Variant report

Variant	nsv550095
Chromosome Location	chr10:18847555-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 915 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:915 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200402127	chr10:18847564-18847565	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs12569487	chr10:18847584-18847585	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs189297263	chr10:18847590-18847591	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12570792	chr10:18847594-18847595	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs577571795	chr10:18847596-18847597	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs181714316	chr10:18847599-18847600	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184185247	chr10:18847601-18847602	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs556720967	chr10:18847614-18847615	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12570360	chr10:18847625-18847626	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs561154549	chr10:18847626-18847627	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12570793	chr10:18847629-18847630	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs12571081	chr10:18847640-18847641	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
13	rs12570794	chr10:18847643-18847644	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
14	rs533380678	chr10:18847650-18847651	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs76484091	chr10:18847658-18847659	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs563835538	chr10:18847661-18847662	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs530994122	chr10:18847672-18847673	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549206023	chr10:18847692-18847693	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs577361110	chr10:18847714-18847715	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117961481	chr10:18847716-18847717	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12569760	chr10:18847720-18847721	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs547286093	chr10:18847734-18847735	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149704837	chr10:18847737-18847738	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs538655749	chr10:18847741-18847742	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs556765495	chr10:18847742-18847743	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs111208096	chr10:18847753-18847754	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs575448014	chr10:18847755-18847756	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs536445502	chr10:18847757-18847758	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs554755828	chr10:18847800-18847801	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111218169	chr10:18847806-18847807	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs569049881	chr10:18847845-18847846	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs573082419	chr10:18847849-18847850	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs540124660	chr10:18847855-18847856	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12570585	chr10:18847859-18847860	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs577939790	chr10:18847864-18847865	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs115047066	chr10:18847878-18847879	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563620947	chr10:18847893-18847894	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs111208097	chr10:18847906-18847907	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189900824	chr10:18847919-18847920	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372024988	chr10:18847923-18847924	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572760074	chr10:18847935-18847936	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181166929	chr10:18847951-18847952	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549069166	chr10:18847991-18847992	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186418013	chr10:18847995-18847996	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs61723698	chr10:18848024-18848025	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs561106685	chr10:18848042-18848043	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528680807	chr10:18848052-18848053	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556345030	chr10:18848072-18848073	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs190914500	chr10:18848099-18848100	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs148463951	chr10:18848134-18848135	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:238 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:18824200-18850600	Weak transcription	NHLF	lung
3	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
4	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
5	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:18831000-18850200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:18834400-18847800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:18838800-18849800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:18840600-18851200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr10:18840800-18851000	Weak transcription	Psoas Muscle	Psoas
11	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
12	chr10:18841400-18848800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18841600-18849600	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr10:18841600-18849800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr10:18841600-18850000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr10:18841600-18850000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:18841600-18850000	ZNF genes & repeats	Fetal Lung	lung
18	chr10:18841600-18851400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chr10:18841600-18851800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr10:18841800-18849600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr10:18841800-18849800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:18841800-18850000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr10:18841800-18850000	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr10:18841800-18850000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr10:18841800-18853000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:18842000-18847800	Weak transcription	Stomach Mucosa	stomach
30	chr10:18842000-18848600	Weak transcription	Placenta	Placenta
31	chr10:18842000-18849200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:18842000-18849200	ZNF genes & repeats	Fetal Brain Female	brain
33	chr10:18842000-18850000	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:18842000-18851400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:18842000-18853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
37	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:18842600-18849400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:18842600-18849800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr10:18842600-18850000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:18842800-18850000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:18842800-18850000	ZNF genes & repeats	Dnd41	blood
45	chr10:18843000-18849200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:18843000-18850000	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr10:18843200-18847800	ZNF genes & repeats	Fetal Muscle Leg	muscle
48	chr10:18843200-18852600	Strong transcription	Ovary	ovary
49	chr10:18843400-18849000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:18843400-18850000	ZNF genes & repeats	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links