Variant report

Variant	nsv550097
Chromosome Location	chr10:18848747-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 820 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:820 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142301667	chr10:18848767-18848768	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs188244333	chr10:18848794-18848795	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201703674	chr10:18848800-18848801	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs563203431	chr10:18848802-18848803	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145938758	chr10:18848803-18848804	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs114505176	chr10:18848811-18848812	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534401714	chr10:18848823-18848824	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs566572605	chr10:18848833-18848834	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs28970736	chr10:18848840-18848841	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs551997557	chr10:18848841-18848842	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs570593683	chr10:18848863-18848864	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs191510632	chr10:18848874-18848875	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs118160631	chr10:18848890-18848891	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs568052860	chr10:18848913-18848914	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs139833666	chr10:18848922-18848923	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs554496621	chr10:18848927-18848928	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573164383	chr10:18848930-18848931	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs540687050	chr10:18848946-18848947	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200929493	chr10:18848956-18848957	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs183121373	chr10:18848961-18848962	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs202102051	chr10:18848977-18848978	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs62648422	chr10:18848986-18848987	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs577348158	chr10:18848989-18848990	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs62648423	chr10:18848993-18848994	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201604924	chr10:18849040-18849041	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs528828032	chr10:18849064-18849065	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200424473	chr10:18849073-18849074	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376479344	chr10:18849088-18849089	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs139131175	chr10:18849107-18849108	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs374497003	chr10:18849111-18849112	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575258145	chr10:18849114-18849115	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs368768100	chr10:18849115-18849116	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371910898	chr10:18849116-18849117	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376497361	chr10:18849119-18849120	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552595338	chr10:18849124-18849125	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs367938663	chr10:18849138-18849139	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs116720172	chr10:18849148-18849149	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535532099	chr10:18849159-18849160	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560056073	chr10:18849163-18849164	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs28970626	chr10:18849190-18849191	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs552223348	chr10:18849193-18849194	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs28970509	chr10:18849200-18849201	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
43	rs531391720	chr10:18849223-18849224	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549608305	chr10:18849232-18849233	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs567915460	chr10:18849241-18849242	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535324629	chr10:18849244-18849245	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547304871	chr10:18849245-18849246	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs557053565	chr10:18849249-18849250	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs375519337	chr10:18849289-18849290	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566828847	chr10:18849300-18849301	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:207 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18824200-18850600	Weak transcription	NHLF	lung
2	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
3	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
4	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:18831000-18850200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:18838800-18849800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:18840600-18851200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr10:18840800-18851000	Weak transcription	Psoas Muscle	Psoas
9	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
10	chr10:18841400-18848800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18841600-18849600	ZNF genes & repeats	Fetal Intestine Large	intestine
12	chr10:18841600-18849800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:18841600-18850000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr10:18841600-18850000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:18841600-18850000	ZNF genes & repeats	Fetal Lung	lung
16	chr10:18841600-18851400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
17	chr10:18841600-18851800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
18	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr10:18841800-18849600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr10:18841800-18849800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:18841800-18850000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr10:18841800-18850000	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr10:18841800-18850000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr10:18841800-18853000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:18842000-18849200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:18842000-18849200	ZNF genes & repeats	Fetal Brain Female	brain
29	chr10:18842000-18850000	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:18842000-18851400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:18842000-18853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
33	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:18842600-18849400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:18842600-18849800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr10:18842600-18850000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:18842800-18850000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:18842800-18850000	ZNF genes & repeats	Dnd41	blood
41	chr10:18843000-18849200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:18843000-18850000	ZNF genes & repeats	Adipose Nuclei	Adipose
43	chr10:18843200-18852600	Strong transcription	Ovary	ovary
44	chr10:18843400-18849000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:18843400-18850000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr10:18844000-18853400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
48	chr10:18845400-18848800	Strong transcription	K562	blood
49	chr10:18845400-18850000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr10:18845400-18850000	ZNF genes & repeats	Liver	Liver

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