Variant report

Variant	nsv550114
Chromosome Location	chr10:18854168-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 459 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:459 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575647940	chr10:18854179-18854180	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs536720921	chr10:18854184-18854185	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs117474518	chr10:18854191-18854192	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149177246	chr10:18854199-18854200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs138480623	chr10:18854200-18854201	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs559385984	chr10:18854203-18854204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs148484428	chr10:18854260-18854261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550561079	chr10:18854268-18854269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs186594320	chr10:18854302-18854303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190636631	chr10:18854399-18854400	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201983864	chr10:18854408-18854409	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs200065926	chr10:18854417-18854418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200427937	chr10:18854420-18854421	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533237242	chr10:18854429-18854430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs531763947	chr10:18854499-18854500	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62648430	chr10:18854517-18854518	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532572412	chr10:18854531-18854532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs28971206	chr10:18854548-18854549	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs529459026	chr10:18854558-18854559	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs566522474	chr10:18854566-18854567	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs11014921	chr10:18854571-18854572	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs11014922	chr10:18854580-18854581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs117347740	chr10:18854589-18854590	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371726931	chr10:18854595-18854596	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs565940747	chr10:18854601-18854602	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs62648431	chr10:18854612-18854613	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs369913936	chr10:18854630-18854631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62648432	chr10:18854634-18854635	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs111208106	chr10:18854676-18854677	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs181739160	chr10:18854677-18854678	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs62648433	chr10:18854695-18854696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569287411	chr10:18854723-18854724	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554278081	chr10:18854740-18854741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111208107	chr10:18854745-18854746	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537084411	chr10:18854748-18854749	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs555161866	chr10:18854756-18854757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs567561679	chr10:18854758-18854759	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs377225916	chr10:18854760-18854761	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200675088	chr10:18854768-18854769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs534424149	chr10:18854777-18854778	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369922780	chr10:18854781-18854782	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs373873543	chr10:18854785-18854786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373028554	chr10:18854793-18854794	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs377361290	chr10:18854798-18854799	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553093948	chr10:18854800-18854801	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs577929440	chr10:18854806-18854807	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs62648434	chr10:18854833-18854834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185714799	chr10:18854864-18854865	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs62634837	chr10:18854881-18854882	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs62634838	chr10:18854884-18854885	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18854600	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
7	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
11	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
14	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
16	chr10:18849000-18868600	Weak transcription	Gastric	stomach
17	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:18850800-18854400	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
24	chr10:18851400-18855200	Weak transcription	K562	blood
25	chr10:18852600-18864800	Weak transcription	Ovary	ovary
26	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:18854200-18854400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
28	chr10:18855000-18862200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr10:18855400-18855800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
30	chr10:18857600-18858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:18857800-18858800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:18858000-18859200	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr10:18858000-18863200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr10:18858200-18861200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:18858400-18858600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:18858400-18861200	ZNF genes & repeats	Fetal Lung	lung
37	chr10:18858600-18858800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:18859600-18868600	Weak transcription	K562	blood
39	chr10:18860000-18863200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
40	chr10:18860400-18863200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:18861000-18862400	ZNF genes & repeats	Primary T cells from cord blood	blood
42	chr10:18861000-18862400	ZNF genes & repeats	Liver	Liver
43	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:18861200-18862400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr10:18861400-18861600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:18861400-18864000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr10:18861600-18862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:18861600-18862400	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr10:18861600-18866200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:18861600-18867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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