Variant report

Variant	nsv550101
Chromosome Location	chr10:18849963-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 734 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:734 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148938364	chr10:18849966-18849967	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs111208101	chr10:18849996-18849997	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs183617827	chr10:18850008-18850009	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540911172	chr10:18850016-18850017	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs151069225	chr10:18850034-18850035	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563449951	chr10:18850039-18850040	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs533032127	chr10:18850043-18850044	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551665966	chr10:18850048-18850049	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570826932	chr10:18850060-18850061	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12572024	chr10:18850072-18850073	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs77936305	chr10:18850078-18850079	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs537621764	chr10:18850088-18850089	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs545682143	chr10:18850092-18850093	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550277667	chr10:18850094-18850095	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187777213	chr10:18850095-18850096	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536042913	chr10:18850109-18850110	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192352305	chr10:18850120-18850121	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12572034	chr10:18850126-18850127	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
19	rs199837749	chr10:18850162-18850163	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs539710752	chr10:18850214-18850215	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34608972	chr10:18850223-18850224	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs558446468	chr10:18850236-18850237	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370867877	chr10:18850244-18850245	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12763343	chr10:18850253-18850254	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs367854490	chr10:18850255-18850256	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201703743	chr10:18850264-18850265	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564297748	chr10:18850265-18850266	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141025838	chr10:18850284-18850285	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs190088018	chr10:18850285-18850286	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs181758340	chr10:18850292-18850293	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs573449864	chr10:18850295-18850296	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200096409	chr10:18850297-18850298	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541125202	chr10:18850300-18850301	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs559242606	chr10:18850313-18850314	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs533170210	chr10:18850316-18850317	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544950168	chr10:18850317-18850318	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563604063	chr10:18850318-18850319	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531723743	chr10:18850319-18850320	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs550242919	chr10:18850324-18850325	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540561493	chr10:18850358-18850359	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs184934875	chr10:18850370-18850371	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200610098	chr10:18850377-18850378	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529326333	chr10:18850378-18850379	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547882474	chr10:18850384-18850385	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs188663210	chr10:18850388-18850389	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532700695	chr10:18850401-18850402	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540051910	chr10:18850410-18850411	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs111218135	chr10:18850421-18850422	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111218116	chr10:18850422-18850423	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs200413334	chr10:18850434-18850435	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:162 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18824200-18850600	Weak transcription	NHLF	lung
2	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
3	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
4	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:18831000-18850200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:18840600-18851200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr10:18840800-18851000	Weak transcription	Psoas Muscle	Psoas
8	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
9	chr10:18841600-18850000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr10:18841600-18850000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:18841600-18850000	ZNF genes & repeats	Fetal Lung	lung
12	chr10:18841600-18851400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
13	chr10:18841600-18851800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
14	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr10:18841800-18850000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr10:18841800-18850000	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr10:18841800-18850000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr10:18841800-18853000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:18842000-18850000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:18842000-18851400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:18842000-18853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
25	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:18842600-18850000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:18842800-18850000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:18842800-18850000	ZNF genes & repeats	Dnd41	blood
31	chr10:18843000-18850000	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr10:18843200-18852600	Strong transcription	Ovary	ovary
33	chr10:18843400-18850000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr10:18844000-18853400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
36	chr10:18845400-18850000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr10:18845400-18850000	ZNF genes & repeats	Liver	Liver
38	chr10:18845600-18850000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:18846000-18850000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
43	chr10:18847000-18850400	Weak transcription	Lung	lung
44	chr10:18847800-18851600	Strong transcription	Brain Hippocampus Middle	brain
45	chr10:18848000-18851200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:18848400-18850000	ZNF genes & repeats	Fetal Kidney	kidney
47	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:18848800-18850800	Weak transcription	K562	blood
49	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
50	chr10:18849000-18851000	Weak transcription	Placenta	Placenta

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