Variant report
Variant | nsv548297 |
---|---|
Chromosome Location | chr1:179371973-179477921 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:396)
- CpG islands (count:61)
- Chromatin interactive region (count:16)
- LncRNA region (count:12)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr1:179417315-179418149 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr1:179372366-179372548 | K562 | blood: | n/a | n/a |
3 | BACH1 | chr1:179417282-179417546 | K562 | blood: | n/a | n/a |
4 | BHLHE40 | chr1:179416680-179416751 | K562 | blood: | n/a | n/a |
5 | BHLHE40 | chr1:179417644-179417794 | K562 | blood: | n/a | chr1:179417771-179417787 |
6 | CBX3 | chr1:179445580-179446074 | HCT-116 | colon: | n/a | n/a |
7 | CBX3 | chr1:179445633-179446049 | K562 | blood: | n/a | n/a |
8 | CBX3 | chr1:179445638-179446037 | K562 | blood: | n/a | n/a |
9 | CBX3 | chr1:179445664-179446046 | HCT-116 | colon: | n/a | n/a |
10 | CBX3 | chr1:179393797-179394101 | HCT-116 | colon: | n/a | n/a |
11 | CCNT2 | chr1:179417639-179417843 | K562 | blood: | n/a | n/a |
12 | CEBPB | chr1:179471785-179471955 | K562 | blood: | n/a | n/a |
13 | CEBPB | chr1:179468682-179468724 | K562 | blood: | n/a | n/a |
14 | CEBPB | chr1:179471685-179471978 | HepG2 | liver: | n/a | n/a |
15 | CEBPB | chr1:179471780-179471966 | IMR90 | lung: | n/a | n/a |
16 | CEBPB | chr1:179410223-179410324 | HepG2 | liver: | n/a | n/a |
17 | CEBPB | chr1:179471742-179471926 | A549 | lung: | n/a | n/a |
18 | CEBPB | chr1:179417959-179418279 | K562 | blood: | n/a | n/a |
19 | CEBPB | chr1:179403206-179403320 | HepG2 | liver: | n/a | n/a |
20 | CEBPB | chr1:179413229-179413547 | K562 | blood: | n/a | n/a |
21 | CEBPB | chr1:179451118-179451130 | H1-hESC | embryonic stem cell: | n/a | n/a |
22 | CEBPB | chr1:179468606-179468861 | A549 | lung: | n/a | n/a |
23 | CEBPB | chr1:179471773-179471946 | Hela-S3 | cervix: | n/a | n/a |
24 | CEBPB | chr1:179417922-179418292 | K562 | blood: | n/a | n/a |
25 | CHD2 | chr1:179416662-179416860 | H1-hESC | embryonic stem cell: | n/a | n/a |
26 | CTCF | chr1:179416723-179416877 | GM19239 | blood: | n/a | n/a |
27 | CTCF | chr1:179416720-179416870 | HCPEpiC | choroid plexus: | n/a | n/a |
28 | CTCF | chr1:179416720-179416870 | GM12872 | blood: | n/a | n/a |
29 | CTCF | chr1:179475478-179475592 | HepG2 | liver: | n/a | n/a |
30 | CTCF | chr1:179416720-179416870 | NHLF | lung: | n/a | n/a |
31 | CTCF | chr1:179416640-179416790 | HEEpiC | esophagus: | n/a | n/a |
32 | CTCF | chr1:179416600-179416750 | NHEK | skin: | n/a | n/a |
33 | CTCF | chr1:179416640-179416790 | HFF | foreskin: | n/a | n/a |
34 | CTCF | chr1:179416760-179416910 | BJ | skin: | n/a | n/a |
35 | CTCF | chr1:179416720-179416870 | K562 | blood: | n/a | n/a |
36 | CTCF | chr1:179416760-179416910 | GM12869 | blood: | n/a | n/a |
37 | CTCF | chr1:179416680-179416830 | GM12878 | blood: | n/a | n/a |
38 | CTCF | chr1:179416780-179416930 | AoAF | blood vessel: | n/a | n/a |
39 | CTCF | chr1:179410812-179410862 | MCF-7 | breast: | n/a | n/a |
40 | CTCF | chr1:179410788-179410847 | HepG2 | liver: | n/a | n/a |
41 | CTCF | chr1:179461286-179461332 | LNCaP | prostate: | n/a | n/a |
42 | CTCF | chr1:179410700-179410966 | K562 | blood: | n/a | n/a |
43 | CTCF | chr1:179427249-179427289 | GM13976 | blood: | n/a | n/a |
44 | CTCF | chr1:179416720-179416870 | GM12865 | blood: | n/a | n/a |
45 | CTCF | chr1:179416720-179416870 | HRPEpiC | eye: | n/a | n/a |
46 | CTCF | chr1:179416700-179416850 | GM12874 | blood: | n/a | n/a |
47 | CTCF | chr1:179416730-179416873 | GM19240 | blood: | n/a | n/a |
48 | CTCF | chr1:179416760-179416910 | GM12865 | blood: | n/a | n/a |
49 | CTCF | chr1:179416700-179416850 | GM12873 | blood: | n/a | n/a |
50 | CTCF | chr1:179416780-179416930 | AG09319 | gingival: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:179459849-179459899 | K562 | blood: | n/a |
2 | chr1:179459849-179459899 | AG04449 | skin: | fetal |
3 | chr1:179459849-179459899 | NT2-D1 | testis: | n/a |
4 | chr1:179459849-179459899 | HAEpiC | amniotic membrane: | n/a |
5 | chr1:179459849-179459899 | SK-N-SH | brain: | n/a |
6 | chr1:179459849-179459899 | GM12878 | blood: | n/a |
7 | chr1:179459849-179459899 | T-47D | breast: | n/a |
8 | chr1:179459849-179459899 | Jurkat | blood: | n/a |
9 | chr1:179459849-179459899 | SAEC | small airway: | n/a |
10 | chr1:179459849-179459899 | A549 | lung: | n/a |
11 | chr1:179459849-179459899 | SKMC | muscle: | n/a |
12 | chr1:179459849-179459899 | HNPCEpiC | eye: | n/a |
13 | chr1:179459849-179459899 | HCF | heart: | n/a |
14 | chr1:179459849-179459899 | BJ | skin: | n/a |
15 | chr1:179459849-179459899 | H1-hESC | embryonic stem cell: | embryo |
16 | chr1:179459849-179459899 | HCT-116 | colon: | n/a |
17 | chr1:179459849-179459899 | ECC-1 | luminal epithelium: | n/a |
18 | chr1:179459849-179459899 | PANC-1 | pancreas: | n/a |
19 | chr1:179459849-179459899 | ovcar-3 | ovarian: | n/a |
20 | chr1:179459849-179459899 | HRE | kidney: | n/a |
21 | chr1:179459849-179459899 | HUVEC | blood vessel: | n/a |
22 | chr1:179459849-179459899 | BE2_C | brain: | n/a |
23 | chr1:179459849-179459899 | CMK | blood: | n/a |
24 | chr1:179459849-179459899 | U87 | brain: | n/a |
25 | chr1:179459849-179459899 | HCM | heart: | n/a |
26 | chr1:179459849-179459899 | AoSMC | blood vessel: | n/a |
27 | chr1:179459849-179459899 | Caco-2 | colon: | n/a |
28 | chr1:179459849-179459899 | AG09309 | skin: | n/a |
29 | chr1:179459849-179459899 | HRPEpiC | eye: | n/a |
30 | chr1:179459849-179459899 | HCPEpiC | choroid plexus: | n/a |
31 | chr1:179459849-179459899 | HepG2 | liver: | n/a |
32 | chr1:179459849-179459899 | AG04450 | lung: | fetal |
33 | chr1:179459849-179459899 | HRCEpiC | kidney: | n/a |
34 | chr1:179459849-179459899 | GM19239 | blood: | n/a |
35 | chr1:179459849-179459899 | HMEC | breast: | n/a |
36 | chr1:179459849-179459899 | HPAEpiC | pulmonary alveolar: | n/a |
37 | chr1:179459849-179459899 | GM12892 | blood: | n/a |
38 | chr1:179459849-179459899 | MCF10A-Er-Src | breast: | n/a |
39 | chr1:179459849-179459899 | LNCaP | prostate: | n/a |
40 | chr1:179459849-179459899 | GM12891 | blood: | n/a |
41 | chr1:179459849-179459899 | Hepatocyte | liver: | n/a |
42 | chr1:179459849-179459899 | HL-60 | blood: | n/a |
43 | chr1:179459849-179459899 | MCF-7 | breast: | n/a |
44 | chr1:179459849-179459899 | AG10803 | skin: | n/a |
45 | chr1:179459849-179459899 | HIPEpiC | eye: | n/a |
46 | chr1:179459849-179459899 | NB4 | blood: | n/a |
47 | chr1:179459849-179459899 | HEK293 | kidney: | embryo |
48 | chr1:179459849-179459899 | NHBE | bronchial: | n/a |
49 | chr1:179459849-179459899 | NH-A | brain: | n/a |
50 | chr1:179459849-179459899 | RPTEC | kidney: | n/a |
(count:16 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:179465791..179468521-chr1:179470887..179473606,2 | MCF-7 | breast: | |
2 | chr1:179341117..179341930-chr1:179397158..179397756,2 | MCF-7 | breast: | |
3 | chr1:179414237..179416318-chr1:179560640..179562488,2 | MCF-7 | breast: | |
4 | chr1:179450571..179452564-chr1:179459735..179462060,2 | K562 | blood: | |
5 | chr1:179420955..179423707-chr1:179426882..179428656,2 | K562 | blood: | |
6 | chr1:179452715..179454955-chr1:179456900..179459797,2 | MCF-7 | breast: | |
7 | chr1:179477575..179481033-chr1:179483963..179487085,3 | K562 | blood: | |
8 | chr1:179464371..179466688-chr1:179474524..179476785,2 | MCF-7 | breast: | |
9 | chr1:179465791..179468521-chr1:179470887..179473606,2 | MCF-7 | breast: | |
10 | chr1:179408823..179410527-chr1:179414662..179417302,2 | K562 | blood: | |
11 | chr1:179445378..179447823-chr1:179449930..179453030,3 | MCF-7 | breast: | |
12 | chr1:179408823..179410527-chr1:179414662..179417302,2 | K562 | blood: | |
13 | chr1:179445378..179447823-chr1:179449930..179453030,3 | MCF-7 | breast: | |
14 | chr1:179464371..179466688-chr1:179474524..179476785,2 | MCF-7 | breast: | |
15 | chr1:179420955..179423707-chr1:179426882..179428656,2 | K562 | blood: | |
16 | chr1:179366133..179368260-chr1:179371106..179373571,2 | K562 | blood: |
(count:12 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-TDRD5-3 | chr1:179473391-179473496 | NONHSAT007863 |
2 | lnc-TDRD5-3 | chr1:179472147-179472264 | NONHSAT007863 |
3 | lnc-SOAT1-3 | chr1:179411096-179411192 | NONHSAT007860 |
4 | lnc-SOAT1-3 | chr1:179417648-179417967 | NONHSAT007859 |
5 | lnc-SOAT1-3 | chr1:179410243-179410334 | NONHSAT007859 |
6 | lnc-SOAT1-3 | chr1:179417648-179417966 | NONHSAT007860 |
7 | lnc-NPHS2-4 | chr1:179426230-179426567 | NONHSAT007862 |
8 | lnc-NPHS2-5 | chr1:179416713-179417575 | NONHSAT007861 |
9 | lnc-TDRD5-3 | chr1:179474329-179474363 | NONHSAT007863 |
10 | lnc-SOAT1-3 | chr1:179411096-179411225 | NONHSAT007859 |
11 | lnc-SOAT1-3 | chr1:179411469-179411593 | NONHSAT007860 |
12 | lnc-NPHS2-4 | chr1:179426715-179426908 | NONHSAT007862 |
No data |
No data |
Variant related genes | Relation type |
---|---|
HNRNPA1P54 | TF binding region |
MEF2AP1 | TF binding region |
ENSG00000269064 | TF binding region |
AXDND1 | TF binding region |
HNRNPA1P54 | CpG island |
MEF2AP1 | CpG island |
ENSG00000269064 | CpG island |
AXDND1 | CpG island |
ENSG00000162779 | chromatin interactions |
ENSG00000269064 | chromatin interactions |
ENSG00000162782 | chromatin interactions |
SATB2 | miRNA target sites |
PLS3 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs11586744 | chr1:179386253-179386254 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs201985331 | chr1:179386296-179386297 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs147145791 | chr1:179386323-179386324 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs141201555 | chr1:179386326-179386327 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs528341102 | chr1:179386327-179386328 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs548184820 | chr1:179386329-179386330 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs374825528 | chr1:179386337-179386338 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs398103407 | chr1:179386339-179386340 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs574003743 | chr1:179386378-179386379 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs542962249 | chr1:179386399-179386400 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs140261140 | chr1:179386411-179386412 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs144338390 | chr1:179386464-179386465 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs551453779 | chr1:179386525-179386526 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs572133032 | chr1:179386542-179386543 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs540811239 | chr1:179386543-179386544 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs565402838 | chr1:179386556-179386557 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs145829309 | chr1:179386564-179386565 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs547624436 | chr1:179386586-179386587 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs567510855 | chr1:179386619-179386620 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs191663175 | chr1:179386625-179386626 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs550124385 | chr1:179386640-179386641 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs569833694 | chr1:179386647-179386648 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs538641661 | chr1:179386652-179386653 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs558238701 | chr1:179386707-179386708 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs547068763 | chr1:179386864-179386865 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs572109385 | chr1:179386865-179386866 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs534374158 | chr1:179386874-179386875 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs554241210 | chr1:179386889-179386890 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs573924992 | chr1:179386893-179386894 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs539984078 | chr1:179386907-179386908 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs148888569 | chr1:179386932-179386933 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs113262413 | chr1:179386956-179386957 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs576635360 | chr1:179387015-179387016 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs12758415 | chr1:179387050-179387051 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
35 | rs373482518 | chr1:179387084-179387085 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs535992963 | chr1:179387089-179387090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs142610714 | chr1:179387095-179387096 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs12754425 | chr1:179387109-179387110 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs113809356 | chr1:179387140-179387141 | Weak transcription | n/a | n/a | Overlapped CNVs | mRNA abundance |
40 | rs561344100 | chr1:179387167-179387168 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs200204317 | chr1:179387277-179387278 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs549673935 | chr1:179387379-179387380 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs557699891 | chr1:179387405-179387406 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs569954827 | chr1:179387406-179387407 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs532259006 | chr1:179387437-179387438 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs111987712 | chr1:179387545-179387546 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs565579535 | chr1:179387649-179387650 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs377394165 | chr1:179387681-179387682 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs534298369 | chr1:179387698-179387699 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs201354292 | chr1:179387726-179387727 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 17603634 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Schizophrenia | 19415332 | CNVD |
Autism | 22495311 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Liposarcoma | 21253554 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21183584 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Rett syndrome | 21593744 | CNVD |
Cancer | 20164919 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 17133270 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Cervical cancer | 21063398 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 20632083 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Medulloblastoma | 21292688 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 21264507 | CNVD |
Multiple myeloma | 21628407 | CNVD |
Cancer | 16751803 | CNVD |
Prostate cancer | 16705090 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Breast cancer | 17850661 | CNVD |
Breast cancer | 16461572 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Neuroblastoma | 21899760 | CNVD |
Bladder cancer | 19088036 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Breast cancer | 21858162 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Breast cancer | 16608533 | CNVD |
Ewing''s sarcoma | 22429812 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Chordoma | 18071362 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17001317 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Prostate cancer | 18632612 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Trisomy 5 syndrome | 21098271 | CNVD |
Ependymoma | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Acute lymphoblastic leukemia | 19100363 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21509527 | CNVD |
Glioblastoma multiforme | 17369134 | CNVD |
Cancer | 17440070 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 21611746 | CNVD |
Breast cancer | 16397240 | CNVD |
Mental retardation | 17847001 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 23248035 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:179386200-179387000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr1:179387000-179389000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
3 | chr1:179389000-179390400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr1:179391600-179394800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
5 | chr1:179393600-179394600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
6 | chr1:179394600-179394800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
7 | chr1:179396800-179397400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
8 | chr1:179398400-179398800 | Enhancers | Duodenum Mucosa | Duodenum |
9 | chr1:179405200-179413000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
10 | chr1:179405600-179406000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
11 | chr1:179408800-179411400 | Enhancers | Fetal Intestine Small | intestine |
12 | chr1:179409600-179411000 | Enhancers | HepG2 | liver |
13 | chr1:179411800-179412800 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
14 | chr1:179412800-179413600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
15 | chr1:179414000-179414200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
16 | chr1:179416800-179417400 | Enhancers | K562 | blood |
17 | chr1:179417400-179417600 | Flanking Active TSS | K562 | blood |
18 | chr1:179417600-179418000 | Active TSS | K562 | blood |
19 | chr1:179418000-179418600 | Enhancers | K562 | blood |
20 | chr1:179447000-179448000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
21 | chr1:179447000-179448600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
22 | chr1:179448600-179449400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
23 | chr1:179453600-179454000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
24 | chr1:179454000-179454400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
25 | chr1:179476400-179476800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
26 | chr1:179476600-179477800 | Enhancers | Stomach Mucosa | stomach |
27 | chr1:179476800-179478200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |