Variant report

Variant	nsv550118
Chromosome Location	chr10:18855663-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 358 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:358 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs150349040	chr10:18855680-18855681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573961964	chr10:18855681-18855682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534737336	chr10:18855701-18855702	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553047574	chr10:18855728-18855729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577669570	chr10:18855786-18855787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545109604	chr10:18855821-18855822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs567502915	chr10:18855886-18855887	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575772467	chr10:18855894-18855895	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs149532111	chr10:18855904-18855905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144171366	chr10:18855908-18855909	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528084041	chr10:18855913-18855914	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs183494412	chr10:18855971-18855972	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs564881265	chr10:18855984-18855985	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138854744	chr10:18855992-18855993	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs114934428	chr10:18856060-18856061	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs531613732	chr10:18856087-18856088	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs569011175	chr10:18856090-18856091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs117956847	chr10:18856135-18856136	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs368833911	chr10:18856157-18856158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187425560	chr10:18856171-18856172	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566700134	chr10:18856195-18856196	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs571225482	chr10:18856213-18856214	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192077721	chr10:18856215-18856216	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs62648440	chr10:18856220-18856221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs538635421	chr10:18856225-18856226	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368059591	chr10:18856254-18856255	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574685819	chr10:18856256-18856257	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs538721139	chr10:18856265-18856266	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs367846605	chr10:18856296-18856297	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs575781417	chr10:18856300-18856301	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs542810267	chr10:18856304-18856305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs146319391	chr10:18856334-18856335	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs573623304	chr10:18856353-18856354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565765923	chr10:18856373-18856374	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368282334	chr10:18856384-18856385	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs555527196	chr10:18856385-18856386	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564903772	chr10:18856396-18856397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs139621382	chr10:18856417-18856418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs550711376	chr10:18856421-18856422	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562404450	chr10:18856429-18856430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs144347480	chr10:18856481-18856482	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548130916	chr10:18856529-18856530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs151088161	chr10:18856541-18856542	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139920027	chr10:18856543-18856544	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552029320	chr10:18856544-18856545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs571327103	chr10:18856545-18856546	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538611729	chr10:18856591-18856592	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs557434111	chr10:18856603-18856604	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149092178	chr10:18856654-18856655	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569302109	chr10:18856655-18856656	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
3	chr10:18841600-18856200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
5	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
9	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
12	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
14	chr10:18849000-18868600	Weak transcription	Gastric	stomach
15	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:18850800-18856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:18850800-18856600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
21	chr10:18852600-18864800	Weak transcription	Ovary	ovary
22	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:18855000-18862200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr10:18855400-18855800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
25	chr10:18857600-18858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:18857800-18858800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:18858000-18859200	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr10:18858000-18863200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr10:18858200-18861200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:18858400-18858600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:18858400-18861200	ZNF genes & repeats	Fetal Lung	lung
32	chr10:18858600-18858800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:18859600-18868600	Weak transcription	K562	blood
34	chr10:18860000-18863200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr10:18860400-18863200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:18861000-18862400	ZNF genes & repeats	Primary T cells from cord blood	blood
37	chr10:18861000-18862400	ZNF genes & repeats	Liver	Liver
38	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:18861200-18862400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr10:18861400-18861600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:18861400-18864000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr10:18861600-18862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:18861600-18862400	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr10:18861600-18866200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:18861600-18867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:18861800-18862200	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr10:18861800-18862200	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr10:18861800-18863400	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr10:18861800-18869000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:18862000-18862200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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