Variant report

Variant	nsv550105
Chromosome Location	chr10:18851335-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 642 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:642 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567985165	chr10:18851340-18851341	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs528066932	chr10:18851346-18851347	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs546526743	chr10:18851347-18851348	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571162670	chr10:18851353-18851354	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs138516697	chr10:18851381-18851382	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs557112073	chr10:18851391-18851392	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs569051014	chr10:18851394-18851395	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs536484591	chr10:18851397-18851398	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs554557349	chr10:18851408-18851409	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs573137921	chr10:18851419-18851420	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540159831	chr10:18851424-18851425	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs553292432	chr10:18851431-18851432	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs559821478	chr10:18851453-18851454	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs548537170	chr10:18851457-18851458	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs191728413	chr10:18851480-18851481	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs545071112	chr10:18851536-18851537	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs563471683	chr10:18851538-18851539	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183638444	chr10:18851540-18851541	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542856122	chr10:18851560-18851561	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs149250048	chr10:18851655-18851656	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs188174729	chr10:18851696-18851697	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs201464210	chr10:18851708-18851709	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs199958005	chr10:18851709-18851710	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201268049	chr10:18851710-18851711	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs202207569	chr10:18851711-18851712	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200318629	chr10:18851712-18851713	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199583811	chr10:18851716-18851717	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12261349	chr10:18851733-18851734	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs140361550	chr10:18851740-18851741	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138191716	chr10:18851742-18851743	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs62648428	chr10:18851743-18851744	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs149722329	chr10:18851748-18851749	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs528740445	chr10:18851755-18851756	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546992169	chr10:18851831-18851832	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs571191240	chr10:18851833-18851834	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141712613	chr10:18851837-18851838	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs550679275	chr10:18851848-18851849	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs569014174	chr10:18851869-18851870	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536445861	chr10:18851892-18851893	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554701692	chr10:18851899-18851900	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566559719	chr10:18851901-18851902	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs534061009	chr10:18851957-18851958	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529263440	chr10:18851967-18851968	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs558601054	chr10:18852000-18852001	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570259001	chr10:18852015-18852016	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147192379	chr10:18852025-18852026	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201080482	chr10:18852036-18852037	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370899093	chr10:18852045-18852046	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189930064	chr10:18852059-18852060	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575382426	chr10:18852096-18852097	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18851400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
4	chr10:18841600-18851800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
5	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
6	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr10:18841800-18853000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:18842000-18851400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:18842000-18853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
12	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:18843200-18852600	Strong transcription	Ovary	ovary
16	chr10:18844000-18853400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
18	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
21	chr10:18847800-18851600	Strong transcription	Brain Hippocampus Middle	brain
22	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
24	chr10:18849000-18854000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:18849000-18868600	Weak transcription	Gastric	stomach
26	chr10:18849400-18851600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:18849400-18852400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:18849800-18853000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:18849800-18853000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:18849800-18854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:18850000-18851400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr10:18850000-18852000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:18850000-18853200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:18850600-18851400	ZNF genes & repeats	Fetal Brain Female	brain
38	chr10:18850800-18851400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:18850800-18851400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
40	chr10:18850800-18851400	ZNF genes & repeats	Fetal Lung	lung
41	chr10:18850800-18851400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr10:18850800-18851400	Strong transcription	K562	blood
43	chr10:18850800-18851600	ZNF genes & repeats	Fetal Kidney	kidney
44	chr10:18850800-18852000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:18850800-18852400	ZNF genes & repeats	Primary B cells from cord blood	blood
46	chr10:18850800-18852400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr10:18850800-18853600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr10:18850800-18854400	ZNF genes & repeats	Adipose Nuclei	Adipose
49	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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