonic stem cell:	n/a	n/a
14	BRCA1	chr19:56915272-56915548	GM12878	blood:	n/a	n/a
15	CBX3	chr19:56915466-56916519	K562	blood:	n/a	n/a
16	CBX3	chr19:56911845-56912230	K562	blood:	n/a	n/a
17	CBX3	chr19:56911863-56912213	K562	blood:	n/a	n/a
18	CCNT2	chr19:56915246-56915917	K562	blood:	n/a	n/a
19	CCNT2	chr19:56910346-56910482	K562	blood:	n/a	n/a
20	CEBPB	chr19:56915189-56915412	H1-hESC	embryonic stem cell:	n/a	n/a
21	CHD1	chr19:56915539-56915567	GM12878	blood:	n/a	n/a
22	CHD2	chr19:56915389-56915902	H1-hESC	embryonic stem cell:	n/a	chr19:56915710-56915717
23	CHD2	chr19:56915198-56915760	HepG2	liver:	n/a	chr19:56915710-56915717
24	CHD2	chr19:56915107-56916284	GM12878	blood:	n/a	chr19:56915710-56915717
25	CHD2	chr19:56915391-56915727	K562	blood:	n/a	chr19:56915710-56915717
26	CREB1	chr19:56915151-56915970	A549	lung:	n/a	n/a
27	CREB1	chr19:56915162-56915938	K562	blood:	n/a	n/a
28	CREB1	chr19:56915097-56915953	H1-hESC	embryonic stem cell:	n/a	n/a
29	CREB1	chr19:56915206-56915942	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr19:56907618-56907734	Fibrobl	skin:	n/a	n/a
31	CTCF	chr19:56907636-56907703	MCF-7	breast:	n/a	n/a
32	CTCF	chr19:56907500-56907650	GM12869	blood:	n/a	n/a
33	CTCF	chr19:56915640-56915790	WI-38	lung:	n/a	chr19:56915680-56915693
34	CTCF	chr19:56907540-56907690	HRE	kidney:	n/a	n/a
35	CTCF	chr19:56907636-56907700	GM12892	blood:	n/a	n/a
36	CTCF	chr19:56907520-56907670	BJ	skin:	n/a	n/a
37	CTCF	chr19:56907598-56907769	MCF-7	breast:	n/a	n/a
38	CTCF	chr19:56907584-56907730	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr19:56907480-56907630	BE2_C	brain:	n/a	n/a
40	CTCF	chr19:56907500-56907650	GM12868	blood:	n/a	n/a
41	CTCF	chr19:56907520-56907670	NHEK	skin:	n/a	n/a
42	CTCF	chr19:56907627-56907704	HUVEC	blood vessel:	n/a	n/a
43	CTCF	chr19:56907630-56907706	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr19:56907593-56907759	MCF-7	breast:	n/a	n/a
45	CTCF	chr19:56907540-56907690	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chr19:56907500-56907650	MCF-7	breast:	n/a	n/a
47	CTCF	chr19:56907655-56907703	MCF-7	breast:	n/a	n/a
48	CTCF	chr19:56907540-56907690	NHEK	skin:	n/a	n/a
49	CTCF	chr19:56903940-56905833	SK-N-SH	brain:	n/a	chr19:56904906-56904919 chr19:56904904-56904920 chr19:56904905-56904926 chr19:56904903-56904921 chr19:56904846-56904859
50	CTCF	chr19:56907480-56907630	HA-sp	spinal cord:	n/a	n/a

(count:1038 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56915403-56915453	AG09319	gingival:	n/a
2	chr19:56915403-56915453	AG09319	gingival:	n/a
3	chr19:56915184-56915234	NHBE	bronchial:	n/a
4	chr19:56915650-56915700	MCF-7	breast:	n/a
5	chr19:56915079-56915129	ovcar-3	ovarian:	n/a
6	chr19:56915653-56915703	HepG2	liver:	n/a
7	chr19:56915403-56915453	MCF-7	breast:	n/a
8	chr19:56914764-56914814	HL-60	blood:	n/a
9	chr19:56915879-56915929	NHBE	bronchial:	n/a
10	chr19:56919833-56919883	ProgFib	skin:	n/a
11	chr19:56916205-56916255	NH-A	brain:	n/a
12	chr19:56914764-56914814	GM12892	blood:	n/a
13	chr19:56915732-56915782	ProgFib	skin:	n/a
14	chr19:56915148-56915198	BJ	skin:	n/a
15	chr19:56915655-56915705	NH-A	brain:	n/a
16	chr19:56909007-56909057	BJ	skin:	n/a
17	chr19:56915658-56915708	HRCEpiC	kidney:	n/a
18	chr19:56915079-56915129	HIPEpiC	eye:	n/a
19	chr19:56915148-56915198	NHBE	bronchial:	n/a
20	chr19:56915650-56915700	HRE	kidney:	n/a
21	chr19:56915732-56915782	SK-N-SH	brain:	n/a
22	chr19:56909007-56909057	AG09309	skin:	n/a
23	chr19:56914764-56914814	NT2-D1	testis:	n/a
24	chr19:56916205-56916255	SKMC	muscle:	n/a
25	chr19:56915184-56915234	ProgFib	skin:	n/a
26	chr19:56909007-56909057	SK-N-MC	brain:	n/a
27	chr19:56915522-56915572	AG10803	skin:	n/a
28	chr19:56915148-56915198	HRPEpiC	eye:	n/a
29	chr19:56912553-56912603	HMEC	breast:	n/a
30	chr19:56915855-56915905	SK-N-SH	brain:	n/a
31	chr19:56915732-56915782	GM19239	blood:	n/a
32	chr19:56915879-56915929	BE2_C	brain:	n/a
33	chr19:56915653-56915703	ProgFib	skin:	n/a
34	chr19:56915879-56915929	AG04449	skin:	fetal
35	chr19:56915732-56915782	GM12891	blood:	n/a
36	chr19:56919833-56919883	LNCaP	prostate:	n/a
37	chr19:56915653-56915703	AG09309	skin:	n/a
38	chr19:56915148-56915198	GM19239	blood:	n/a
39	chr19:56919833-56919883	HCF	heart:	n/a
40	chr19:56915855-56915905	Hepatocyte	liver:	n/a
41	chr19:56915148-56915198	T-47D	breast:	n/a
42	chr19:56915879-56915929	MCF-7	breast:	n/a
43	chr19:56915079-56915129	AG04450	lung:	fetal
44	chr19:56914764-56914814	HIPEpiC	eye:	n/a
45	chr19:56915148-56915198	PANC-1	pancreas:	n/a
46	chr19:56915522-56915572	HRCEpiC	kidney:	n/a
47	chr19:56909007-56909057	Hepatocyte	liver:	n/a
48	chr19:56915855-56915905	Hela-S3	cervix:	n/a
49	chr19:56915184-56915234	ECC-1	luminal epithelium:	n/a
50	chr19:56915148-56915198	ProgFib	skin:	n/a

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:56878151..56881655-chr19:56903333..56906269,7	K562	blood:
2	chr19:56886550..56889123-chr19:56903257..56905976,3	K562	blood:
3	chr19:56902257..56906485-chr19:56913118..56917978,7	K562	blood:
4	chr19:56824960..56826803-chr19:56913604..56915630,2	K562	blood:
5	chr19:56913953..56915717-chr19:56929673..56932216,2	K562	blood:
6	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
7	chr19:56912448..56916998-chr19:56918724..56922155,5	K562	blood:
8	chr19:56915589..56918201-chr19:56921743..56925459,4	K562	blood:
9	chr19:56896992..56902951-chr19:56903012..56907037,12	K562	blood:
10	chr19:56902257..56906485-chr19:56913118..56917978,7	K562	blood:
11	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
12	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
13	chr19:56914950..56917627-chr19:56917967..56921707,4	K562	blood:
14	chr19:56902006..56908060-chr19:56909612..56917978,15	K562	blood:
15	chr19:56910743..56913203-chr19:56914097..56915659,2	K562	blood:
16	chr19:56902006..56908060-chr19:56909612..56917978,15	K562	blood:
17	chr19:56895475..56897823-chr19:56903707..56905886,2	K562	blood:
18	chr19:56907962..56910475-chr19:56925379..56927319,2	K562	blood:
19	chr19:56825335..56828118-chr19:56903219..56906332,4	K562	blood:
20	chr19:56630391..56632820-chr19:56902199..56906311,3	K562	blood:
21	chr19:56928898..56932035-chr19:56933505..56936936,3	K562	blood:
22	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
23	chr19:56878056..56881655-chr19:56903333..56906269,5	K562	blood:

(count:81 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
2	lnc-ZNF583-1	chr19:56905586-56905810	XLOC_013167
3	lnc-ZNF583-1	chr19:56909335-56909417	NONHSAT068147
4	lnc-ZNF583-1	chr19:56910263-56910717	XLOC_013167
5	lnc-ZNF583-1	chr19:56910263-56910650	XLOC_013167
6	lnc-ZNF583-1	chr19:56910263-56910596	NONHSAT068132
7	lnc-ZNF583-1	chr19:56905586-56905802	ENSG00000267454.1
8	lnc-ZNF583-1	chr19:56905087-56905810	ENSG00000245902
9	lnc-ZNF583-1	chr19:56905586-56905810	XLOC_013167
10	lnc-ZNF583-1	chr19:56909250-56909357	XLOC_013167
11	lnc-ZNF583-1	chr19:56909250-56910544	NONHSAT068134
12	lnc-ZNF583-1	chr19:56910263-56910539	NONHSAT068135
13	lnc-ZNF583-1	chr19:56909646-56910539	XLOC_013167
14	lnc-ZNF583-1	chr19:56909646-56909752	XLOC_013167
15	lnc-ZNF583-1	chr19:56905586-56905810	NONHSAT068131
16	lnc-ZNF583-1	chr19:56905586-56905810	ENSG00000267454.1
17	lnc-ZNF583-1	chr19:56908633-56909752	NONHSAT147062
18	lnc-ZNF583-1	chr19:56909646-56909752	XLOC_013167
19	lnc-ZNF583-1	chr19:56909646-56909752	NONHSAT068132
20	lnc-ZNF583-1	chr19:56910263-56910499	NONHSAT068144
21	lnc-ZNF583-1	chr19:56909207-56909417	NONHSAT068146
22	lnc-ZNF583-1	chr19:56909250-56909417	NONHSAT068139
23	lnc-ZNF583-1	chr19:56909250-56909357	XLOC_013167
24	lnc-ZNF582-1	chr19:56915271-56915351	NONHSAT068148
25	lnc-ZNF583-1	chr19:56909646-56909752	ENSG00000245902
26	lnc-ZNF583-1	chr19:56909250-56909417	ENSG00000245902
27	lnc-ZNF583-1	chr19:56910263-56910481	XLOC_013167
28	lnc-ZNF583-1	chr19:56909250-56909417	ENSG00000245902
29	lnc-ZNF582-1	chr19:56910058-56910601	NONHSAT068148
30	lnc-ZNF583-1	chr19:56909646-56910539	NONHSAT068133
31	lnc-ZNF583-1	chr19:56910263-56910564	XLOC_013167
32	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
33	lnc-ZNF583-1	chr19:56905586-56905810	NONHSAT068139
34	lnc-ZNF583-1	chr19:56909646-56910537	ENSG00000245902
35	lnc-ZNF583-1	chr19:56909646-56909752	XLOC_013167
36	lnc-ZNF582-1	chr19:56915271-56915279	XLOC_013415
37	lnc-ZNF583-1	chr19:56909250-56909417	XLOC_013167
38	lnc-ZNF583-1	chr19:56909646-56909752	XLOC_013167
39	lnc-ZNF583-1	chr19:56905586-56905810	NONHSAT068132
40	lnc-ZNF583-1	chr19:56910263-56910539	XLOC_013167
41	lnc-ZNF583-1	chr19:56905586-56905810	XLOC_013167
42	lnc-ZNF583-1	chr19:56909250-56909417	NONHSAT068132
43	lnc-ZNF583-1	chr19:56910263-56910537	ENSG00000245902
44	lnc-ZNF583-1	chr19:56905586-56905810	NONHSAT068133
45	lnc-ZNF583-1	chr19:56909646-56909752	XLOC_013167
46	lnc-ZNF583-1	chr19:56909646-56909752	NONHSAT068135
47	lnc-ZNF583-1	chr19:56909128-56909417	NONHSAT068144
48	lnc-ZNF583-1	chr19:56909646-56909825	NONHSAT068139
49	lnc-ZNF583-1	chr19:56905586-56906173	XLOC_013167
50	lnc-ZNF583-1	chr19:56910263-56910544	NONHSAT147062

No data

Variant related genes	Relation type
ZNF582	TF binding region
ENSG00000266631	TF binding region
ZNF583	TF binding region
ZNF582	CpG island
ENSG00000266631	CpG island
ZNF583	CpG island
ENSG00000018869	chromatin interactions
ENSG00000267192	chromatin interactions
ENSG00000267606	chromatin interactions
ENSG00000198440	chromatin interactions
ENSG00000200646	chromatin interactions
ENSG00000131848	chromatin interactions
ENSG00000240225	chromatin interactions
ENSG00000142409	chromatin interactions
ENSG00000267781	chromatin interactions
ENSG00000267776	chromatin interactions
ENSG00000267454	chromatin interactions
ENSG00000266631	chromatin interactions
ENSG00000267549	chromatin interactions
G3BP1	miRNA target sites
TNFRSF11B	miRNA target sites
TSPAN6	miRNA target sites
TNFRSF21	miRNA target sites
ZEB2	miRNA target sites
RAD51AP1	miRNA target sites
PPID	miRNA target sites
MLLT3	miRNA target sites
RIOK2	miRNA target sites
TES	miRNA target sites
NUFIP2	miRNA target sites
INPP5D	miRNA target sites
PPIB	miRNA target sites
KIAA1267	miRNA target sites
RNF34	miRNA target sites
CBX1	miRNA target sites
SLC29A1	miRNA target sites
TNFAIP3	miRNA target sites
INPPL1	miRNA target sites
PLDN	miRNA target sites
BCL2	miRNA target sites
INO80D	miRNA target sites
PPCS	miRNA target sites
GALNT3	miRNA target sites

Extended variants
information (count: 995 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:995 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs117120670	chr19:56905685-56905686	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
2	rs572346956	chr19:56905711-56905712	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
3	rs61740431	chr19:56905731-56905732	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs532968888	chr19:56905759-56905760	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
5	rs73621250	chr19:56905760-56905761	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs544754567	chr19:56905883-56905884	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
7	rs118104298	chr19:56905891-56905892	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
8	rs7258010	chr19:56905912-56905913	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs149548076	chr19:56905920-56905921	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
10	rs11669155	chr19:56905938-56905939	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs377564876	chr19:56905967-56905968	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
12	rs185349723	chr19:56906008-56906009	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
13	rs4801316	chr19:56906019-56906020	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs368295513	chr19:56906027-56906028	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
15	rs545718016	chr19:56906065-56906066	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
16	rs34450526	chr19:56906085-56906086	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs373263674	chr19:56906134-56906135	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
18	rs531142630	chr19:56906154-56906155	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
19	rs375973630	chr19:56906176-56906177	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
20	rs189882259	chr19:56906225-56906226	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
21	rs112429684	chr19:56906232-56906233	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
22	rs199956178	chr19:56906236-56906237	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
23	rs141779200	chr19:56906237-56906238	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
24	rs77913772	chr19:56906249-56906250	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
25	rs530033739	chr19:56906273-56906274	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs547019717	chr19:56906354-56906355	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs566755379	chr19:56906385-56906386	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs534880467	chr19:56906387-56906388	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs73054247	chr19:56906405-56906406	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs73937259	chr19:56906431-56906432	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs546803671	chr19:56906433-56906434	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs8111813	chr19:56906465-56906466	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs556620909	chr19:56906500-56906501	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs573719156	chr19:56906513-56906514	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs542251787	chr19:56906548-56906549	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs552883689	chr19:56906551-56906552	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs569306788	chr19:56906552-56906553	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs572759330	chr19:56906606-56906607	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs545682858	chr19:56906625-56906626	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs565597879	chr19:56906637-56906638	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs531103717	chr19:56906750-56906751	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs370037500	chr19:56906759-56906760	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs566423549	chr19:56906883-56906884	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs112031037	chr19:56906928-56906929	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs372997966	chr19:56906953-56906954	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs544860972	chr19:56906983-56906984	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs60471512	chr19:56907065-56907066	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs530161151	chr19:56907066-56907067	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs546788040	chr19:56907072-56907073	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs566826646	chr19:56907078-56907079	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1418 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56900000-56906800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:56903400-56906000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:56903600-56906200	Active TSS	Stomach Smooth Muscle	stomach
4	chr19:56903600-56907000	ZNF genes & repeats	A549	lung
5	chr19:56903800-56906000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:56903800-56906000	Active TSS	Muscle Satellite Cultured Cells	--
7	chr19:56903800-56906000	Active TSS	Rectal Smooth Muscle	rectum
8	chr19:56904000-56905800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:56904000-56905800	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr19:56904000-56905800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:56904000-56906000	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr19:56904200-56905800	Active TSS	H1 Cell Line	embryonic stem cell
13	chr19:56904200-56905800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr19:56904200-56905800	Active TSS	Fetal Muscle Leg	muscle
15	chr19:56904200-56905800	Active TSS	Fetal Stomach	stomach
16	chr19:56904200-56905800	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr19:56904200-56905800	Active TSS	Right Atrium	heart
18	chr19:56904200-56905800	Active TSS	NHDF-Ad	bronchial
19	chr19:56904200-56906000	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr19:56904400-56905800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr19:56904400-56905800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr19:56904400-56905800	Active TSS	Fetal Lung	lung
23	chr19:56904400-56905800	ZNF genes & repeats	Lung	lung
24	chr19:56904400-56905800	ZNF genes & repeats	Thymus	Thymus
25	chr19:56904400-56906000	Active TSS	H9 Cell Line	embryonic stem cell
26	chr19:56904400-56906200	Active TSS	Brain Angular Gyrus	brain
27	chr19:56904600-56905800	Active TSS	Colon Smooth Muscle	Colon
28	chr19:56904600-56905800	ZNF genes & repeats	Pancreas	Pancrea
29	chr19:56904600-56905800	Active TSS	Osteobl	bone
30	chr19:56905000-56905800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr19:56905000-56905800	ZNF genes & repeats	NH-A	brain
32	chr19:56905000-56905800	ZNF genes & repeats	NHEK	skin
33	chr19:56905000-56906000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr19:56905000-56906000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
35	chr19:56905000-56906000	ZNF genes & repeats	K562	blood
36	chr19:56905000-56913600	ZNF genes & repeats	Liver	Liver
37	chr19:56905200-56905800	ZNF genes & repeats	GM12878-XiMat	blood
38	chr19:56905200-56906000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:56905200-56906000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr19:56905200-56906000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr19:56905200-56906200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr19:56905200-56906200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr19:56905200-56907000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr19:56905200-56907000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
45	chr19:56905400-56905800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr19:56905400-56905800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr19:56905400-56905800	Active TSS	Adipose Nuclei	Adipose
48	chr19:56905400-56905800	Active TSS	Fetal Heart	heart
49	chr19:56905400-56905800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
50	chr19:56905400-56906400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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