Variant report

Variant	nsv550119
Chromosome Location	chr10:18856656-18862211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 308 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:308 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201612695	chr10:18856671-18856672	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs536743667	chr10:18856692-18856693	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554901176	chr10:18856699-18856700	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs573454556	chr10:18856705-18856706	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs149846471	chr10:18856711-18856712	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs114825572	chr10:18856712-18856713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145877824	chr10:18856717-18856718	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544475507	chr10:18856733-18856734	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543814395	chr10:18856734-18856735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562501472	chr10:18856821-18856822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62648441	chr10:18856823-18856824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs556906566	chr10:18856838-18856839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs541892421	chr10:18856841-18856842	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111208114	chr10:18856866-18856867	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527453684	chr10:18856869-18856870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577919442	chr10:18856887-18856888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574481444	chr10:18856904-18856905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184295347	chr10:18856912-18856913	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs111208115	chr10:18856924-18856925	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111154352	chr10:18856930-18856931	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143516060	chr10:18856991-18856992	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111217327	chr10:18856993-18856994	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs148028025	chr10:18856994-18856995	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111217461	chr10:18857003-18857004	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs575381268	chr10:18857054-18857055	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567086786	chr10:18857055-18857056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574185263	chr10:18857086-18857087	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534349697	chr10:18857097-18857098	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141745157	chr10:18857116-18857117	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577658410	chr10:18857134-18857135	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs188642649	chr10:18857160-18857161	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11816948	chr10:18857169-18857170	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs574351259	chr10:18857195-18857196	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs541581081	chr10:18857224-18857225	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114626359	chr10:18857244-18857245	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531549072	chr10:18857245-18857246	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs545987042	chr10:18857258-18857259	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs550057385	chr10:18857270-18857271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545543665	chr10:18857303-18857304	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147853409	chr10:18857328-18857329	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532610264	chr10:18857329-18857330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs541477482	chr10:18857333-18857334	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200100892	chr10:18857345-18857346	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs117505500	chr10:18857401-18857402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs531544330	chr10:18857542-18857543	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs559693893	chr10:18857551-18857552	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs61724306	chr10:18857553-18857554	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs530352753	chr10:18857556-18857557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs569181482	chr10:18857558-18857559	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530072020	chr10:18857570-18857571	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
2	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
3	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
7	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
10	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
12	chr10:18849000-18868600	Weak transcription	Gastric	stomach
13	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:18851200-18860200	ZNF genes & repeats	Liver	Liver
17	chr10:18852600-18864800	Weak transcription	Ovary	ovary
18	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:18855000-18862200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr10:18857600-18858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:18857800-18858800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:18858000-18859200	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr10:18858000-18863200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr10:18858200-18861200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:18858400-18858600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:18858400-18861200	ZNF genes & repeats	Fetal Lung	lung
27	chr10:18858600-18858800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:18859600-18868600	Weak transcription	K562	blood
29	chr10:18860000-18863200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
30	chr10:18860400-18863200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:18861000-18862400	ZNF genes & repeats	Primary T cells from cord blood	blood
32	chr10:18861000-18862400	ZNF genes & repeats	Liver	Liver
33	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:18861200-18862400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr10:18861400-18861600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:18861400-18864000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr10:18861600-18862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:18861600-18862400	ZNF genes & repeats	Fetal Intestine Large	intestine
39	chr10:18861600-18866200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:18861600-18867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:18861800-18862200	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr10:18861800-18862200	ZNF genes & repeats	Adipose Nuclei	Adipose
43	chr10:18861800-18863400	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr10:18861800-18869000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:18862000-18862200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:18862000-18862200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:18862000-18862400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:18862000-18866200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:18862200-18862400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr10:18862200-18862400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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