Variant report

Variant	nsv549790
Chromosome Location	chr10:1369268-1371610
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1369971..1371504-chr10:1375376..1377505,2	MCF-7	breast:

Extended variants
information (count: 191 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:191 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs146505772	chr10:1369272-1369273	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs373025994	chr10:1369283-1369284	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs375305607	chr10:1369287-1369288	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs369321665	chr10:1369290-1369291	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs557820258	chr10:1369313-1369314	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs200602131	chr10:1369316-1369317	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs377680297	chr10:1369345-1369346	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs570136152	chr10:1369346-1369347	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs183758152	chr10:1369363-1369364	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs555852441	chr10:1369364-1369365	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs187574750	chr10:1369365-1369366	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs370967214	chr10:1369367-1369368	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs113187537	chr10:1369368-1369369	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs555614049	chr10:1369371-1369372	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs111670693	chr10:1369372-1369373	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs572220197	chr10:1369378-1369379	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs114270555	chr10:1369383-1369384	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs376252171	chr10:1369400-1369401	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs113232018	chr10:1369424-1369425	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113198095	chr10:1369428-1369429	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546309233	chr10:1369445-1369446	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs563019504	chr10:1369463-1369464	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs111247950	chr10:1369467-1369468	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111505762	chr10:1369484-1369485	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs184279922	chr10:1369500-1369501	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374587671	chr10:1369508-1369509	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs113743141	chr10:1369518-1369519	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113750922	chr10:1369521-1369522	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370259107	chr10:1369553-1369554	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs78696205	chr10:1369554-1369555	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368067632	chr10:1369557-1369558	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs563612500	chr10:1369568-1369569	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs573823647	chr10:1369575-1369576	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370599397	chr10:1369593-1369594	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs527949589	chr10:1369602-1369603	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs112473714	chr10:1369604-1369605	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373944431	chr10:1369626-1369627	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547689830	chr10:1369634-1369635	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368457734	chr10:1369644-1369645	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113849683	chr10:1369647-1369648	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs111857104	chr10:1369658-1369659	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375523754	chr10:1369662-1369663	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs74207595	chr10:1369664-1369665	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113007411	chr10:1369665-1369666	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs138602447	chr10:1369676-1369677	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs111382513	chr10:1369701-1369702	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368973377	chr10:1369715-1369716	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532808235	chr10:1369720-1369721	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549465106	chr10:1369721-1369722	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs373482723	chr10:1369730-1369731	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1354200-1369400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:1355000-1387800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:1358800-1370200	Weak transcription	Fetal Brain Female	brain
4	chr10:1364000-1369800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:1367400-1369600	Weak transcription	Gastric	stomach
6	chr10:1367600-1369400	Weak transcription	Right Atrium	heart
7	chr10:1368600-1369800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:1368600-1370000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:1368600-1370400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:1369200-1370400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:1369200-1370400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:1369200-1370600	Enhancers	Pancreas	Pancrea
13	chr10:1369400-1370200	Strong transcription	Right Atrium	heart
14	chr10:1369400-1370400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
15	chr10:1369600-1370200	ZNF genes & repeats	Gastric	stomach
16	chr10:1369800-1370000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:1369800-1370600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
18	chr10:1369800-1373000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:1370000-1370200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:1370000-1370200	Bivalent Enhancer	Placenta	Placenta
21	chr10:1370000-1370400	Enhancers	Lung	lung
22	chr10:1370000-1372800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:1370200-1371200	Weak transcription	Right Atrium	heart
24	chr10:1370200-1371600	Enhancers	Fetal Brain Female	brain
25	chr10:1370200-1372400	Enhancers	Fetal Brain Male	brain
26	chr10:1370400-1372400	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:1370400-1375400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:1370400-1377400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:1370400-1386400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:1370600-1371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:1370600-1371600	Weak transcription	Pancreas	Pancrea
32	chr10:1371600-1371800	Enhancers	Pancreas	Pancrea
33	chr10:1371600-1377600	Weak transcription	Fetal Brain Female	brain

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