Variant report

Variant	nsv550116
Chromosome Location	chr10:18855161-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 398 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:398 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566252618	chr10:18855164-18855165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139658898	chr10:18855176-18855177	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs189865688	chr10:18855177-18855178	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567162268	chr10:18855184-18855185	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111068281	chr10:18855189-18855190	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs62648436	chr10:18855216-18855217	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs146047691	chr10:18855223-18855224	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs538873988	chr10:18855228-18855229	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557287739	chr10:18855229-18855230	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs573987538	chr10:18855235-18855236	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62648437	chr10:18855247-18855248	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542565091	chr10:18855269-18855270	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562522057	chr10:18855277-18855278	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573972438	chr10:18855278-18855279	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541492882	chr10:18855288-18855289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs150927871	chr10:18855311-18855312	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182837968	chr10:18855315-18855316	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs545244559	chr10:18855325-18855326	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62648438	chr10:18855334-18855335	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs545139293	chr10:18855362-18855363	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376701228	chr10:18855401-18855402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs531196277	chr10:18855402-18855403	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs377702296	chr10:18855416-18855417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs536941682	chr10:18855418-18855419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs62648439	chr10:18855442-18855443	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370420050	chr10:18855449-18855450	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs373282676	chr10:18855465-18855466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376061732	chr10:18855466-18855467	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370110451	chr10:18855471-18855472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs548543879	chr10:18855472-18855473	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs141415312	chr10:18855491-18855492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs567227499	chr10:18855503-18855504	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs188787899	chr10:18855513-18855514	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145843665	chr10:18855537-18855538	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs546705620	chr10:18855541-18855542	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs193212235	chr10:18855567-18855568	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538738079	chr10:18855576-18855577	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs138739427	chr10:18855585-18855586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568971032	chr10:18855622-18855623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536518193	chr10:18855647-18855648	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150349040	chr10:18855680-18855681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs573961964	chr10:18855681-18855682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs534737336	chr10:18855701-18855702	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553047574	chr10:18855728-18855729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577669570	chr10:18855786-18855787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs545109604	chr10:18855821-18855822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567502915	chr10:18855886-18855887	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs575772467	chr10:18855894-18855895	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149532111	chr10:18855904-18855905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144171366	chr10:18855908-18855909	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr10:18841800-18855400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
6	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
10	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
13	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
15	chr10:18849000-18868600	Weak transcription	Gastric	stomach
16	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
22	chr10:18851400-18855200	Weak transcription	K562	blood
23	chr10:18852600-18864800	Weak transcription	Ovary	ovary
24	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:18855000-18862200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
26	chr10:18855400-18855800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
27	chr10:18857600-18858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:18857800-18858800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:18858000-18859200	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr10:18858000-18863200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr10:18858200-18861200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:18858400-18858600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:18858400-18861200	ZNF genes & repeats	Fetal Lung	lung
34	chr10:18858600-18858800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:18859600-18868600	Weak transcription	K562	blood
36	chr10:18860000-18863200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr10:18860400-18863200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:18861000-18862400	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr10:18861000-18862400	ZNF genes & repeats	Liver	Liver
40	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:18861200-18862400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr10:18861400-18861600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:18861400-18864000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr10:18861600-18862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:18861600-18862400	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr10:18861600-18866200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:18861600-18867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:18861800-18862200	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr10:18861800-18862200	ZNF genes & repeats	Adipose Nuclei	Adipose
50	chr10:18861800-18863400	ZNF genes & repeats	Brain Germinal Matrix	brain

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