Variant report

Variant	nsv550112
Chromosome Location	chr10:18853581-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 499 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:499 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191665739	chr10:18853595-18853596	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs527715199	chr10:18853599-18853600	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs114317492	chr10:18853629-18853630	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs570999857	chr10:18853673-18853674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs138890097	chr10:18853686-18853687	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs146562610	chr10:18853703-18853704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs143851920	chr10:18853711-18853712	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs538440546	chr10:18853717-18853718	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556749016	chr10:18853728-18853729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs568651360	chr10:18853746-18853747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535742215	chr10:18853759-18853760	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs150156557	chr10:18853763-18853764	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554474634	chr10:18853767-18853768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200132972	chr10:18853768-18853769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs202073373	chr10:18853772-18853773	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200876423	chr10:18853802-18853803	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188395127	chr10:18853808-18853809	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs545432607	chr10:18853838-18853839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs557426709	chr10:18853851-18853852	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs575683606	chr10:18853867-18853868	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs543121986	chr10:18853880-18853881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561698598	chr10:18853910-18853911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs116401820	chr10:18853922-18853923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs180832279	chr10:18853946-18853947	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539369290	chr10:18853978-18853979	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs137956556	chr10:18853986-18853987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs143517356	chr10:18853994-18853995	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559634725	chr10:18853999-18854000	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs527678515	chr10:18854009-18854010	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552652001	chr10:18854057-18854058	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs564478411	chr10:18854063-18854064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147176002	chr10:18854075-18854076	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs117508183	chr10:18854084-18854085	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138806725	chr10:18854090-18854091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs142817287	chr10:18854092-18854093	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs547761783	chr10:18854134-18854135	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs147422176	chr10:18854147-18854148	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs539746628	chr10:18854161-18854162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs187391188	chr10:18854164-18854165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111068279	chr10:18854167-18854168	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575647940	chr10:18854179-18854180	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536720921	chr10:18854184-18854185	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs117474518	chr10:18854191-18854192	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149177246	chr10:18854199-18854200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs138480623	chr10:18854200-18854201	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs559385984	chr10:18854203-18854204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs148484428	chr10:18854260-18854261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs550561079	chr10:18854268-18854269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs186594320	chr10:18854302-18854303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs190636631	chr10:18854399-18854400	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
7	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
11	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
14	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
16	chr10:18849000-18854000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:18849000-18868600	Weak transcription	Gastric	stomach
18	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:18849800-18854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:18850800-18853600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
23	chr10:18850800-18854400	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
27	chr10:18851400-18855200	Weak transcription	K562	blood
28	chr10:18852600-18864800	Weak transcription	Ovary	ovary
29	chr10:18853200-18853600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr10:18854200-18854400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
32	chr10:18855000-18862200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr10:18855400-18855800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
34	chr10:18857600-18858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:18857800-18858800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:18858000-18859200	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr10:18858000-18863200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr10:18858200-18861200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:18858400-18858600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:18858400-18861200	ZNF genes & repeats	Fetal Lung	lung
41	chr10:18858600-18858800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:18859600-18868600	Weak transcription	K562	blood
43	chr10:18860000-18863200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
44	chr10:18860400-18863200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:18861000-18862400	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr10:18861000-18862400	ZNF genes & repeats	Liver	Liver
47	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:18861200-18862400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr10:18861400-18861600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:18861400-18864000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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